Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

47431666 .. 47435568

Gene Structure 3903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG258600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGGGGAAAGAAGAGGATGTGAAGTTGGGAGCCAACAAGTTCCCAGAGAGGCAGCCCATTGGGACCTCAGCTCAGACAGACAAGGACTACAAGGAGCCACCACCAGCTCCACTGTTTGAGCCTGGTGAGCTCCAGTCATGGTCTTTTTGGAGAGCTGGAATAGCTGAGTTTGTGGCTACCTTCTTGTTCCTCTACATCACTATTTTGACTGTGATGGGGGTCAAAAGGGCACCAAACATGTGCTCTTCTGTGGGTATTCAGGGCATTGCTTGGGCCTTTGGGGGTACCATCTTTGCCCTTGTTTACTGCACTGCTGGAATCTCAGGTGGTCACATAAACCCAGCTGTGACATTCGGTCTCTTCTTGGCAAGGAAACTCTCCCTGACCAGAGCTGTGTTCTATATCGTGATGCAAACCCTTGGGGCAATTGCTGGTGCTGCTGTGGTCAAGGGGTTTGAGGGCAACACCCGGTATGAAGTGCTCGGTGGTGGAGCTAACTCGGTGAACCATGGCTATACCAAGGGTGATGGCCTTGGTGCTGAGATTGTTGGCACTTTTGTTCTGGTCTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAATGCCAGAGACTCCCATGTCCCTGTAAGTACAAGTCACTATTTCTTTTCATATTTGAATTTTTGTTTGTGCTCTTGCTTCCACTGTGCTAATATGCTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

235

Amino Acids

25.39

Weight (kDa)

7.62

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	44 - 211	6.3e-54	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	232, 287
AccI	GTMKAC	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	661
AfaI	GTAC	2 cut(s)	289, 634
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	661
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	8 cut(s)	74, 110, 133, 158, 167, 347, 395, 497
AluI	AGCT	8 cut(s)	74, 110, 133, 158, 167, 347, 395, 497
Alw21I	GWGCWC	4 cut(s)	135, 248, 486, 677
Alw26I	GTCTC	2 cut(s)	365, 606
AoxI	GGCC	2 cut(s)	276, 532
ApeKI	GCWGC	2 cut(s)	55, 440
ApoI	RAATTY	1 cut(s)	661
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	2 cut(s)	66, 276
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	140, 517, 539
AvaII	GGWCC	1 cut(s)	66
BaeGI	GKGCMC	1 cut(s)	235
BanI	GGYRCC	2 cut(s)	232, 287
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	4 cut(s)	135, 248, 486, 677
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	67, 427
BccI	CCATC	3 cut(s)	211, 299, 524
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	365, 606
BfaI	CTAG	1 cut(s)	706
BisI	GCNGC	2 cut(s)	56, 441
BlsI	GCNGC	2 cut(s)	57, 442
Bme1390I	CCNGG	2 cut(s)	126, 472
Bme18I	GGWCC	1 cut(s)	66
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	66, 276
BmiI	GGNNCC	5 cut(s)	34, 67, 99, 234, 289
BmrFI	CCNGG	2 cut(s)	126, 472
BmsI	GCATC	2 cut(s)	402, 583
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	472
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	4 cut(s)	421, 511, 522, 535
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	4 cut(s)	421, 511, 522, 535
BseGI	GGATG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	5 cut(s)	84, 89, 159, 339, 534
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	235
BseXI	GCAGC	2 cut(s)	67, 427
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	278, 534
BshNI	GGYRCC	2 cut(s)	232, 287
BsiHKAI	GWGCWC	4 cut(s)	135, 248, 486, 677
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	79, 608
BsmAI	GTCTC	2 cut(s)	365, 606
BsmFI	GGGAC	2 cut(s)	79, 608
BsnI	GGCC	2 cut(s)	278, 534
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	5 cut(s)	135, 235, 248, 486, 677
Bsp19I	CCATGG	1 cut(s)	511
BspANI	GGCC	2 cut(s)	278, 534
BspCNI	CTCAG	5 cut(s)	83, 88, 160, 338, 535
BspLI	GGNNCC	5 cut(s)	34, 67, 99, 234, 289
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	2 cut(s)	232, 287
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	4 cut(s)	421, 511, 522, 535
BssT1I	CCWWGG	4 cut(s)	421, 511, 522, 535
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	4 cut(s)	117, 214, 577, 689
Bst6I	CTCTTC	3 cut(s)	9, 253, 368
BstDEI	CTNAG	5 cut(s)	70, 75, 168, 325, 543
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	365, 606
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 164, 440, 593
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	124, 470
BstSLI	GKGCMC	1 cut(s)	235
BstV1I	GCAGC	2 cut(s)	67, 427
BsuRI	GGCC	2 cut(s)	278, 534
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	5 cut(s)	113, 312, 573, 588, 685
Cfr13I	GGNCC	2 cut(s)	66, 276
Csp6I	GTAC	2 cut(s)	288, 633
CviAII	CATG	4 cut(s)	141, 241, 512, 620
CviQI	GTAC	2 cut(s)	288, 633
DdeI	CTNAG	5 cut(s)	70, 75, 168, 325, 543
DrdI	GACNNNNNNGTC	1 cut(s)	620
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eam1104I	CTCTTC	3 cut(s)	9, 253, 368
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	3 cut(s)	9, 253, 368
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	4 cut(s)	421, 511, 522, 535
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	4 cut(s)	421, 511, 522, 535
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	4 cut(s)	421, 511, 522, 535
FaeI	CATG	4 cut(s)	144, 244, 515, 623
FaqI	GGGAC	2 cut(s)	79, 608
FatI	CATG	4 cut(s)	140, 240, 511, 619
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	2 cut(s)	56, 441
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	56, 441
FspBI	CTAG	1 cut(s)	706
GluI	GCNGC	2 cut(s)	56, 441
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	278, 534
HapII	CCGG	1 cut(s)	472
Hin1II	CATG	4 cut(s)	144, 244, 515, 623
HinfI	GANTC	2 cut(s)	321, 614
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	3 cut(s)	140, 517, 539
Hpy166II	GTNNAC	3 cut(s)	307, 508, 571
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	1 cut(s)	409
Hpy8I	GTNNAC	3 cut(s)	307, 508, 571
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	4 cut(s)	117, 214, 577, 689
HpyCH4V	TGCA	2 cut(s)	312, 415
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 164, 440, 593
HpyF3I	CTNAG	5 cut(s)	70, 75, 168, 325, 543
Hsp92II	CATG	4 cut(s)	144, 244, 515, 623
KpnI	GGTACC	1 cut(s)	291
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	5 cut(s)	32, 97, 115, 138, 494
Lsp1109I	GCAGC	2 cut(s)	67, 427
LweI	GCATC	2 cut(s)	402, 583
MaeI	CTAG	1 cut(s)	706
MaeIII	GTNAC	3 cut(s)	332, 349, 638
MboII	GAAGA	3 cut(s)	26, 240, 355
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	5 cut(s)	135, 235, 248, 486, 677
MluCI	AATT	2 cut(s)	429, 661
MlyI	GAGTC	1 cut(s)	608
MnlI	CCTC	5 cut(s)	10, 45, 79, 203, 454
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	2 cut(s)	126, 472
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	4 cut(s)	130, 164, 440, 593
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	511
NlaIII	CATG	4 cut(s)	144, 244, 515, 623
NlaIV	GGNNCC	5 cut(s)	34, 67, 99, 234, 289
NmuCI	GTSAC	3 cut(s)	332, 349, 638
NspI	RCATGY	1 cut(s)	244
PciI	ACATGT	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	57, 442
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	66
PscI	ACATGT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	5 cut(s)	34, 67, 99, 234, 289
PspPI	GGNCC	2 cut(s)	66, 276
PspPPI	RGGWCCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	289, 634
RsaNI	GTAC	2 cut(s)	288, 633
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	253
SatI	GCNGC	2 cut(s)	56, 441
Sau96I	GGNCC	2 cut(s)	66, 276
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	126, 472
SduI	GDGCHC	5 cut(s)	135, 235, 248, 486, 677
SfaNI	GCATC	2 cut(s)	402, 583
SinI	GGWCC	1 cut(s)	66
Sse9I	AATT	2 cut(s)	429, 661
SspMI	CTAG	1 cut(s)	706
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	124, 470
StyI	CCWWGG	4 cut(s)	421, 511, 522, 535
TaaI	ACNGT	4 cut(s)	117, 214, 577, 689
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	429, 661
TatI	WGTACW	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	5 cut(s)	120, 319, 580, 595, 692
TseFI	GTSAC	3 cut(s)	332, 349, 638
TseI	GCWGC	2 cut(s)	55, 440
Tsp45I	GTSAC	3 cut(s)	332, 349, 638
TspDTI	ATGAA	2 cut(s)	492, 642
TspRI	CASTG	5 cut(s)	120, 319, 580, 595, 692
VpaK11BI	GGWCC	1 cut(s)	66
XapI	RAATTY	1 cut(s)	661
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	1 cut(s)	706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.