Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

46846299 .. 46850063

Gene Structure 3765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0351100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGGAAGGAGAAAACCTAGCAGCGATGGTCCCATTAACATTGACTCCGACTCCGAACCCGAGTCCGACCTGAAGTGCTCGATTTCAGATTTGATGAGTGTTGTATCCTGCAACAGAAATTTACAATGTTGGATGCATGTATTAGCAGCTTCGAAAGCTCAAAGACAGAGCTTGACTCGGGGAGAAACTGAAGAGATCAAAAAGATATCCCCATGCTTTTTAACTTTTTCTCCTCACCGCCAGAGATCAACGAGGTGTGTTAAGAGCAAGTATGTCAACCGTGAAGTGTCAAGAAAAACACAGAACCAAGACACTAAAACGTGTTCAGTGTCAAGAAGAAAACCGGTGCCAGTCTCTCGAGCTTGTAGAGTGTCACGGAAGAAACAGAAGCTAGGCTCTGAGGCCTTTGAGTGCTACTTTGAGAACTTATGGAAGAGCTTCTCTGAGGACAAGAAAACTTCCTGCACATACCTTGACTGTTTATGGTTTTCCTTGTACATTAAACCAACCACCACAGACAAGGTGCTAACCTGGATTAAGAAGAAGCATATTTTTTCAAAGAAATATGTTTTTGTTCCTATTGTGTGCTGGAGCCACTGGAACCTACTAATATTGTGTCATTTTGGTGAGAATCTCGAATCAAAGACCCAAAGACCATGCATGTTGTTGCTTGATTCTCTTGAAATGGCAGATCCGAGGAGGCTCGAACCAAATATAAGAAAATTTGTAGTGGACATCTTTAGAGAAGAGGGTAGGCCTGAGAATATGAATCTTCTGAGAAAAATTCCTCTTTTGATACCTAAGGTGCCACAGCAGAGAAATGATGAGGAATGTGGTAATTTTGTTCTCTACTTCATTAATTTGTTCACGGAGAGTGCTCCGCAGAATTTTAGCATGGAGGGCTACCCTTACTTTATGAAGAAAAACTGGTTTACATATGAAAGCTTGGATTGCTTCTGCCAGGAACTCTATTCCTCAGCAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

328

Amino Acids

38.48

Weight (kDa)

9.18

Isoelectric Point (pI)

61.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	173 - 307	3.5e-11	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 805
AciI	CCGC	2 cut(s)	238, 881
AclWI	GGATC	1 cut(s)	686
AcsI	RAATTY	4 cut(s)	118, 722, 783, 886
AcuI	CTGAAG	2 cut(s)	92, 210
AfaI	GTAC	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	320
AgeI	ACCGGT	1 cut(s)	343
AgsI	TTSAA	2 cut(s)	558, 683
AjnI	CCWGG	2 cut(s)	530, 960
AluBI	AGCT	7 cut(s)	149, 158, 171, 362, 391, 438, 945
AluI	AGCT	7 cut(s)	149, 158, 171, 362, 391, 438, 945
Alw21I	GWGCWC	2 cut(s)	80, 880
Alw26I	GTCTC	1 cut(s)	358
AlwI	GGATC	1 cut(s)	686
Ama87I	CYCGRG	3 cut(s)	59, 177, 357
AoxI	GGCC	2 cut(s)	402, 755
ApeKI	GCWGC	2 cut(s)	21, 146
ApoI	RAATTY	4 cut(s)	118, 722, 783, 886
AseI	ATTAAT	1 cut(s)	858
AsiGI	ACCGGT	1 cut(s)	343
Asp700I	GAANNNNTTC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	227, 638
AsuII	TTCGAA	1 cut(s)	152
AvaI	CYCGRG	3 cut(s)	59, 177, 357
AvaII	GGWCC	1 cut(s)	29
AxyI	CCTNAGG	1 cut(s)	801
BanI	GGYRCC	2 cut(s)	346, 805
Bbv12I	GWGCWC	2 cut(s)	80, 880
BbvCI	CCTCAGC	1 cut(s)	976
BbvI	GCAGC	2 cut(s)	33, 158
BccI	CCATC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	532, 962
BciVI	GTATCC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	358
BfaI	CTAG	2 cut(s)	18, 392
BfuI	GTATCC	1 cut(s)	115
BisI	GCNGC	2 cut(s)	22, 147
BlsI	GCNGC	2 cut(s)	23, 148
Bme1390I	CCNGG	2 cut(s)	532, 962
Bme18I	GGWCC	1 cut(s)	29
BmeT110I	CYCGRG	3 cut(s)	59, 177, 357
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	5 cut(s)	31, 348, 593, 602, 807
BmrFI	CCNGG	2 cut(s)	532, 962
BmsI	GCATC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	160, 192
BpmI	CTGGAG	1 cut(s)	610
Bpu10I	CCTNAGC	1 cut(s)	976
Bpu14I	TTCGAA	1 cut(s)	152
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	343
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 35, 59, 65, 214, 244
Bse118I	RCCGGY	1 cut(s)	343
Bse1I	ACTGG	3 cut(s)	350, 602, 932
Bse21I	CCTNAGG	1 cut(s)	801
BseBI	CCWGG	2 cut(s)	532, 962
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	1 cut(s)	138
BseMII	CTCAG	4 cut(s)	390, 435, 750, 767
BseNI	ACTGG	3 cut(s)	350, 602, 932
BseRI	GAGGAG	2 cut(s)	222, 712
BseXI	GCAGC	2 cut(s)	33, 158
BsgI	GTGCAG	1 cut(s)	448
BshFI	GGCC	2 cut(s)	404, 757
BshNI	GGYRCC	2 cut(s)	346, 805
BshTI	ACCGGT	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	80, 880
BsiHKCI	CYCGRG	3 cut(s)	59, 177, 357
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	358
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	404, 757
BsoBI	CYCGRG	3 cut(s)	59, 177, 357
Bsp119I	TTCGAA	1 cut(s)	152
Bsp1286I	GDGCHC	2 cut(s)	80, 880
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	3 cut(s)	195, 245, 691
BspACI	CCGC	2 cut(s)	238, 881
BspANI	GGCC	2 cut(s)	404, 757
BspCNI	CTCAG	4 cut(s)	391, 436, 751, 768
BspLI	GGNNCC	5 cut(s)	31, 348, 593, 602, 807
BspPI	GGATC	1 cut(s)	686
BspQI	GCTCTTC	1 cut(s)	428
BspT104I	TTCGAA	1 cut(s)	152
BspT107I	GGYRCC	2 cut(s)	346, 805
BsrFI	RCCGGY	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	3 cut(s)	350, 602, 932
BssAI	RCCGGY	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	3 cut(s)	195, 245, 691
Bst2UI	CCWGG	2 cut(s)	532, 962
Bst4CI	ACNGT	2 cut(s)	281, 479
Bst6I	CTCTTC	3 cut(s)	186, 428, 741
BstAUI	TGTACA	1 cut(s)	495
BstBI	TTCGAA	1 cut(s)	152
BstDEI	CTNAG	6 cut(s)	399, 444, 759, 776, 801, 976
BstF5I	GGATG	1 cut(s)	138
BstKTI	GATC	3 cut(s)	198, 248, 694
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	195, 245, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 900, 951
BstNI	CCWGG	2 cut(s)	532, 962
BstNSI	RCATGY	2 cut(s)	140, 664
BstSCI	CCNGG	2 cut(s)	530, 960
BstV1I	GCAGC	2 cut(s)	33, 158
BstX2I	RGATCY	1 cut(s)	691
BstYI	RGATCY	1 cut(s)	691
Bsu36I	CCTNAGG	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	115
BsuRI	GGCC	2 cut(s)	404, 757
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	138
BtsIMutI	CAGTG	2 cut(s)	333, 595
Cfr10I	RCCGGY	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	496
CspAI	ACCGGT	1 cut(s)	343
CviAII	CATG	5 cut(s)	137, 213, 657, 661, 895
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	6 cut(s)	399, 444, 759, 776, 801, 976
DpnI	GATC	3 cut(s)	197, 247, 693
DpnII	GATC	3 cut(s)	195, 245, 691
Eam1104I	CTCTTC	3 cut(s)	186, 428, 741
EarI	CTCTTC	3 cut(s)	186, 428, 741
Eco147I	AGGCCT	2 cut(s)	404, 757
Eco32I	GATATC	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	2 cut(s)	92, 210
Eco81I	CCTNAGG	1 cut(s)	801
Eco88I	CYCGRG	3 cut(s)	59, 177, 357
EcoRII	CCWGG	2 cut(s)	530, 960
EcoRV	GATATC	1 cut(s)	207
EcoT22I	ATGCAT	2 cut(s)	138, 662
FaeI	CATG	5 cut(s)	140, 216, 660, 664, 898
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	5 cut(s)	136, 212, 656, 660, 894
FauNDI	CATATG	1 cut(s)	937
Fnu4HI	GCNGC	2 cut(s)	22, 147
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	2 cut(s)	22, 147
FspBI	CTAG	2 cut(s)	18, 392
GluI	GCNGC	2 cut(s)	22, 147
GsuI	CTGGAG	1 cut(s)	610
HaeIII	GGCC	2 cut(s)	404, 757
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	5 cut(s)	140, 216, 660, 664, 898
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	943
HinfI	GANTC	8 cut(s)	44, 50, 62, 175, 631, 638, 674, 769
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	227, 638
Hpy166II	GTNNAC	4 cut(s)	277, 733, 867, 933
Hpy188I	TCNGA	8 cut(s)	49, 55, 67, 88, 400, 445, 696, 777
Hpy188III	TCNNGA	5 cut(s)	291, 333, 357, 635, 680
Hpy8I	GTNNAC	4 cut(s)	277, 733, 867, 933
HpyCH4III	ACNGT	2 cut(s)	281, 479
HpyCH4IV	ACGT	1 cut(s)	320
HpyCH4V	TGCA	4 cut(s)	111, 136, 465, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 900, 951
HpyF3I	CTNAG	6 cut(s)	399, 444, 759, 776, 801, 976
HpySE526I	ACGT	1 cut(s)	320
Hsp92II	CATG	5 cut(s)	140, 216, 660, 664, 898
Kzo9I	GATC	3 cut(s)	195, 245, 691
LguI	GCTCTTC	1 cut(s)	428
LmnI	GCTCC	2 cut(s)	591, 883
Lsp1109I	GCAGC	2 cut(s)	33, 158
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	2 cut(s)	18, 392
MaeII	ACGT	1 cut(s)	320
MaeIII	GTNAC	1 cut(s)	372
MalI	GATC	3 cut(s)	197, 247, 693
MboI	GATC	3 cut(s)	195, 245, 691
MboII	GAAGA	8 cut(s)	203, 348, 391, 445, 553, 758, 764, 931
MflI	RGATCY	1 cut(s)	691
MhlI	GDGCHC	2 cut(s)	80, 880
MluCI	AATT	6 cut(s)	118, 722, 783, 838, 859, 886
MlyI	GAGTC	4 cut(s)	38, 44, 71, 169
MmeI	TCCRAC	3 cut(s)	72, 90, 110
Mph1103I	ATGCAT	2 cut(s)	138, 662
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	6 cut(s)	36, 221, 261, 501, 537, 858
MslI	CAYNNNNRTG	1 cut(s)	624
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	532, 962
MvaI	CCWGG	2 cut(s)	532, 962
MwoI	GCNNNNNNNGC	3 cut(s)	155, 900, 951
NdeI	CATATG	1 cut(s)	937
NdeII	GATC	3 cut(s)	195, 245, 691
NlaIII	CATG	5 cut(s)	140, 216, 660, 664, 898
NlaIV	GGNNCC	5 cut(s)	31, 348, 593, 602, 807
NmuCI	GTSAC	1 cut(s)	372
NsiI	ATGCAT	2 cut(s)	138, 662
NspI	RCATGY	2 cut(s)	140, 664
NspV	TTCGAA	1 cut(s)	152
PaeR7I	CTCGAG	1 cut(s)	357
PceI	AGGCCT	2 cut(s)	404, 757
PciSI	GCTCTTC	1 cut(s)	428
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	4 cut(s)	631, 638, 674, 769
PinAI	ACCGGT	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	23, 148
PleI	GAGTC	4 cut(s)	38, 44, 70, 169
PpsI	GAGTC	4 cut(s)	38, 44, 70, 169
PshBI	ATTAAT	1 cut(s)	858
Psp6I	CCWGG	2 cut(s)	530, 960
PspGI	CCWGG	2 cut(s)	530, 960
PspN4I	GGNNCC	5 cut(s)	31, 348, 593, 602, 807
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	691
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
RseI	CAYNNNNRTG	1 cut(s)	624
SapI	GCTCTTC	1 cut(s)	428
SaqAI	TTAA	6 cut(s)	36, 221, 261, 501, 537, 858
SatI	GCNGC	2 cut(s)	22, 147
Sau3AI	GATC	3 cut(s)	195, 245, 691
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	4 cut(s)	38, 44, 71, 169
ScrFI	CCNGG	2 cut(s)	532, 962
SduI	GDGCHC	2 cut(s)	80, 880
SfaNI	GCATC	1 cut(s)	123
Sfr274I	CTCGAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	152
SinI	GGWCC	1 cut(s)	29
SlaI	CTCGAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	624
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	6 cut(s)	118, 722, 783, 838, 859, 886
SseBI	AGGCCT	2 cut(s)	404, 757
SsiI	CCGC	2 cut(s)	238, 881
SspI	AATATT	1 cut(s)	612
SspMI	CTAG	2 cut(s)	18, 392
StuI	AGGCCT	2 cut(s)	404, 757
StyD4I	CCNGG	2 cut(s)	530, 960
TaaI	ACNGT	2 cut(s)	281, 479
TaiI	ACGT	1 cut(s)	323
TaqI	TCGA	5 cut(s)	80, 152, 358, 636, 705
TasI	AATT	6 cut(s)	118, 722, 783, 838, 859, 886
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	4 cut(s)	631, 638, 674, 769
Tru1I	TTAA	6 cut(s)	36, 221, 261, 501, 537, 858
Tru9I	TTAA	6 cut(s)	36, 221, 261, 501, 537, 858
TscAI	CASTG	2 cut(s)	333, 602
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	2 cut(s)	21, 146
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	4 cut(s)	782, 844, 932, 954
TspGWI	ACGGA	2 cut(s)	391, 884
TspRI	CASTG	2 cut(s)	333, 602
VpaK11BI	GGWCC	1 cut(s)	29
VspI	ATTAAT	1 cut(s)	858
XapI	RAATTY	4 cut(s)	118, 722, 783, 886
XceI	RCATGY	2 cut(s)	140, 664
XhoI	CTCGAG	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	437
XspI	CTAG	2 cut(s)	18, 392
Zsp2I	ATGCAT	2 cut(s)	138, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.