Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

22733243 .. 22735394

Gene Structure 2152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAGGCAAGGAAGAAGACGTTAGAGTTGGAGCTAACAAGTTCCCGGAGAGACAACCAATCGGAACATCAGCTCAGAGTGACAAGGACTACAAGGAACCACCACCAGCTCCGTTTTTCGAACCTGGTGAGCTTTCTTCATGGTCTTTTTGGAGAGCTGGGATCGCTGAGTTCATCGCTACTTTTCTCTTTCTCTACATCACTGTCTTGACTGTTATGGGAGTGAAAAGGTCACCGAACATGTGTGCTTCCGTCGGAATCCAAGGAATCGCTTGGGCTTTCGGTGGTATGATATTTGCCTTAGTCTACTGTACCGCTGGTATCTCCGGTGGACACATCAACCCAGCGGTTACTTTTGGTCTGTTCTTAGCCCGGAAGCTGTCGCTTACTAGAGCTCTGTACTACATAGTGATGCAGTGCTTGGGAGCTATCTGTGGTGCTGGAGTGGTTAAAGGGTTCCAGCCTAAGCAATACCAGGCTCTAGGAGGAGGAGCTAACACTGTGGCTCATGGTTACACCAAGGGAAGTGGTCTTGGAGCTGAGATCATTGGCACATTCGTTCTTGTATACACAGTCTTCTCAGCAACTGACGCCAAGAGAAATGCTCGTGACTCTCATGTCCCTATTCTTGCACCACTCCCAATCGGGTTTGCGGTTTTCTTGGTTCACTTGGCAACCATCCCAATCACTGGCACAGGCATCAACCCAGCTAGAAGCCTTGGAGCTGCAATCATCTACAACAAAGACCATTCCTGGGATGACCACTGGGTGTTTTGGGTTGGCCCCTTCATTGGAGCTGCACTTGCTGCTCTTTACCATGTGGTTGTCATCAGAGCCATCCCCTTCAAGTCCAGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.69

Weight (kDa)

9.14

Isoelectric Point (pI)

34.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	44 - 273	3.5e-86	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccI	GTMKAC	2 cut(s)	306, 567
AciI	CCGC	3 cut(s)	315, 347, 653
AclWI	GGATC	1 cut(s)	170
AcyI	GRCGYC	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	769
AfaI	GTAC	2 cut(s)	313, 401
AfiI	CCNNNNNNNGG	3 cut(s)	689, 754, 791
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	847
AjnI	CCWGG	3 cut(s)	124, 474, 752
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	1 cut(s)	781
ApeKI	GCWGC	3 cut(s)	725, 797, 806
AspS9I	GGNCC	1 cut(s)	782
AsuC2I	CCSGG	2 cut(s)	47, 373
AsuHPI	GGTGA	2 cut(s)	140, 225
AsuII	TTCGAA	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	2 cut(s)	24, 568
Bbv12I	GWGCWC	1 cut(s)	397
BbvI	GCAGC	3 cut(s)	712, 784, 793
BccI	CCATC	2 cut(s)	686, 845
BciT130I	CCWGG	3 cut(s)	126, 476, 754
BcnI	CCSGG	2 cut(s)	47, 373
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	3 cut(s)	390, 482, 711
BisI	GCNGC	3 cut(s)	726, 798, 807
BlsI	GCNGC	3 cut(s)	727, 799, 808
Bme1390I	CCNGG	5 cut(s)	47, 126, 373, 476, 754
BmgT120I	GGNCC	1 cut(s)	782
BmiI	GGNNCC	3 cut(s)	99, 458, 784
BmrFI	CCNGG	5 cut(s)	47, 126, 373, 476, 754
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	2 cut(s)	402, 708
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	2 cut(s)	24, 568
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	47, 373
BsaHI	GRCGYC	1 cut(s)	591
BsaJI	CCNNGG	4 cut(s)	262, 519, 718, 753
BsaWI	WCCGGW	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 754, 791
Bse1I	ACTGG	2 cut(s)	694, 770
BseBI	CCWGG	3 cut(s)	126, 476, 754
BseDI	CCNNGG	4 cut(s)	262, 519, 718, 753
BseGI	GGATG	3 cut(s)	678, 763, 837
BseLI	CCNNNNNNNGG	3 cut(s)	689, 754, 791
BseMII	CTCAG	4 cut(s)	89, 159, 531, 594
BseNI	ACTGG	2 cut(s)	694, 770
BseRI	GAGGAG	2 cut(s)	501, 504
BseXI	GCAGC	3 cut(s)	712, 784, 793
BseYI	CCCAGC	3 cut(s)	158, 343, 706
BsgI	GTGCAG	1 cut(s)	783
BshFI	GGCC	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	3 cut(s)	47, 327, 373
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	689, 754, 791
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	1 cut(s)	783
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	162, 543
BspACI	CCGC	3 cut(s)	315, 347, 653
BspANI	GGCC	1 cut(s)	783
BspCNI	CTCAG	4 cut(s)	88, 160, 532, 593
BspLI	GGNNCC	3 cut(s)	99, 458, 784
BspPI	GGATC	1 cut(s)	170
BspT104I	TTCGAA	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	694, 770
BssECI	CCNNGG	4 cut(s)	262, 519, 718, 753
BssMI	GATC	2 cut(s)	162, 543
BssNAI	GTATAC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	591
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	3 cut(s)	262, 519, 718
Bst1107I	GTATAC	1 cut(s)	568
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	3 cut(s)	126, 476, 754
Bst4CI	ACNGT	5 cut(s)	205, 214, 311, 502, 574
BstACI	GRCGYC	1 cut(s)	591
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	120
BstDEI	CTNAG	7 cut(s)	75, 168, 301, 367, 465, 540, 580
BstEII	GGTNACC	1 cut(s)	231
BstF5I	GGATG	3 cut(s)	678, 763, 837
BstKTI	GATC	2 cut(s)	165, 546
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	162, 543
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
BstNI	CCWGG	3 cut(s)	126, 476, 754
BstNSI	RCATGY	1 cut(s)	244
BstPI	GGTNACC	1 cut(s)	231
BstSCI	CCNGG	5 cut(s)	45, 124, 371, 474, 752
BstV1I	GCAGC	3 cut(s)	712, 784, 793
BstV2I	GAAGAC	2 cut(s)	24, 568
BstZ17I	GTATAC	1 cut(s)	568
BsuRI	GGCC	1 cut(s)	783
BtgZI	GCGATG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	678, 763, 837
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	5 cut(s)	201, 422, 498, 687, 763
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr13I	GGNCC	1 cut(s)	782
CseI	GACGC	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	124
Csp6I	GTAC	2 cut(s)	312, 400
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	5 cut(s)	141, 241, 509, 617, 818
CviQI	GTAC	2 cut(s)	312, 400
DdeI	CTNAG	7 cut(s)	75, 168, 301, 367, 465, 540, 580
DpnI	GATC	2 cut(s)	164, 545
DpnII	GATC	2 cut(s)	162, 543
DraIII	CACNNNGTG	1 cut(s)	769
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
Ecl136II	GAGCTC	1 cut(s)	395
Eco130I	CCWWGG	3 cut(s)	262, 519, 718
Eco24I	GRGCYC	1 cut(s)	397
Eco53kI	GAGCTC	1 cut(s)	395
Eco91I	GGTNACC	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	395
EcoO65I	GGTNACC	1 cut(s)	231
EcoRII	CCWGG	3 cut(s)	124, 474, 752
EcoT14I	CCWWGG	3 cut(s)	262, 519, 718
EcoT38I	GRGCYC	1 cut(s)	397
ErhI	CCWWGG	3 cut(s)	262, 519, 718
FaeI	CATG	5 cut(s)	144, 244, 512, 620, 821
FaiI	YATR	9 cut(s)	142, 218, 242, 290, 407, 510, 568, 618, 819
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	5 cut(s)	140, 240, 508, 616, 817
FblI	GTMKAC	2 cut(s)	306, 567
Fnu4HI	GCNGC	3 cut(s)	726, 798, 807
FokI	GGATG	3 cut(s)	665, 770, 824
FriOI	GRGCYC	1 cut(s)	397
Fsp4HI	GCNGC	3 cut(s)	726, 798, 807
FspBI	CTAG	3 cut(s)	390, 482, 711
GluI	GCNGC	3 cut(s)	726, 798, 807
GsaI	CCCAGC	3 cut(s)	162, 347, 710
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	1 cut(s)	783
HapII	CCGG	3 cut(s)	47, 327, 373
HgaI	GACGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	591
Hin1II	CATG	5 cut(s)	144, 244, 512, 620, 821
HinfI	GANTC	3 cut(s)	258, 267, 611
HpaII	CCGG	3 cut(s)	47, 327, 373
HphI	GGTGA	2 cut(s)	140, 225
Hpy166II	GTNNAC	4 cut(s)	307, 332, 568, 667
Hpy188I	TCNGA	4 cut(s)	65, 78, 257, 833
Hpy188III	TCNNGA	3 cut(s)	208, 608, 852
Hpy8I	GTNNAC	4 cut(s)	307, 332, 568, 667
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	2 cut(s)	796, 853
HpyCH4III	ACNGT	5 cut(s)	205, 214, 311, 502, 574
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	4 cut(s)	415, 632, 728, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
HpyF3I	CTNAG	7 cut(s)	75, 168, 301, 367, 465, 540, 580
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	591
Hsp92II	CATG	5 cut(s)	144, 244, 512, 620, 821
Kzo9I	GATC	2 cut(s)	162, 543
LmnI	GCTCC	7 cut(s)	32, 115, 425, 491, 536, 722, 794
Lsp1109I	GCAGC	3 cut(s)	712, 784, 793
LweI	GCATC	2 cut(s)	402, 708
MabI	ACCWGGT	1 cut(s)	124
MaeI	CTAG	3 cut(s)	390, 482, 711
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	5 cut(s)	80, 231, 349, 512, 608
MalI	GATC	2 cut(s)	164, 545
MboI	GATC	2 cut(s)	162, 543
MboII	GAAGA	4 cut(s)	26, 29, 129, 568
MhlI	GDGCHC	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	2 cut(s)	10, 235
MnlI	CCTC	2 cut(s)	479, 482
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	317, 347
MspI	CCGG	3 cut(s)	47, 327, 373
MspR9I	CCNGG	5 cut(s)	47, 126, 373, 476, 754
MvaI	CCWGG	3 cut(s)	126, 476, 754
MwoI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
NciI	CCSGG	2 cut(s)	47, 373
NdeII	GATC	2 cut(s)	162, 543
NlaIII	CATG	5 cut(s)	144, 244, 512, 620, 821
NlaIV	GGNNCC	3 cut(s)	99, 458, 784
NmuCI	GTSAC	3 cut(s)	80, 231, 608
NspI	RCATGY	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	120
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	2 cut(s)	258, 267
PflMI	CCANNNNNTGG	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	3 cut(s)	727, 799, 808
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PscI	ACATGT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	397
Psp6I	CCWGG	3 cut(s)	124, 474, 752
PspEI	GGTNACC	1 cut(s)	231
PspFI	CCCAGC	3 cut(s)	158, 343, 706
PspGI	CCWGG	3 cut(s)	124, 474, 752
PspN4I	GGNNCC	3 cut(s)	99, 458, 784
PspPI	GGNCC	1 cut(s)	782
PstNI	CAGNNNCTG	1 cut(s)	587
RsaI	GTAC	2 cut(s)	313, 401
RsaNI	GTAC	2 cut(s)	312, 400
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	3 cut(s)	726, 798, 807
Sau3AI	GATC	2 cut(s)	162, 543
Sau96I	GGNCC	1 cut(s)	782
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	5 cut(s)	47, 126, 373, 476, 754
SduI	GDGCHC	1 cut(s)	397
SexAI	ACCWGGT	1 cut(s)	124
SfaNI	GCATC	2 cut(s)	402, 708
SfuI	TTCGAA	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	410
SsiI	CCGC	3 cut(s)	315, 347, 653
SspMI	CTAG	3 cut(s)	390, 482, 711
SstI	GAGCTC	1 cut(s)	397
StyD4I	CCNGG	5 cut(s)	45, 124, 371, 474, 752
StyI	CCWWGG	3 cut(s)	262, 519, 718
TaaI	ACNGT	5 cut(s)	205, 214, 311, 502, 574
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	120
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	2 cut(s)	258, 267
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TscAI	CASTG	5 cut(s)	208, 422, 505, 694, 770
TseFI	GTSAC	3 cut(s)	80, 231, 608
TseI	GCWGC	3 cut(s)	725, 797, 806
Tsp45I	GTSAC	3 cut(s)	80, 231, 608
TspDTI	ATGAA	3 cut(s)	129, 163, 778
TspGWI	ACGGA	2 cut(s)	102, 241
TspRI	CASTG	5 cut(s)	208, 422, 505, 694, 770
Van91I	CCANNNNNTGG	1 cut(s)	689
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	2 cut(s)	306, 567
XspI	CTAG	3 cut(s)	390, 482, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.