Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

16622116 .. 16624843

Gene Structure 2728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1106500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGGGCAAGGAAGAAGATGTGAAGCTTGGAGCAAACAAGTTCCCAGAGAGGCAACCCATTGGGACCTCTGCACAGACACACAAGGACTACAAGGAGCCACCACCAGCTCCATTGTTTGAGCCAGGTGAGCTCACCTCCTGGTCCTTCTACAGAGCTGGAATTGCTGAGTTCATTGCCACCTTCCTGTTCCTCTACATCACCATCCTTACTGTCATGGGTGTCAATAGAACTACTAGCAAGTGTGACTCTGTGGGCATCCAAGGAATTGCTTGGGCCTTTGGTGGGACCATCTTTGCCCTTGTTTACTCCACTGCTGGTATCTCAGGAGGGCACATCAACCCAGCAGTGACCTTTGGGCTCTTTCTGGCAAGGAAACTCTCCCTTACCAGAGCCGTTTTCTACATAGTGATGCAGACCCTTGGTGCAATTGCTGGTGCTGGTGTTGTGAAGGGCTTCCAGAAGAACCAGTATGAGCTTTTGGGTGGTGGGGCCAACCTTGTTAACCATGGCTACACCAAGGGTGATGGCCTTGGAGCTGAGATTGTCGGTACTTTTGTCCTTGTTTACACTGTCTTCTCCGCTACTGATGCCAAGAGGAATGCCAGAGACTCTCATGTCCCTATTTTGGCCCCTCTTCCCATTGGTTTTGCAGTGTTCTTGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGCATCAACCCTGCCAGGAGTCTTGGAGCCGCCATTGTCTACAACAAGGAGCACGCTTGGGATGACCACTGGATCTTCTGGGTTGGACCATTCATTGGTGCTGCTCTTGCTGCTATCTACCACCAGATAGTCATCAGGGCCATTCCTTTCAAGTCCAGGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

287

Amino Acids

30.76

Weight (kDa)

9.08

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	44 - 273	1.1e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	2 cut(s)	582, 726
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	1 cut(s)	672
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	4 cut(s)	285, 628, 689, 791
AgsI	TTSAA	1 cut(s)	847
AjnI	CCWGG	4 cut(s)	124, 140, 710, 851
AluBI	AGCT	7 cut(s)	28, 110, 133, 158, 478, 539, 858
AluI	AGCT	7 cut(s)	28, 110, 133, 158, 478, 539, 858
Alw21I	GWGCWC	2 cut(s)	135, 750
Alw26I	GTCTC	1 cut(s)	603
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	6 cut(s)	276, 492, 529, 630, 672, 834
ApeKI	GCWGC	2 cut(s)	797, 806
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	8 cut(s)	66, 144, 276, 288, 492, 631, 782, 834
AsuHPI	GGTGA	5 cut(s)	127, 140, 193, 536, 679
AvaII	GGWCC	4 cut(s)	66, 144, 288, 782
BaeGI	GKGCMC	1 cut(s)	336
BaeI	ACNNNNGTAYC	2 cut(s)	543, 576
BalI	TGGCCA	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	135, 363
BbsI	GAAGAC	1 cut(s)	568
Bbv12I	GWGCWC	2 cut(s)	135, 750
BbvI	GCAGC	2 cut(s)	784, 793
BccI	CCATC	5 cut(s)	212, 299, 521, 686, 692
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	4 cut(s)	126, 142, 712, 853
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	3 cut(s)	726, 798, 807
BlsI	GCNGC	3 cut(s)	727, 799, 808
Bme1390I	CCNGG	4 cut(s)	126, 142, 712, 853
Bme18I	GGWCC	4 cut(s)	66, 144, 288, 782
BmgT120I	GGNCC	8 cut(s)	66, 144, 276, 288, 492, 631, 782, 834
BmiI	GGNNCC	7 cut(s)	67, 99, 289, 493, 633, 694, 724
BmrFI	CCNGG	4 cut(s)	126, 142, 712, 853
BmsI	GCATC	4 cut(s)	267, 402, 580, 708
BpiI	GAAGAC	1 cut(s)	568
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BsaBI	GATNNNNATC	1 cut(s)	827
BsaJI	CCNNGG	5 cut(s)	262, 421, 508, 519, 532
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	4 cut(s)	285, 628, 689, 791
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	2 cut(s)	469, 770
Bse3DI	GCAATG	1 cut(s)	174
Bse8I	GATNNNNATC	1 cut(s)	827
BseBI	CCWGG	4 cut(s)	126, 142, 712, 853
BseDI	CCNNGG	5 cut(s)	262, 421, 508, 519, 532
BseGI	GGATG	4 cut(s)	204, 258, 678, 763
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	4 cut(s)	285, 628, 689, 791
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	159, 339, 531
BseNI	ACTGG	2 cut(s)	469, 770
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	784, 793
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	1 cut(s)	57
BshFI	GGCC	6 cut(s)	278, 494, 531, 632, 674, 836
BsiHKAI	GWGCWC	2 cut(s)	135, 750
BsiSI	CCGG	2 cut(s)	690, 696
BslFI	GGGAC	3 cut(s)	79, 301, 605
BslI	CCNNNNNNNGG	4 cut(s)	285, 628, 689, 791
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	3 cut(s)	79, 301, 605
BsmI	GAATGC	1 cut(s)	607
BsnI	GGCC	6 cut(s)	278, 494, 531, 632, 674, 836
Bsp1286I	GDGCHC	4 cut(s)	135, 336, 363, 750
Bsp143I	GATC	1 cut(s)	768
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	2 cut(s)	582, 726
BspANI	GGCC	6 cut(s)	278, 494, 531, 632, 674, 836
BspCNI	CTCAG	3 cut(s)	160, 338, 532
BspLI	GGNNCC	7 cut(s)	67, 99, 289, 493, 633, 694, 724
BspPI	GGATC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	2 cut(s)	469, 770
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	5 cut(s)	262, 421, 508, 519, 532
BssMI	GATC	1 cut(s)	768
BssT1I	CCWWGG	5 cut(s)	262, 421, 508, 519, 532
Bst2UI	CCWGG	4 cut(s)	126, 142, 712, 853
Bst4CI	ACNGT	2 cut(s)	214, 574
Bst6I	CTCTTC	1 cut(s)	642
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	3 cut(s)	168, 325, 540
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	4 cut(s)	204, 258, 678, 763
BstKTI	GATC	1 cut(s)	771
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	1 cut(s)	768
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 164, 590, 803, 806
BstNI	CCWGG	4 cut(s)	126, 142, 712, 853
BstSCI	CCNGG	4 cut(s)	124, 140, 710, 851
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	784, 793
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuRI	GGCC	6 cut(s)	278, 494, 531, 632, 674, 836
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	4 cut(s)	204, 258, 678, 763
BtsI	GCAGTG	3 cut(s)	312, 354, 660
BtsIMutI	CAGTG	5 cut(s)	312, 354, 570, 660, 763
Cac8I	GCNNGC	1 cut(s)	750
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	8 cut(s)	66, 144, 276, 288, 492, 631, 782, 834
Csp6I	GTAC	1 cut(s)	552
CviAII	CATG	3 cut(s)	217, 509, 617
CviQI	GTAC	1 cut(s)	552
DdeI	CTNAG	3 cut(s)	168, 325, 540
DpnI	GATC	1 cut(s)	770
DpnII	GATC	1 cut(s)	768
DrdI	GACNNNNNNGTC	1 cut(s)	617
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	672
Eam1104I	CTCTTC	1 cut(s)	642
EarI	CTCTTC	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	5 cut(s)	262, 421, 508, 519, 532
Eco24I	GRGCYC	2 cut(s)	135, 363
Eco47I	GGWCC	4 cut(s)	66, 144, 288, 782
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	4 cut(s)	124, 140, 710, 851
EcoT14I	CCWWGG	5 cut(s)	262, 421, 508, 519, 532
EcoT38I	GRGCYC	2 cut(s)	135, 363
ErhI	CCWWGG	5 cut(s)	262, 421, 508, 519, 532
FaeI	CATG	3 cut(s)	220, 512, 620
FaiI	YATR	5 cut(s)	218, 407, 474, 510, 618
FaqI	GGGAC	3 cut(s)	79, 301, 605
FatI	CATG	3 cut(s)	216, 508, 616
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	3 cut(s)	726, 798, 807
FokI	GGATG	4 cut(s)	191, 245, 665, 770
FriOI	GRGCYC	2 cut(s)	135, 363
Fsp4HI	GCNGC	3 cut(s)	726, 798, 807
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	3 cut(s)	726, 798, 807
GsaI	CCCAGC	1 cut(s)	347
HaeIII	GGCC	6 cut(s)	278, 494, 531, 632, 674, 836
HapII	CCGG	2 cut(s)	690, 696
Hin1II	CATG	3 cut(s)	220, 512, 620
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	3 cut(s)	248, 611, 715
HpaI	GTTAAC	1 cut(s)	505
HpaII	CCGG	2 cut(s)	690, 696
HphI	GGTGA	5 cut(s)	127, 140, 193, 536, 679
Hpy166II	GTNNAC	5 cut(s)	307, 505, 568, 667, 736
Hpy188III	TCNNGA	2 cut(s)	327, 460
Hpy8I	GTNNAC	5 cut(s)	307, 505, 568, 667, 736
HpyAV	CCTTC	3 cut(s)	157, 193, 445
HpyCH4III	ACNGT	2 cut(s)	214, 574
HpyCH4V	TGCA	4 cut(s)	74, 415, 428, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 164, 590, 803, 806
HpyF3I	CTNAG	3 cut(s)	168, 325, 540
Hsp92II	CATG	3 cut(s)	220, 512, 620
KspAI	GTTAAC	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	768
LmnI	GCTCC	7 cut(s)	32, 97, 115, 536, 722, 745, 855
Lsp1109I	GCAGC	2 cut(s)	784, 793
LweI	GCATC	4 cut(s)	267, 402, 580, 708
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	245, 349
MalI	GATC	1 cut(s)	770
MboI	GATC	1 cut(s)	768
MboII	GAAGA	6 cut(s)	26, 29, 475, 568, 629, 763
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	4 cut(s)	135, 336, 363, 750
MlsI	TGGCCA	1 cut(s)	674
MluCI	AATT	3 cut(s)	162, 267, 429
MluNI	TGGCCA	1 cut(s)	674
MlyI	GAGTC	3 cut(s)	242, 605, 724
MmeI	TCCRAC	1 cut(s)	760
MnlI	CCTC	7 cut(s)	45, 79, 148, 203, 323, 591, 645
Mox20I	TGGCCA	1 cut(s)	674
MroXI	GAANNNNTTC	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	674
MseI	TTAA	1 cut(s)	504
MslI	CAYNNNNRTG	1 cut(s)	410
Msp20I	TGGCCA	1 cut(s)	674
MspI	CCGG	2 cut(s)	690, 696
MspR9I	CCNGG	4 cut(s)	126, 142, 712, 853
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	607
MvaI	CCWGG	4 cut(s)	126, 142, 712, 853
MwoI	GCNNNNNNNGC	5 cut(s)	130, 164, 590, 803, 806
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	1 cut(s)	768
NlaIII	CATG	3 cut(s)	220, 512, 620
NlaIV	GGNNCC	7 cut(s)	67, 99, 289, 493, 633, 694, 724
NmuCI	GTSAC	2 cut(s)	245, 349
PctI	GAATGC	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	851
PkrI	GCNGC	3 cut(s)	727, 799, 808
PleI	GAGTC	3 cut(s)	242, 605, 723
PpsI	GAGTC	3 cut(s)	242, 605, 723
PpuMI	RGGWCCY	1 cut(s)	66
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	4 cut(s)	124, 140, 710, 851
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	4 cut(s)	124, 140, 710, 851
PspN4I	GGNNCC	7 cut(s)	67, 99, 289, 493, 633, 694, 724
PspPI	GGNCC	8 cut(s)	66, 144, 276, 288, 492, 631, 782, 834
PspPPI	RGGWCCY	1 cut(s)	66
PsuI	RGATCY	1 cut(s)	768
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	410
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	3 cut(s)	726, 798, 807
Sau3AI	GATC	1 cut(s)	768
Sau96I	GGNCC	8 cut(s)	66, 144, 276, 288, 492, 631, 782, 834
SchI	GAGTC	3 cut(s)	242, 605, 724
ScrFI	CCNGG	4 cut(s)	126, 142, 712, 853
SduI	GDGCHC	4 cut(s)	135, 336, 363, 750
SfaNI	GCATC	4 cut(s)	267, 402, 580, 708
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	4 cut(s)	66, 144, 288, 782
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	3 cut(s)	162, 267, 429
SsiI	CCGC	2 cut(s)	582, 726
SspMI	CTAG	1 cut(s)	237
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	4 cut(s)	124, 140, 710, 851
StyI	CCWWGG	5 cut(s)	262, 421, 508, 519, 532
TaaI	ACNGT	2 cut(s)	214, 574
TasI	AATT	3 cut(s)	162, 267, 429
TauI	GCSGC	1 cut(s)	728
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	5 cut(s)	319, 354, 577, 660, 770
TseFI	GTSAC	2 cut(s)	245, 349
TseI	GCWGC	2 cut(s)	797, 806
Tsp45I	GTSAC	2 cut(s)	245, 349
TspDTI	ATGAA	2 cut(s)	163, 778
TspRI	CASTG	5 cut(s)	319, 354, 577, 660, 770
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	4 cut(s)	66, 144, 288, 782
XmiI	GTMKAC	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.