Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

35267555 .. 35271459

Gene Structure 3905 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGGGGAAAGAAGAGGATGTGAAGTTGGGAGCCAACAAGTTCCCAGAGAGGCAGCCCATTGGGACCTCAGCTCAGACAGACAAGGACTACAAGGAGCCACCACCAGCTCCACTGTTTGAGCCTGGTGAGCTCCAGTCATGGTCTTTTTGGAGAGCTGGAATAGCTGAGTTTGTGGCTACCTTCTTGTTCCTCTACATCACTATTTTGACTGTGATGGGGGTCAAAAGGGCACCAAACATGTGCTCTTCTGTGGGTATTCAGGGCATTGCTTGGGCCTTTGGGGGTACCATCTTTGCCCTTGTTTACTGCACTGCTGGAATCTCAGGTGGTCACATAAACCCAGCTGTGACATTCGGTCTCTTCTTGGCAAGGAAACTCTCCCTGACCAGAGCTGTGTTCTATATCGTGATGCAAACCCTTGGGGCAATTGCTGGTGCTGCTGTGGTCAAGGGGTTTGAGGGCAACACCCGGTATGAAGTGCTCGGTGGTGGAGCTAACTCGGTGAACCATGGCTATACCAAGGGTGATGGCCTTGGTGCTGAGATTGTTGGCACTTTTGTTCTGGTCTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAATGCCAGAGACTCCCATGTCCCTATCTTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCTTGGTGCACTTGGCAACCATCCCCATCACTGGAACTGGTATCAACCCTGCTAGGAGCCTTGGAGCTGCCATCATCTACGACAAGGAACATGCATGGGATCATCATTGGGTCTTCTGGGTTGGACCATTCATCGGAGCTGCACTTGCTGCCCTCTACCATCAGATAGTCATCAGAGCCATTCCATTCAAGACCAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

287

Amino Acids

30.87

Weight (kDa)

8.47

Isoelectric Point (pI)

27.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	44 - 274	1.1e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	232, 287
AccI	GTMKAC	1 cut(s)	570
AclWI	GGATC	1 cut(s)	768
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	850
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	124, 854
Alw21I	GWGCWC	4 cut(s)	135, 248, 486, 672
Alw26I	GTCTC	2 cut(s)	365, 606
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	1 cut(s)	768
AoxI	GGCC	2 cut(s)	276, 532
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	5 cut(s)	55, 440, 728, 800, 809
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	66, 276, 785
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	140, 517, 539
AvaII	GGWCC	2 cut(s)	66, 785
BaeGI	GKGCMC	2 cut(s)	235, 672
BanI	GGYRCC	2 cut(s)	232, 287
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	766
Bbv12I	GWGCWC	4 cut(s)	135, 248, 486, 672
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	5 cut(s)	67, 427, 715, 787, 796
BccI	CCATC	7 cut(s)	211, 299, 524, 689, 695, 740, 828
BciT130I	CCWGG	2 cut(s)	126, 856
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	365, 606
BfaI	CTAG	1 cut(s)	714
BisI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
BlsI	GCNGC	5 cut(s)	57, 442, 730, 802, 811
Bme1390I	CCNGG	3 cut(s)	126, 472, 856
Bme18I	GGWCC	2 cut(s)	66, 785
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	66, 276, 785
BmiI	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
BmrFI	CCNGG	3 cut(s)	126, 472, 856
BmsI	GCATC	2 cut(s)	402, 583
BpiI	GAAGAC	1 cut(s)	766
BpmI	CTGGAG	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	830
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	6 cut(s)	421, 511, 522, 535, 721, 855
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 692, 794
Bse1I	ACTGG	3 cut(s)	136, 697, 703
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	2 cut(s)	126, 856
BseDI	CCNNGG	6 cut(s)	421, 511, 522, 535, 721, 855
BseGI	GGATG	2 cut(s)	25, 681
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	5 cut(s)	84, 89, 159, 339, 534
BseNI	ACTGG	3 cut(s)	136, 697, 703
BseSI	GKGCMC	2 cut(s)	235, 672
BseXI	GCAGC	5 cut(s)	67, 427, 715, 787, 796
BseYI	CCCAGC	1 cut(s)	343
BsgI	GTGCAG	2 cut(s)	295, 786
BshFI	GGCC	2 cut(s)	278, 534
BshNI	GGYRCC	2 cut(s)	232, 287
BsiHKAI	GWGCWC	4 cut(s)	135, 248, 486, 672
BsiSI	CCGG	1 cut(s)	472
BslFI	GGGAC	2 cut(s)	79, 608
BslI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BsmAI	GTCTC	2 cut(s)	365, 606
BsmFI	GGGAC	2 cut(s)	79, 608
BsnI	GGCC	2 cut(s)	278, 534
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	5 cut(s)	135, 235, 248, 486, 672
Bsp143I	GATC	1 cut(s)	760
Bsp19I	CCATGG	1 cut(s)	511
BspANI	GGCC	2 cut(s)	278, 534
BspCNI	CTCAG	5 cut(s)	83, 88, 160, 338, 535
BspLI	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
BspPI	GGATC	1 cut(s)	768
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	2 cut(s)	232, 287
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	267
BsrI	ACTGG	3 cut(s)	136, 697, 703
BssECI	CCNNGG	6 cut(s)	421, 511, 522, 535, 721, 855
BssMI	GATC	1 cut(s)	760
BssT1I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
Bst2UI	CCWGG	2 cut(s)	126, 856
Bst4CI	ACNGT	3 cut(s)	117, 214, 577
Bst6I	CTCTTC	3 cut(s)	9, 253, 368
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstDEI	CTNAG	5 cut(s)	70, 75, 168, 325, 543
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	25, 681
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	2 cut(s)	365, 606
BstMBI	GATC	1 cut(s)	760
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
BstNI	CCWGG	2 cut(s)	126, 856
BstNSI	RCATGY	2 cut(s)	244, 755
BstSCI	CCNGG	3 cut(s)	124, 470, 854
BstSLI	GKGCMC	2 cut(s)	235, 672
BstV1I	GCAGC	5 cut(s)	67, 427, 715, 787, 796
BstV2I	GAAGAC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	278, 534
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	25, 681
BtsI	GCAGTG	2 cut(s)	312, 663
BtsIMutI	CAGTG	6 cut(s)	113, 312, 573, 588, 663, 690
Cfr13I	GGNCC	3 cut(s)	66, 276, 785
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	6 cut(s)	141, 241, 512, 620, 752, 756
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	5 cut(s)	70, 75, 168, 325, 543
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
DrdI	GACNNNNNNGTC	1 cut(s)	620
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eam1104I	CTCTTC	3 cut(s)	9, 253, 368
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	3 cut(s)	9, 253, 368
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
Eco24I	GRGCYC	1 cut(s)	135
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	66, 785
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	2 cut(s)	124, 854
EcoT14I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
EcoT22I	ATGCAT	1 cut(s)	757
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
FaeI	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
FaqI	GGGAC	2 cut(s)	79, 608
FatI	CATG	6 cut(s)	140, 240, 511, 619, 751, 755
FblI	GTMKAC	1 cut(s)	570
Fnu4HI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
FokI	GGATG	2 cut(s)	32, 668
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
GsaI	CCCAGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	278, 534
HapII	CCGG	1 cut(s)	472
Hin1II	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
HinfI	GANTC	2 cut(s)	321, 614
HpaII	CCGG	1 cut(s)	472
HphI	GGTGA	3 cut(s)	140, 517, 539
Hpy166II	GTNNAC	4 cut(s)	307, 508, 571, 670
Hpy188I	TCNGA	4 cut(s)	78, 797, 825, 836
Hpy188III	TCNNGA	2 cut(s)	409, 850
Hpy8I	GTNNAC	4 cut(s)	307, 508, 571, 670
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	117, 214, 577
HpyCH4V	TGCA	6 cut(s)	312, 415, 656, 670, 755, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
HpyF3I	CTNAG	5 cut(s)	70, 75, 168, 325, 543
Hsp92II	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	1 cut(s)	760
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	9 cut(s)	32, 97, 115, 138, 494, 640, 717, 725, 797
Lsp1109I	GCAGC	5 cut(s)	67, 427, 715, 787, 796
LweI	GCATC	2 cut(s)	402, 583
MaeI	CTAG	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	332, 349
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	4 cut(s)	26, 240, 355, 766
MfeI	CAATTG	2 cut(s)	429, 645
MhlI	GDGCHC	5 cut(s)	135, 235, 248, 486, 672
MluCI	AATT	2 cut(s)	429, 645
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	6 cut(s)	10, 45, 79, 203, 454, 824
Mph1103I	ATGCAT	1 cut(s)	757
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	1 cut(s)	472
MspR9I	CCNGG	3 cut(s)	126, 472, 856
MunI	CAATTG	2 cut(s)	429, 645
MvaI	CCWGG	2 cut(s)	126, 856
MwoI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	6 cut(s)	144, 244, 515, 623, 755, 759
NlaIV	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
NmuCI	GTSAC	2 cut(s)	332, 349
NsiI	ATGCAT	1 cut(s)	757
NspI	RCATGY	2 cut(s)	244, 755
PciI	ACATGT	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	5 cut(s)	57, 442, 730, 802, 811
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	66
PscI	ACATGT	1 cut(s)	240
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	124, 854
PspFI	CCCAGC	1 cut(s)	343
PspGI	CCWGG	2 cut(s)	124, 854
PspN4I	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
PspPI	GGNCC	3 cut(s)	66, 276, 785
PspPPI	RGGWCCY	1 cut(s)	66
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	253
SatI	GCNGC	5 cut(s)	56, 441, 729, 801, 810
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	3 cut(s)	66, 276, 785
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	126, 472, 856
SduI	GDGCHC	5 cut(s)	135, 235, 248, 486, 672
SfaNI	GCATC	2 cut(s)	402, 583
SinI	GGWCC	2 cut(s)	66, 785
Sse9I	AATT	2 cut(s)	429, 645
SspMI	CTAG	1 cut(s)	714
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	124, 470, 854
StyI	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
TaaI	ACNGT	3 cut(s)	117, 214, 577
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	429, 645
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	6 cut(s)	120, 319, 580, 595, 663, 697
TseFI	GTSAC	2 cut(s)	332, 349
TseI	GCWGC	5 cut(s)	55, 440, 728, 800, 809
Tsp45I	GTSAC	2 cut(s)	332, 349
TspDTI	ATGAA	2 cut(s)	492, 781
TspRI	CASTG	6 cut(s)	120, 319, 580, 595, 663, 697
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	66, 785
XceI	RCATGY	2 cut(s)	244, 755
XmiI	GTMKAC	1 cut(s)	570
XspI	CTAG	1 cut(s)	714
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.