Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

14766689 .. 14769406

Gene Structure 2718 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG173300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGGGTAAGGAAGAGGATGTTAAGGTTGGAGCCACCAAGTTCCCAGAGAAACAACCTTTGGGGACATCAGCTCAGACACACAAGGACTACAAGGACCCACCACCAGCTCCATTGTTTGAACCTCATGAGCTCATCTCATGGTCTTTCTATAGAGCTGGGATTGCCGAGTTTGTGGCCACATTCTTGTTCCTCTACATCAGTGTGTTGACTGTGATGGGGGTCGATAGGGAACCAACCAAGTGTACCTCTGTGGGTGTTCAGGGAATTGCTTGGGCCTTTGGTGGTATGATCTTTGCACTGGTCTACTGTACTGCTGGTATCTCAGGTGGACACATTAACCCAGCTGTGACCTTTGGTCTGTTCCTAGCAAGGAAGCTCTCCCTCACCAGAGCTGTTTTCTACATCAGCATGCAGACCCTTGGAGCCATTGCTGGTGCTGGAGTTGTGAAGGCCTTCCAGAAGACCCAATATGAGCTTTTGGGTGGTGGAGCCAACTATGTGAACCATGGCTACACCAAGGGTGATGGCCTTGGGGCTGAGATTGTTGGCACCTTTGTGCTTGTTTACACTGTCTTCTCTGCTACTGATGCTAAGAGGAAAGCTAGAGACTCTCATGTCCCTATTTTGGCTCCTCTTCCAATTGGGTTTGCTGTGTTCGTGGTTCACTTGGCCACCATCCCCATTACAGGAACTGGCATCAACCCTGCCAGGAGTCTCGGAGCTGCCATCATCTACGACAAGGAGCGTGCTTGGGATGACCAGTGGATCTTCTGGGTTGGACCATTCATTGGTGCTGCACTTGCTGCTATGTACCACCAGATAGTCATCAGAGCCATTCCTTTCAAGTCCAGGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.86

Weight (kDa)

8.94

Isoelectric Point (pI)

26.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	45 - 273	8.5e-81	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	551
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	2 cut(s)	177, 672
AfaI	GTAC	3 cut(s)	247, 313, 815
AfiI	CCNNNNNNNGG	3 cut(s)	628, 689, 791
AgsI	TTSAA	2 cut(s)	122, 847
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	710, 851
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AleI	CACNNNNGTG	1 cut(s)	557
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	603, 722
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	6 cut(s)	177, 276, 453, 529, 672, 855
ApeKI	GCWGC	3 cut(s)	725, 797, 806
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	4 cut(s)	97, 276, 782, 855
AsuHPI	GGTGA	2 cut(s)	379, 536
AvaII	GGWCC	2 cut(s)	97, 782
BalI	TGGCCA	2 cut(s)	179, 674
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	470, 568
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	712, 784, 793
BccI	CCATC	4 cut(s)	211, 521, 686, 737
BciT130I	CCWGG	2 cut(s)	712, 853
BcoDI	GTCTC	2 cut(s)	603, 722
BfaI	CTAG	2 cut(s)	368, 606
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	3 cut(s)	726, 798, 807
BlsI	GCNGC	3 cut(s)	727, 799, 808
Bme1390I	CCNGG	2 cut(s)	712, 853
Bme18I	GGWCC	2 cut(s)	97, 782
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	4 cut(s)	97, 276, 782, 855
BmiI	GGNNCC	7 cut(s)	34, 99, 234, 427, 493, 553, 633
BmrFI	CCNGG	2 cut(s)	712, 853
BmsI	GCATC	2 cut(s)	580, 708
BpiI	GAAGAC	2 cut(s)	470, 568
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	827
BsaJI	CCNNGG	5 cut(s)	421, 508, 519, 532, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 689, 791
Bse1I	ACTGG	3 cut(s)	306, 700, 763
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	827
BseBI	CCWGG	2 cut(s)	712, 853
BseDI	CCNNGG	5 cut(s)	421, 508, 519, 532, 852
BseGI	GGATG	3 cut(s)	25, 678, 763
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	3 cut(s)	628, 689, 791
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	89, 339, 531
BseNI	ACTGG	3 cut(s)	306, 700, 763
BseRI	GAGGAG	1 cut(s)	624
BseXI	GCAGC	3 cut(s)	712, 784, 793
BseYI	CCCAGC	2 cut(s)	158, 343
BsgI	GTGCAG	1 cut(s)	783
BshFI	GGCC	6 cut(s)	179, 278, 455, 531, 674, 857
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	79, 605
BslI	CCNNNNNNNGG	3 cut(s)	628, 689, 791
BsmAI	GTCTC	2 cut(s)	603, 722
BsmFI	GGGAC	2 cut(s)	79, 605
BsnI	GGCC	6 cut(s)	179, 278, 455, 531, 674, 857
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	2 cut(s)	291, 768
Bsp19I	CCATGG	1 cut(s)	508
BspANI	GGCC	6 cut(s)	179, 278, 455, 531, 674, 857
BspCNI	CTCAG	3 cut(s)	88, 338, 532
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	7 cut(s)	34, 99, 234, 427, 493, 553, 633
BspPI	GGATC	1 cut(s)	776
BspT107I	GGYRCC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	3 cut(s)	306, 700, 763
BssECI	CCNNGG	5 cut(s)	421, 508, 519, 532, 852
BssMI	GATC	2 cut(s)	291, 768
BssT1I	CCWWGG	4 cut(s)	421, 508, 519, 532
Bst2UI	CCWGG	2 cut(s)	712, 853
Bst4CI	ACNGT	3 cut(s)	214, 311, 574
Bst6I	CTCTTC	2 cut(s)	9, 642
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	2 cut(s)	413, 750
BstDEI	CTNAG	4 cut(s)	75, 325, 540, 594
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	3 cut(s)	25, 678, 763
BstKTI	GATC	2 cut(s)	294, 771
BstMAI	GTCTC	2 cut(s)	603, 722
BstMBI	GATC	2 cut(s)	291, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
BstNI	CCWGG	2 cut(s)	712, 853
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	710, 851
BstSFI	CTRYAG	1 cut(s)	151
BstV1I	GCAGC	3 cut(s)	712, 784, 793
BstV2I	GAAGAC	2 cut(s)	470, 568
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuRI	GGCC	6 cut(s)	179, 278, 455, 531, 674, 857
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	25, 678, 763
BtsIMutI	CAGTG	4 cut(s)	208, 299, 570, 770
Cac8I	GCNNGC	2 cut(s)	413, 750
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	4 cut(s)	97, 276, 782, 855
Csp6I	GTAC	3 cut(s)	246, 312, 814
CviAII	CATG	5 cut(s)	128, 141, 412, 509, 617
CviQI	GTAC	3 cut(s)	246, 312, 814
DdeI	CTNAG	4 cut(s)	75, 325, 540, 594
DpnI	GATC	2 cut(s)	293, 770
DpnII	GATC	2 cut(s)	291, 768
DrdI	GACNNNNNNGTC	1 cut(s)	617
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	2 cut(s)	177, 672
Eam1104I	CTCTTC	2 cut(s)	9, 642
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	2 cut(s)	9, 642
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	4 cut(s)	421, 508, 519, 532
Eco147I	AGGCCT	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	97, 782
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	2 cut(s)	97, 855
EcoRII	CCWGG	2 cut(s)	710, 851
EcoT14I	CCWWGG	4 cut(s)	421, 508, 519, 532
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	4 cut(s)	421, 508, 519, 532
FaeI	CATG	5 cut(s)	131, 144, 415, 512, 620
FaqI	GGGAC	2 cut(s)	79, 605
FatI	CATG	5 cut(s)	127, 140, 411, 508, 616
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	726, 798, 807
FokI	GGATG	3 cut(s)	32, 665, 770
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	726, 798, 807
FspBI	CTAG	2 cut(s)	368, 606
GluI	GCNGC	3 cut(s)	726, 798, 807
GsaI	CCCAGC	2 cut(s)	162, 347
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	6 cut(s)	179, 278, 455, 531, 674, 857
Hin1II	CATG	5 cut(s)	131, 144, 415, 512, 620
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	611, 715
HphI	GGTGA	2 cut(s)	379, 536
Hpy166II	GTNNAC	7 cut(s)	210, 246, 307, 332, 505, 568, 667
Hpy188I	TCNGA	3 cut(s)	78, 722, 833
Hpy188III	TCNNGA	2 cut(s)	128, 460
Hpy8I	GTNNAC	7 cut(s)	210, 246, 307, 332, 505, 568, 667
HpyAV	CCTTC	2 cut(s)	445, 466
HpyCH4III	ACNGT	3 cut(s)	214, 311, 574
HpyCH4V	TGCA	3 cut(s)	299, 415, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
HpyF3I	CTNAG	4 cut(s)	75, 325, 540, 594
Hsp92II	CATG	5 cut(s)	131, 144, 415, 512, 620
Kzo9I	GATC	2 cut(s)	291, 768
LmnI	GCTCC	7 cut(s)	32, 115, 425, 491, 637, 722, 745
Lsp1109I	GCAGC	3 cut(s)	712, 784, 793
LweI	GCATC	2 cut(s)	580, 708
MaeI	CTAG	2 cut(s)	368, 606
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	293, 770
MboI	GATC	2 cut(s)	291, 768
MboII	GAAGA	5 cut(s)	26, 475, 568, 629, 763
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	2 cut(s)	179, 674
MluCI	AATT	2 cut(s)	267, 642
MluNI	TGGCCA	2 cut(s)	179, 674
MlyI	GAGTC	2 cut(s)	605, 724
MmeI	TCCRAC	2 cut(s)	10, 760
MnlI	CCTC	7 cut(s)	10, 135, 203, 259, 395, 591, 645
Mox20I	TGGCCA	2 cut(s)	179, 674
MroXI	GAANNNNTTC	1 cut(s)	455
MscI	TGGCCA	2 cut(s)	179, 674
MseI	TTAA	2 cut(s)	24, 339
MslI	CAYNNNNRTG	3 cut(s)	203, 410, 557
Msp20I	TGGCCA	2 cut(s)	179, 674
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	712, 853
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	2 cut(s)	712, 853
MwoI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	291, 768
NlaIII	CATG	5 cut(s)	131, 144, 415, 512, 620
NlaIV	GGNNCC	7 cut(s)	34, 99, 234, 427, 493, 553, 633
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	415
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	415
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	3 cut(s)	727, 799, 808
PleI	GAGTC	2 cut(s)	605, 723
PpsI	GAGTC	2 cut(s)	605, 723
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	710, 851
PspFI	CCCAGC	2 cut(s)	158, 343
PspGI	CCWGG	2 cut(s)	710, 851
PspN4I	GGNNCC	7 cut(s)	34, 99, 234, 427, 493, 553, 633
PspPI	GGNCC	4 cut(s)	97, 276, 782, 855
PspPPI	RGGWCCY	1 cut(s)	97
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	3 cut(s)	247, 313, 815
RsaNI	GTAC	3 cut(s)	246, 312, 814
RseI	CAYNNNNRTG	3 cut(s)	203, 410, 557
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	24, 339
SatI	GCNGC	3 cut(s)	726, 798, 807
Sau3AI	GATC	2 cut(s)	291, 768
Sau96I	GGNCC	4 cut(s)	97, 276, 782, 855
SchI	GAGTC	2 cut(s)	605, 724
ScrFI	CCNGG	2 cut(s)	712, 853
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	2 cut(s)	580, 708
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	97, 782
SmiMI	CAYNNNNRTG	3 cut(s)	203, 410, 557
SphI	GCATGC	1 cut(s)	415
Sse9I	AATT	2 cut(s)	267, 642
SseBI	AGGCCT	1 cut(s)	455
SspMI	CTAG	2 cut(s)	368, 606
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	710, 851
StyI	CCWWGG	4 cut(s)	421, 508, 519, 532
TaaI	ACNGT	3 cut(s)	214, 311, 574
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	267, 642
TatI	WGTACW	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	24, 339
Tru9I	TTAA	2 cut(s)	24, 339
TscAI	CASTG	4 cut(s)	208, 306, 577, 770
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	725, 797, 806
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	778
TspRI	CASTG	4 cut(s)	208, 306, 577, 770
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	97, 782
XceI	RCATGY	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	2 cut(s)	368, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.