Prupe.2G245400_v2.0.a1
ERF Family

HAD superfamily, subfamily IIIB (Acid phosphatase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0005130
Physical Location & Seq
Reverse (-)
26268870 .. 26271845
2976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G245400.8

Sequence Viewer

Length: 891 bp
ATGTCTGCTTATGGCCATCAAATGGAGCAGCAATACTCTGCTCACAGTCTTTCAAGTAGAGGTTCTGGGAGGAGGCAAAGCAGTTATGTAATGGACTCAGGGTTCTACATGTCGTCTTTTGCTTCCACAATCTTCATTGGTGCACTTGTAACTGTTGGGGTAATATTAATCACATTGCTGATTGCGTTGACCGTAATGCTGCAGTCTTGCCAAAGTAGGAGCCATGGAGTCATTGAGATTGAAAAACCAAGTTATGATTACAATTACTGCCAGATCATCTCTCTGCATGTGGAACTCAACAAAGTTGAAGCAGACCACTTCCCTTCAATTTGCAGGGTTGTTGCCCTTCAATACATCAAAGAAGGCCAATATGCAAGAGATTTAAATTCTACCGTGTGGATGATTCAGAATTATTTCAGTACCCTAAAACGTGACGGTGTGGATGTGGTCTTGATGGACATAGATGACGTTCTTTCTTCAAGTCCCCAGTACATTAAATTGTTAGTGGACCGAGATGATCAATATGGTTCTAGTGATTGTGTGGAAGAGGCAAAGCAGCTGAAGCACGTATATATTTTGAGACTGTACATGAAACTTCATGCTAGTGGGTGGCCTTTGATTTTGCTATCAAGAAAGCCAGAGACGCAACTGAATTCCTCCATAGAGTATCTTATATCTGCAGGATTTAGAGCTTGGTCTTCATTGATTATGAGATCAGAAGATGATTTGCAAATGGATAGTTGTGACTACTTCTCTAAACAAAGGGCTGCAATGCAGAGAAAAGGCTTGCGCATAATAGGCACTATAAGCAGTCACATGGATGCTCTAACAGGCACATCTTTAGGAGAGCGTATTTTTAAGCTTCCAAACCCAGTTTATTACAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_phosphat_B

Protein Analysis

297

Amino Acids

33.61

Weight (kDa)

6.44

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 791
AccB7I CCANNNNNTGG 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 13
AcsI RAATTY 2 cut(s) 385, 652
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 3 cut(s) 421, 491, 587
AfiI CCNNNNNNNGG 1 cut(s) 22
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 6 cut(s) 54, 242, 308, 327, 350, 480
AloI GAACNNNNNNTCC 2 cut(s) 86, 118
AluBI AGCT 3 cut(s) 559, 692, 862
AluI AGCT 3 cut(s) 559, 692, 862
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 574, 635
Alw44I GTGCAC 1 cut(s) 141
AoxI GGCC 3 cut(s) 13, 364, 611
ApaLI GTGCAC 1 cut(s) 141
ApeKI GCWGC 4 cut(s) 28, 199, 556, 767
ApoI RAATTY 2 cut(s) 385, 652
AseI ATTAAT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 413
AspLEI GCGC 1 cut(s) 792
AspS9I GGNCC 1 cut(s) 508
AvaII GGWCC 1 cut(s) 508
BaeGI GKGCMC 1 cut(s) 145
BalI TGGCCA 1 cut(s) 15
BbsI GAAGAC 1 cut(s) 690
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 4 cut(s) 40, 186, 568, 754
BccI CCATC 2 cut(s) 24, 448
BclI TGATCA 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 574, 635
BfaI CTAG 2 cut(s) 531, 603
BfmI CTRYAG 2 cut(s) 200, 678
BisI GCNGC 4 cut(s) 29, 200, 557, 768
BlsI GCNGC 4 cut(s) 30, 201, 558, 769
Bme18I GGWCC 1 cut(s) 508
BmgT120I GGNCC 1 cut(s) 508
BmiI GGNNCC 1 cut(s) 221
BmrI ACTGGG 2 cut(s) 481, 866
BmsI GCATC 1 cut(s) 811
BmuI ACTGGG 2 cut(s) 481, 866
BpiI GAAGAC 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 223
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 487, 872
Bse3DI GCAATG 2 cut(s) 173, 777
BseDI CCNNGG 1 cut(s) 223
BseGI GGATG 3 cut(s) 405, 448, 826
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMI GCAATG 2 cut(s) 173, 777
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 487, 872
BseRI GAGGAG 1 cut(s) 85
BseSI GKGCMC 1 cut(s) 145
BseXI GCAGC 4 cut(s) 40, 186, 568, 754
BshFI GGCC 3 cut(s) 15, 366, 613
BsiHKAI GWGCWC 1 cut(s) 145
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 2 cut(s) 574, 635
BsmBI CGTCTC 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 468
BsnI GGCC 3 cut(s) 15, 366, 613
Bsp1286I GDGCHC 1 cut(s) 145
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 3 cut(s) 273, 517, 713
Bsp19I CCATGG 1 cut(s) 223
BspANI GGCC 3 cut(s) 15, 366, 613
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 221
BspMAI CTGCAG 2 cut(s) 204, 682
BsrDI GCAATG 2 cut(s) 173, 777
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 2 cut(s) 487, 872
BssECI CCNNGG 1 cut(s) 223
BssMI GATC 3 cut(s) 273, 517, 713
BssT1I CCWWGG 1 cut(s) 223
Bst4CI ACNGT 7 cut(s) 47, 154, 193, 394, 437, 585, 884
Bst6I CTCTTC 1 cut(s) 540
BstAUI TGTACA 1 cut(s) 585
BstBAI YACGTR 1 cut(s) 568
BstC8I GCNNGC 1 cut(s) 788
BstDEI CTNAG 1 cut(s) 97
BstDSI CCRYGG 1 cut(s) 223
BstF5I GGATG 3 cut(s) 405, 448, 826
BstHHI GCGC 1 cut(s) 792
BstKTI GATC 3 cut(s) 276, 520, 716
BstMAI GTCTC 2 cut(s) 574, 635
BstMBI GATC 3 cut(s) 273, 517, 713
BstMWI GCNNNNNNNGC 4 cut(s) 562, 643, 798, 807
BstNSI RCATGY 2 cut(s) 112, 290
BstSFI CTRYAG 2 cut(s) 200, 678
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 4 cut(s) 40, 186, 568, 754
BstV2I GAAGAC 1 cut(s) 690
BsuRI GGCC 3 cut(s) 15, 366, 613
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 405, 448, 826
Cac8I GCNNGC 1 cut(s) 788
CfoI GCGC 1 cut(s) 792
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 1 cut(s) 652
Csp6I GTAC 3 cut(s) 420, 490, 586
CviAII CATG 6 cut(s) 109, 224, 287, 589, 599, 817
CviQI GTAC 3 cut(s) 420, 490, 586
DdeI CTNAG 1 cut(s) 97
DpnI GATC 3 cut(s) 275, 519, 715
DpnII GATC 3 cut(s) 273, 517, 713
DraI TTTAAA 1 cut(s) 384
EaeI YGGCCR 1 cut(s) 13
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Eco130I CCWWGG 1 cut(s) 223
Eco47I GGWCC 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 652
EcoT14I CCWWGG 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 223
Esp3I CGTCTC 1 cut(s) 635
FaeI CATG 6 cut(s) 112, 227, 290, 592, 602, 820
FaqI GGGAC 1 cut(s) 468
FatI CATG 6 cut(s) 108, 223, 286, 588, 598, 816
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 4 cut(s) 29, 200, 557, 768
FokI GGATG 3 cut(s) 412, 455, 833
Fsp4HI GCNGC 4 cut(s) 29, 200, 557, 768
FspBI CTAG 2 cut(s) 531, 603
FspI TGCGCA 1 cut(s) 791
GlaI GCGC 1 cut(s) 791
GluI GCNGC 4 cut(s) 29, 200, 557, 768
HaeIII GGCC 3 cut(s) 15, 366, 613
HgaI GACGC 1 cut(s) 652
HhaI GCGC 1 cut(s) 792
Hin1II CATG 6 cut(s) 112, 227, 290, 592, 602, 820
Hin6I GCGC 1 cut(s) 790
HinP1I GCGC 1 cut(s) 790
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 3 cut(s) 95, 228, 403
Hpy166II GTNNAC 3 cut(s) 143, 189, 508
Hpy188I TCNGA 2 cut(s) 408, 718
Hpy188III TCNNGA 2 cut(s) 451, 630
Hpy8I GTNNAC 3 cut(s) 143, 189, 508
HpyAV CCTTC 3 cut(s) 333, 356, 356
HpyCH4III ACNGT 7 cut(s) 47, 154, 193, 394, 437, 585, 884
HpyCH4IV ACGT 3 cut(s) 430, 468, 567
HpyCH4V TGCA 9 cut(s) 143, 202, 286, 333, 374, 680, 730, 770, 775
HpyF10VI GCNNNNNNNGC 4 cut(s) 562, 643, 798, 807
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 3 cut(s) 430, 468, 567
Hsp92II CATG 6 cut(s) 112, 227, 290, 592, 602, 820
HspAI GCGC 1 cut(s) 790
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 273, 517, 713
LmnI GCTCC 2 cut(s) 25, 219
LpnPI CCDG 9 cut(s) 51, 84, 284, 319, 500, 651, 666, 816, 885
Lsp1109I GCAGC 4 cut(s) 40, 186, 568, 754
LweI GCATC 1 cut(s) 811
MaeI CTAG 2 cut(s) 531, 603
MaeII ACGT 3 cut(s) 430, 468, 567
MaeIII GTNAC 4 cut(s) 148, 431, 743, 812
MalI GATC 3 cut(s) 275, 519, 715
MboI GATC 3 cut(s) 273, 517, 713
MboII GAAGA 5 cut(s) 124, 468, 557, 690, 731
MhlI GDGCHC 1 cut(s) 145
MlsI TGGCCA 1 cut(s) 15
MluCI AATT 6 cut(s) 262, 327, 385, 409, 497, 652
MluNI TGGCCA 1 cut(s) 15
MlyI GAGTC 2 cut(s) 89, 237
MnlI CCTC 5 cut(s) 53, 63, 66, 541, 667
Mox20I TGGCCA 1 cut(s) 15
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 1 cut(s) 15
MseI TTAA 4 cut(s) 167, 383, 495, 858
MslI CAYNNNNRTG 2 cut(s) 603, 819
Msp20I TGGCCA 1 cut(s) 15
MspA1I CMGCKG 1 cut(s) 559
MwoI GCNNNNNNNGC 4 cut(s) 562, 643, 798, 807
NcoI CCATGG 1 cut(s) 223
NdeII GATC 3 cut(s) 273, 517, 713
NlaIII CATG 6 cut(s) 112, 227, 290, 592, 602, 820
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 3 cut(s) 431, 743, 812
NsbI TGCGCA 1 cut(s) 791
NspI RCATGY 2 cut(s) 112, 290
PciI ACATGT 1 cut(s) 108
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 403
PflMI CCANNNNNTGG 1 cut(s) 22
PkrI GCNGC 4 cut(s) 30, 201, 558, 769
PleI GAGTC 2 cut(s) 89, 236
PpsI GAGTC 2 cut(s) 89, 236
Ppu21I YACGTR 1 cut(s) 568
PscI ACATGT 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 508
PstI CTGCAG 2 cut(s) 204, 682
PvuII CAGCTG 1 cut(s) 559
RsaI GTAC 3 cut(s) 421, 491, 587
RsaNI GTAC 3 cut(s) 420, 490, 586
RseI CAYNNNNRTG 2 cut(s) 603, 819
SaqAI TTAA 4 cut(s) 167, 383, 495, 858
SatI GCNGC 4 cut(s) 29, 200, 557, 768
Sau3AI GATC 3 cut(s) 273, 517, 713
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 2 cut(s) 89, 237
SduI GDGCHC 1 cut(s) 145
SetI ASST 7 cut(s) 64, 433, 471, 561, 570, 694, 864
SfaNI GCATC 1 cut(s) 811
SfcI CTRYAG 2 cut(s) 200, 678
SinI GGWCC 1 cut(s) 508
SmiI ATTTAAAT 1 cut(s) 384
SmiMI CAYNNNNRTG 2 cut(s) 603, 819
Sse9I AATT 6 cut(s) 262, 327, 385, 409, 497, 652
SspI AATATT 1 cut(s) 165
SspMI CTAG 2 cut(s) 531, 603
StyI CCWWGG 1 cut(s) 223
SwaI ATTTAAAT 1 cut(s) 384
TaaI ACNGT 7 cut(s) 47, 154, 193, 394, 437, 585, 884
TaiI ACGT 3 cut(s) 433, 471, 570
TaqII GACCGA 1 cut(s) 525
TasI AATT 6 cut(s) 262, 327, 385, 409, 497, 652
TatI WGTACW 2 cut(s) 489, 585
TfiI GAWTC 1 cut(s) 403
Tru1I TTAA 4 cut(s) 167, 383, 495, 858
Tru9I TTAA 4 cut(s) 167, 383, 495, 858
TseFI GTSAC 3 cut(s) 431, 743, 812
TseI GCWGC 4 cut(s) 28, 199, 556, 767
Tsp45I GTSAC 3 cut(s) 431, 743, 812
TspDTI ATGAA 4 cut(s) 124, 587, 605, 690
Van91I CCANNNNNTGG 1 cut(s) 22
VneI GTGCAC 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 508
VspI ATTAAT 1 cut(s) 167
XapI RAATTY 2 cut(s) 385, 652
XceI RCATGY 2 cut(s) 112, 290
XmnI GAANNNNTTC 1 cut(s) 413
XspI CTAG 2 cut(s) 531, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.