Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016615

Physical Location & Seq

Genomic Coordinates Reverse (-)

16698041 .. 16700309

Gene Structure 2269 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCGGCGACGAGCGAGCACACCATCTTGCAATTTGTGTCTCCGTCATCAACGGCGTCCGCTACAACCTCTGTACTCACGGCGAGGATCCACCCTCTCGTTATCTTTAACGTCTGTGATTGCTTCGTGAGACGTCCTGACTCAGCTGAACGAGTCATCGGAACTCTCCTCGGATCTATCTTACCTGACGGAACCGTCGATATCCGCAATTCATACGCCGTCCCTCACAATGAATCATCCGATCAGGTTGCTGTGGATATTGATTACCACCACAATATGTTAGCTTCACACCTTAAGGTGAATTCAAAGGAAACTATTGTCGGCTGGTATTCAACTGGTGCTGGGGTTAATGGCGGTAGTTCGCTGATTCATGATTTCTATGCTAGAGAAGTACCCAACCCAATTCACCTAACTGTGGATACTGGGTTTACTAATGGTGAGGGTACTATCAAAGCTTTTGTCTCTTCAAACCTCTCACTCGGTGATCGACAACTCGTTGCACATTTTCAAGAGATTCCTGTTGATCTCCGCATGGTTGATGCTGAGAGAGTCGGATTCGATGTACTTAAGGCAACATCTGTTGACAAACTCCCAAATGACTTGGAAGGAATGGAGTTAACAATGGAGAGGCTGTTAACTCTAATCAACGATGTCTACAAATATGTTGACAGTGTCGTGGGAGGTCAAATAGCTCCAGACAACAACATTGGACGATTCATTGCAGATGCAGTAGCCTCCCTTCCCAAGTTACCTCCACAAGTCTTCGATAACCTCGTGAATGATAGTCTCCAGGACCAATTGCTTCTGTTGTACCTATCAAGCATAACAAGGACACAGTTGAGTCTAGCGGAGAAGCTAAACACAGCTGCTCAAATGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

293

Amino Acids

31.86

Weight (kDa)

4.92

Isoelectric Point (pI)

30.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	24 - 133	3.7e-28	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	180 - 287	1.3e-28	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39990
fragaria_vesca	FvH4_7g24110
malus_domestica	MD01G1148100.v1.1 MD07G1215300.v1.1
prunus_persica	Prupe.2G247200_v2.0.a1
pyrus_communis	pycom01g16690 pycom07g19760
rosa_chinensis	RchiOBHm_Chr1g0369531
rosa_laevigata	RLG00000027121
rosa_roxburghii	Rroxscaffold_4G00287550
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1BG322900 Rh1DG353700
rosa_wichuraiana	Rw1G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	136
AccI	GTMKAC	1 cut(s)	654
AciI	CCGC	6 cut(s)	5, 60, 205, 354, 529, 848
AclWI	GGATC	3 cut(s)	82, 95, 181
AcsI	RAATTY	1 cut(s)	301
AcyI	GRCGYC	2 cut(s)	56, 133
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	5 cut(s)	75, 393, 445, 564, 812
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflII	CTTAAG	2 cut(s)	293, 566
AgsI	TTSAA	4 cut(s)	306, 333, 468, 509
AjnI	CCWGG	1 cut(s)	789
AluBI	AGCT	6 cut(s)	146, 284, 455, 692, 856, 866
AluI	AGCT	6 cut(s)	146, 284, 455, 692, 856, 866
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	4 cut(s)	45, 124, 466, 791
AlwI	GGATC	3 cut(s)	82, 95, 181
ApeKI	GCWGC	1 cut(s)	866
ApoI	RAATTY	1 cut(s)	301
ArsI	GACNNNNNNTTYG	2 cut(s)	444, 476
AspS9I	GGNCC	1 cut(s)	793
AsuHPI	GGTGA	4 cut(s)	310, 398, 449, 494
AvaII	GGWCC	1 cut(s)	793
BamHI	GGATCC	1 cut(s)	87
BarI	GAAGNNNNNNTAC	2 cut(s)	723, 755
BauI	CACGAG	1 cut(s)	773
BbsI	GAAGAC	1 cut(s)	754
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	853
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	3 cut(s)	69, 96, 203
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	791
BciVI	GTATCC	1 cut(s)	412
BcoDI	GTCTC	4 cut(s)	45, 124, 466, 791
BfaI	CTAG	2 cut(s)	384, 845
BfrI	CTTAAG	2 cut(s)	293, 566
BfuI	GTATCC	1 cut(s)	412
BisI	GCNGC	2 cut(s)	6, 867
BlsI	GCNGC	2 cut(s)	7, 868
Bme1390I	CCNGG	1 cut(s)	791
Bme18I	GGWCC	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	89, 193
BmrFI	CCNGG	1 cut(s)	791
BmrI	ACTGGG	1 cut(s)	432
BmsI	GCATC	2 cut(s)	529, 715
BmuI	ACTGGG	1 cut(s)	432
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	2 cut(s)	678, 773
BsaHI	GRCGYC	2 cut(s)	56, 133
BsaJI	CCNNGG	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	2 cut(s)	340, 427
Bse3DI	GCAATG	1 cut(s)	717
BseBI	CCWGG	1 cut(s)	791
BseDI	CCNNGG	1 cut(s)	169
BseGI	GGATG	1 cut(s)	236
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	2 cut(s)	156, 534
BseNI	ACTGG	2 cut(s)	340, 427
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	1 cut(s)	853
BseYI	CCCAGC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	4 cut(s)	45, 124, 466, 791
BsmBI	CGTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	5 cut(s)	87, 173, 241, 484, 523
BspACI	CCGC	6 cut(s)	5, 60, 205, 354, 529, 848
BspCNI	CTCAG	2 cut(s)	155, 535
BspHI	TCATGA	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	89, 193
BspPI	GGATC	3 cut(s)	82, 95, 181
BspTI	CTTAAG	2 cut(s)	293, 566
BsrDI	GCAATG	1 cut(s)	717
BsrI	ACTGG	2 cut(s)	340, 427
BssECI	CCNNGG	1 cut(s)	169
BssMI	GATC	5 cut(s)	87, 173, 241, 484, 523
BssNI	GRCGYC	2 cut(s)	56, 133
BssSI	CACGAG	1 cut(s)	773
Bst2BI	CACGAG	1 cut(s)	773
Bst2UI	CCWGG	1 cut(s)	791
Bst4CI	ACNGT	4 cut(s)	196, 415, 671, 837
Bst6I	CTCTTC	1 cut(s)	469
BstACI	GRCGYC	2 cut(s)	56, 133
BstAFI	CTTAAG	2 cut(s)	293, 566
BstC8I	GCNNGC	1 cut(s)	17
BstDEI	CTNAG	2 cut(s)	142, 543
BstF5I	GGATG	1 cut(s)	236
BstKTI	GATC	5 cut(s)	90, 176, 244, 487, 526
BstMAI	GTCTC	4 cut(s)	45, 124, 466, 791
BstMBI	GATC	5 cut(s)	87, 173, 241, 484, 523
BstNI	CCWGG	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	789
BstV1I	GCAGC	1 cut(s)	853
BstV2I	GAAGAC	1 cut(s)	754
BstX2I	RGATCY	2 cut(s)	87, 173
BstYI	RGATCY	2 cut(s)	87, 173
BsuI	GTATCC	1 cut(s)	412
BtsCI	GGATG	1 cut(s)	236
BtsIMutI	CAGTG	1 cut(s)	676
Cac8I	GCNNGC	1 cut(s)	17
CciI	TCATGA	1 cut(s)	370
Cfr13I	GGNCC	1 cut(s)	793
CseI	GACGC	1 cut(s)	45
Csp6I	GTAC	5 cut(s)	74, 392, 444, 563, 811
CviAII	CATG	2 cut(s)	371, 532
CviJI	RGCY	9 cut(s)	146, 284, 324, 455, 631, 692, 734, 856, 866
CviKI_1	RGCY	9 cut(s)	146, 284, 324, 455, 631, 692, 734, 856, 866
CviQI	GTAC	5 cut(s)	74, 392, 444, 563, 811
DdeI	CTNAG	2 cut(s)	142, 543
DpnI	GATC	5 cut(s)	89, 175, 243, 486, 525
DpnII	GATC	5 cut(s)	87, 173, 241, 484, 523
DraIII	CACNNNGTG	1 cut(s)	482
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	793
EcoRI	GAATTC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	789
EcoRV	GATATC	1 cut(s)	202
Esp3I	CGTCTC	1 cut(s)	124
FaeI	CATG	2 cut(s)	374, 535
FaiI	YATR	8 cut(s)	214, 278, 372, 381, 533, 663, 824, 880
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	370, 531
FblI	GTMKAC	1 cut(s)	654
Fnu4HI	GCNGC	2 cut(s)	6, 867
FokI	GGATG	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	6, 867
FspBI	CTAG	2 cut(s)	384, 845
GluI	GCNGC	2 cut(s)	6, 867
GsaI	CCCAGC	1 cut(s)	345
GsuI	CTGGAG	2 cut(s)	678, 773
HgaI	GACGC	1 cut(s)	45
Hin1I	GRCGYC	2 cut(s)	56, 133
Hin1II	CATG	2 cut(s)	374, 535
HincII	GTYRAC	4 cut(s)	583, 618, 636, 667
HindII	GTYRAC	4 cut(s)	583, 618, 636, 667
HindIII	AAGCTT	1 cut(s)	453
HinfI	GANTC	9 cut(s)	140, 153, 233, 367, 514, 549, 555, 714, 841
HpaI	GTTAAC	2 cut(s)	618, 636
HphI	GGTGA	4 cut(s)	310, 398, 449, 494
Hpy166II	GTNNAC	6 cut(s)	429, 583, 618, 636, 655, 667
Hpy188I	TCNGA	4 cut(s)	161, 173, 241, 554
Hpy188III	TCNNGA	6 cut(s)	127, 137, 371, 509, 695, 775
Hpy8I	GTNNAC	6 cut(s)	429, 583, 618, 636, 655, 667
Hpy99I	CGWCG	2 cut(s)	13, 200
HpyAV	CCTTC	2 cut(s)	599, 749
HpyCH4III	ACNGT	4 cut(s)	196, 415, 671, 837
HpyCH4IV	ACGT	2 cut(s)	111, 133
HpyCH4V	TGCA	4 cut(s)	31, 500, 722, 728
HpyF3I	CTNAG	2 cut(s)	142, 543
HpySE526I	ACGT	2 cut(s)	111, 133
Hsp92I	GRCGYC	2 cut(s)	56, 133
Hsp92II	CATG	2 cut(s)	374, 535
KspAI	GTTAAC	2 cut(s)	618, 636
Kzo9I	GATC	5 cut(s)	87, 173, 241, 484, 523
LmnI	GCTCC	1 cut(s)	697
Lsp1109I	GCAGC	1 cut(s)	853
LweI	GCATC	2 cut(s)	529, 715
MaeI	CTAG	2 cut(s)	384, 845
MaeII	ACGT	2 cut(s)	111, 133
MaeIII	GTNAC	1 cut(s)	747
MalI	GATC	5 cut(s)	89, 175, 243, 486, 525
MboI	GATC	5 cut(s)	87, 173, 241, 484, 523
MboII	GAAGA	2 cut(s)	456, 754
MfeI	CAATTG	1 cut(s)	797
MflI	RGATCY	2 cut(s)	87, 173
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	5 cut(s)	32, 208, 301, 402, 797
MlyI	GAGTC	4 cut(s)	134, 162, 558, 850
MmeI	TCCRAC	1 cut(s)	532
MseI	TTAA	6 cut(s)	108, 294, 348, 567, 617, 635
MspA1I	CMGCKG	2 cut(s)	146, 866
MspCI	CTTAAG	2 cut(s)	293, 566
MspR9I	CCNGG	1 cut(s)	791
MunI	CAATTG	1 cut(s)	797
MvaI	CCWGG	1 cut(s)	791
NdeII	GATC	5 cut(s)	87, 173, 241, 484, 523
NlaIII	CATG	2 cut(s)	374, 535
NlaIV	GGNNCC	2 cut(s)	89, 193
PagI	TCATGA	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 771
PfeI	GAWTC	5 cut(s)	233, 367, 514, 555, 714
PflFI	GACNNNGTC	1 cut(s)	671
PfoI	TCCNGGA	1 cut(s)	789
PkrI	GCNGC	2 cut(s)	7, 868
PleI	GAGTC	4 cut(s)	134, 161, 557, 849
PpsI	GAGTC	4 cut(s)	134, 161, 557, 849
Psp6I	CCWGG	1 cut(s)	789
PspFI	CCCAGC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	789
PspN4I	GGNNCC	2 cut(s)	89, 193
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	87, 173
PsyI	GACNNNGTC	1 cut(s)	671
PvuII	CAGCTG	2 cut(s)	146, 866
RsaI	GTAC	5 cut(s)	75, 393, 445, 564, 812
RsaNI	GTAC	5 cut(s)	74, 392, 444, 563, 811
SaqAI	TTAA	6 cut(s)	108, 294, 348, 567, 617, 635
SatI	GCNGC	2 cut(s)	6, 867
Sau3AI	GATC	5 cut(s)	87, 173, 241, 484, 523
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	4 cut(s)	134, 162, 558, 850
ScrFI	CCNGG	1 cut(s)	791
SduI	GDGCHC	1 cut(s)	21
SfaNI	GCATC	2 cut(s)	529, 715
SinI	GGWCC	1 cut(s)	793
SmlI	CTYRAG	2 cut(s)	293, 566
SmoI	CTYRAG	2 cut(s)	293, 566
Sse9I	AATT	5 cut(s)	32, 208, 301, 402, 797
SsiI	CCGC	6 cut(s)	5, 60, 205, 354, 529, 848
SspMI	CTAG	2 cut(s)	384, 845
StyD4I	CCNGG	1 cut(s)	789
TaaI	ACNGT	4 cut(s)	196, 415, 671, 837
TaiI	ACGT	2 cut(s)	114, 136
TaqI	TCGA	4 cut(s)	198, 487, 558, 765
TasI	AATT	5 cut(s)	32, 208, 301, 402, 797
TatI	WGTACW	2 cut(s)	73, 562
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	5 cut(s)	233, 367, 514, 555, 714
Tru1I	TTAA	6 cut(s)	108, 294, 348, 567, 617, 635
Tru9I	TTAA	6 cut(s)	108, 294, 348, 567, 617, 635
TscAI	CASTG	1 cut(s)	676
TseI	GCWGC	1 cut(s)	866
TspDTI	ATGAA	4 cut(s)	201, 246, 359, 706
TspGWI	ACGGA	2 cut(s)	33, 204
TspRI	CASTG	1 cut(s)	676
Tth111I	GACNNNGTC	1 cut(s)	671
Vha464I	CTTAAG	2 cut(s)	293, 566
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	654
XspI	CTAG	2 cut(s)	384, 845
ZraI	GACGTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.