MD01G1148400.v1.1

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Reverse (-)
25722874 .. 25724678
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1148400.v1.1.491

Sequence Viewer

Length: 870 bp
ATGGAGGGCAAGGAAGAGGATGTTAGGCTGGGAGCGAACAAGTACTCAGAGAGGCAGCCGATCGGGACGTCGGCTCAGAGCCAGGACGACGGGAAGGACTACAAGGAACCACCGCCTGCTCCACTGTTCGAGCCCGGCGAGCTGACGTCATGGTCGTTCTACAGGGCCGGGATCGCCGAGTTCATCGCCACTTTCCTGTTCCTCTACATCACAATCTTGACGGTGATGGGCGTTGTCAAGTCGAAGTCGAAGTGCACGACGGTCGGGATTCAAGGAATCGCTTGGGCTTTTGGCGGGACCATCTTCGCCCTCGTCTACAGCACCGCCGGCATCTCCGGTGGTCACATAAACCCGGCGGTGACTTTCGGGCTGTTTTTGGCCAGGAAGCTGTCGCTGACCAGGGCGGTGTTCTACATAGTTATGCAGACCCTCGGAGCTATCGCCGGTGCCGCCGTCGTGAAGGGCTTCGAGAAGAGCTCCACCTTCGAGATGCTGGGCGGTGGTGCCAACTCTGTTGCCCATGGTTACACCAAGGGTCAAGGACTTGGTGCTGAGATCATCGGCACCTTTGTCCTCGTCTACACCGTTTTCTCCGCCACTGACGCTAAGCGTAGCGCCAGAGACTCCCACGTTCCGATTTTGGCTCCGTTGCCAATTGGGTTCGCCGTGTTCTTGGTGCACTTGGCCACCATCCCCGTCACCGGAACTGGCATCAACCCAGCAAGAAGTCTTGGCGCTGCCATCATCTACAACAAGAAGCATGCCTGGGATGACCACTGGATATTCTGGGTTGGACCGTTCATTGGGGCAGCACTTGCAGCTTTGTACCACGTGGTTGTGATCAGGGCCATCCCTTTCAAGTCCAAGTGA

Protein Analysis

290

Amino Acids

30.85

Weight (kDa)

9.3

Isoelectric Point (pI)

30.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 47 - 277 6.9e-82 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 151
AatII GACGTC 2 cut(s) 71, 149
AccB1I GGYRCC 3 cut(s) 446, 503, 563
AccI GTMKAC 2 cut(s) 315, 579
AciI CCGC 8 cut(s) 113, 294, 324, 356, 404, 450, 498, 594
AclWI GGATC 1 cut(s) 179
AcoI YGGCCR 2 cut(s) 378, 684
AcvI CACGTG 1 cut(s) 832
AcyI GRCGYC 2 cut(s) 68, 146
AfaI GTAC 2 cut(s) 44, 827
AfiI CCNNNNNNNGG 2 cut(s) 701, 803
AgsI TTSAA 2 cut(s) 272, 859
AjnI CCWGG 4 cut(s) 81, 380, 398, 764
AluBI AGCT 5 cut(s) 142, 388, 437, 477, 821
AluI AGCT 5 cut(s) 142, 388, 437, 477, 821
Alw21I GWGCWC 3 cut(s) 257, 479, 681
Alw26I GTCTC 1 cut(s) 615
Alw44I GTGCAC 2 cut(s) 253, 677
AlwI GGATC 1 cut(s) 179
AoxI GGCC 4 cut(s) 165, 378, 684, 846
ApaLI GTGCAC 2 cut(s) 253, 677
ApeKI GCWGC 4 cut(s) 55, 737, 809, 818
Asp700I GAANNNNTTC 1 cut(s) 464
AspLEI GCGC 2 cut(s) 617, 737
AspS9I GGNCC 4 cut(s) 165, 297, 794, 846
AsuC2I CCSGG 3 cut(s) 135, 169, 353
AsuHPI GGTGA 3 cut(s) 235, 370, 691
AvaII GGWCC 2 cut(s) 297, 794
BaeGI GKGCMC 2 cut(s) 257, 681
BalI TGGCCA 2 cut(s) 380, 686
BanI GGYRCC 3 cut(s) 446, 503, 563
BanII GRGCYC 2 cut(s) 135, 479
BbrPI CACGTG 1 cut(s) 832
Bbv12I GWGCWC 3 cut(s) 257, 479, 681
BbvI GCAGC 4 cut(s) 67, 724, 821, 830
BccI CCATC 5 cut(s) 220, 308, 698, 749, 857
BceAI ACGGC 2 cut(s) 437, 650
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 4 cut(s) 83, 382, 400, 766
BclI TGATCA 1 cut(s) 840
BcnI CCSGG 3 cut(s) 135, 169, 353
BcoDI GTCTC 1 cut(s) 615
BfmI CTRYAG 2 cut(s) 160, 316
BfoI RGCGCY 2 cut(s) 618, 738
BisI GCNGC 5 cut(s) 56, 450, 738, 810, 819
BlpI GCTNAGC 1 cut(s) 606
BlsI GCNGC 5 cut(s) 57, 451, 739, 811, 820
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 7 cut(s) 83, 135, 169, 353, 382, 400, 766
Bme18I GGWCC 2 cut(s) 297, 794
BmgT120I GGNCC 4 cut(s) 165, 297, 794, 846
BmiI GGNNCC 6 cut(s) 108, 298, 448, 505, 565, 645
BmrFI CCNGG 7 cut(s) 83, 135, 169, 353, 382, 400, 766
BmsI GCATC 3 cut(s) 339, 480, 720
BplI GAGNNNNNCTC 2 cut(s) 461, 493
Bpu1102I GCTNAGC 1 cut(s) 606
BpuMI CCSGG 3 cut(s) 135, 169, 353
BsaAI YACGTR 1 cut(s) 832
BsaHI GRCGYC 2 cut(s) 68, 146
BsaJI CCNNGG 5 cut(s) 399, 430, 520, 531, 765
BsaWI WCCGGW 2 cut(s) 335, 701
Bsc4I CCNNNNNNNGG 2 cut(s) 701, 803
Bse118I RCCGGY 2 cut(s) 326, 443
Bse1I ACTGG 2 cut(s) 712, 782
BseBI CCWGG 4 cut(s) 83, 382, 400, 766
BseDI CCNNGG 5 cut(s) 399, 430, 520, 531, 765
BseGI GGATG 4 cut(s) 25, 690, 775, 849
BseLI CCNNNNNNNGG 2 cut(s) 701, 803
BseMII CTCAG 3 cut(s) 60, 89, 543
BseNI ACTGG 2 cut(s) 712, 782
BseSI GKGCMC 2 cut(s) 257, 681
BseXI GCAGC 4 cut(s) 67, 724, 821, 830
BseYI CCCAGC 3 cut(s) 28, 493, 718
Bsh1285I CGRYCG 2 cut(s) 63, 264
BshFI GGCC 4 cut(s) 167, 380, 686, 848
BshNI GGYRCC 3 cut(s) 446, 503, 563
BsiEI CGRYCG 2 cut(s) 63, 264
BsiHKAI GWGCWC 3 cut(s) 257, 479, 681
BsiSI CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 702
BslFI GGGAC 2 cut(s) 79, 310
BslI CCNNNNNNNGG 2 cut(s) 701, 803
BsmAI GTCTC 1 cut(s) 615
BsmFI GGGAC 2 cut(s) 79, 310
BsnI GGCC 4 cut(s) 167, 380, 686, 848
Bsp1286I GDGCHC 4 cut(s) 135, 257, 479, 681
Bsp143I GATC 4 cut(s) 60, 171, 555, 840
Bsp1720I GCTNAGC 1 cut(s) 606
Bsp19I CCATGG 1 cut(s) 520
BspACI CCGC 8 cut(s) 113, 294, 324, 356, 404, 450, 498, 594
BspANI GGCC 4 cut(s) 167, 380, 686, 848
BspCNI CTCAG 3 cut(s) 59, 88, 544
BspLI GGNNCC 6 cut(s) 108, 298, 448, 505, 565, 645
BspPI GGATC 1 cut(s) 179
BspQI GCTCTTC 1 cut(s) 467
BspT107I GGYRCC 3 cut(s) 446, 503, 563
BsrFI RCCGGY 2 cut(s) 326, 443
BsrI ACTGG 2 cut(s) 712, 782
BssAI RCCGGY 2 cut(s) 326, 443
BssECI CCNNGG 5 cut(s) 399, 430, 520, 531, 765
BssMI GATC 4 cut(s) 60, 171, 555, 840
BssNI GRCGYC 2 cut(s) 68, 146
BssT1I CCWWGG 2 cut(s) 520, 531
Bst2UI CCWGG 4 cut(s) 83, 382, 400, 766
Bst4CI ACNGT 5 cut(s) 126, 223, 262, 586, 798
Bst6I CTCTTC 2 cut(s) 9, 467
BstACI GRCGYC 2 cut(s) 68, 146
BstAPI GCANNNNNTGC 1 cut(s) 815
BstBAI YACGTR 1 cut(s) 832
BstC8I GCNNGC 4 cut(s) 117, 140, 328, 762
BstDEI CTNAG 4 cut(s) 46, 75, 552, 606
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 4 cut(s) 25, 690, 775, 849
BstH2I RGCGCY 2 cut(s) 618, 738
BstHHI GCGC 2 cut(s) 617, 737
BstKTI GATC 4 cut(s) 63, 174, 558, 843
BstMAI GTCTC 1 cut(s) 615
BstMBI GATC 4 cut(s) 60, 171, 555, 840
BstMCI CGRYCG 2 cut(s) 63, 264
BstMWI GCNNNNNNNGC 7 cut(s) 139, 173, 327, 449, 602, 815, 818
BstNI CCWGG 4 cut(s) 83, 382, 400, 766
BstNSI RCATGY 1 cut(s) 764
BstSCI CCNGG 7 cut(s) 81, 133, 167, 351, 380, 398, 764
BstSFI CTRYAG 2 cut(s) 160, 316
BstSLI GKGCMC 2 cut(s) 257, 681
BstV1I GCAGC 4 cut(s) 67, 724, 821, 830
BsuRI GGCC 4 cut(s) 167, 380, 686, 848
BtgI CCRYGG 1 cut(s) 520
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 4 cut(s) 25, 690, 775, 849
BtsIMutI CAGTG 3 cut(s) 122, 597, 775
Cac8I GCNNGC 4 cut(s) 117, 140, 328, 762
CfoI GCGC 2 cut(s) 617, 737
Cfr10I RCCGGY 2 cut(s) 326, 443
Cfr13I GGNCC 4 cut(s) 165, 297, 794, 846
CseI GACGC 1 cut(s) 611
Csp6I GTAC 2 cut(s) 43, 826
CviAII CATG 3 cut(s) 150, 521, 761
CviQI GTAC 2 cut(s) 43, 826
DdeI CTNAG 4 cut(s) 46, 75, 552, 606
DpnI GATC 4 cut(s) 62, 173, 557, 842
DpnII GATC 4 cut(s) 60, 171, 555, 840
DrdI GACNNNNNNGTC 1 cut(s) 151
DseDI GACNNNNNNGTC 1 cut(s) 151
EaeI YGGCCR 2 cut(s) 378, 684
Eam1104I CTCTTC 2 cut(s) 9, 467
EarI CTCTTC 2 cut(s) 9, 467
EciI GGCGGA 1 cut(s) 583
Ecl136II GAGCTC 1 cut(s) 477
Eco130I CCWWGG 2 cut(s) 520, 531
Eco24I GRGCYC 2 cut(s) 135, 479
Eco47I GGWCC 2 cut(s) 297, 794
Eco53kI GAGCTC 1 cut(s) 477
Eco72I CACGTG 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 477
EcoRII CCWGG 4 cut(s) 81, 380, 398, 764
EcoT14I CCWWGG 2 cut(s) 520, 531
EcoT38I GRGCYC 2 cut(s) 135, 479
ErhI CCWWGG 2 cut(s) 520, 531
FaeI CATG 3 cut(s) 153, 524, 764
FaiI YATR 6 cut(s) 151, 347, 416, 422, 522, 762
FaqI GGGAC 2 cut(s) 79, 310
FatI CATG 3 cut(s) 149, 520, 760
FauI CCCGC 1 cut(s) 287
FbaI TGATCA 1 cut(s) 840
FblI GTMKAC 2 cut(s) 315, 579
Fnu4HI GCNGC 5 cut(s) 56, 450, 738, 810, 819
FokI GGATG 4 cut(s) 32, 677, 782, 836
FriOI GRGCYC 2 cut(s) 135, 479
Fsp4HI GCNGC 5 cut(s) 56, 450, 738, 810, 819
GlaI GCGC 2 cut(s) 616, 736
GluI GCNGC 5 cut(s) 56, 450, 738, 810, 819
GsaI CCCAGC 3 cut(s) 32, 497, 722
HaeII RGCGCY 2 cut(s) 618, 738
HaeIII GGCC 4 cut(s) 167, 380, 686, 848
HapII CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 702
HgaI GACGC 1 cut(s) 611
HhaI GCGC 2 cut(s) 617, 737
Hin1I GRCGYC 2 cut(s) 68, 146
Hin1II CATG 3 cut(s) 153, 524, 764
Hin6I GCGC 2 cut(s) 615, 735
HinP1I GCGC 2 cut(s) 615, 735
HinfI GANTC 3 cut(s) 268, 276, 623
HpaII CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 702
HphI GGTGA 3 cut(s) 235, 370, 691
Hpy166II GTNNAC 4 cut(s) 255, 316, 580, 679
Hpy188I TCNGA 4 cut(s) 49, 78, 434, 636
Hpy188III TCNNGA 6 cut(s) 64, 217, 265, 457, 469, 487
Hpy8I GTNNAC 4 cut(s) 255, 316, 580, 679
Hpy99I CGWCG 4 cut(s) 73, 92, 262, 458
HpyAV CCTTC 3 cut(s) 88, 454, 493
HpyCH4III ACNGT 5 cut(s) 126, 223, 262, 586, 798
HpyCH4IV ACGT 4 cut(s) 68, 146, 630, 831
HpyCH4V TGCA 4 cut(s) 255, 424, 679, 818
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 173, 327, 449, 602, 815, 818
HpyF3I CTNAG 4 cut(s) 46, 75, 552, 606
HpySE526I ACGT 4 cut(s) 68, 146, 630, 831
Hsp92I GRCGYC 2 cut(s) 68, 146
Hsp92II CATG 3 cut(s) 153, 524, 764
HspAI GCGC 2 cut(s) 615, 735
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 840
Kzo9I GATC 4 cut(s) 60, 171, 555, 840
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 5 cut(s) 32, 124, 434, 482, 649
Lsp1109I GCAGC 4 cut(s) 67, 724, 821, 830
LweI GCATC 3 cut(s) 339, 480, 720
MaeII ACGT 4 cut(s) 68, 146, 630, 831
MaeIII GTNAC 4 cut(s) 341, 358, 524, 697
MalI GATC 4 cut(s) 62, 173, 557, 842
MboI GATC 4 cut(s) 60, 171, 555, 840
MboII GAAGA 3 cut(s) 26, 295, 484
MfeI CAATTG 1 cut(s) 654
MhlI GDGCHC 4 cut(s) 135, 257, 479, 681
MlsI TGGCCA 2 cut(s) 380, 686
MluCI AATT 1 cut(s) 654
MluNI TGGCCA 2 cut(s) 380, 686
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 6 cut(s) 10, 45, 212, 320, 440, 584
Mox20I TGGCCA 2 cut(s) 380, 686
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 464
MscI TGGCCA 2 cut(s) 380, 686
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 2 cut(s) 380, 686
MspI CCGG 7 cut(s) 135, 168, 327, 336, 353, 444, 702
MspR9I CCNGG 7 cut(s) 83, 135, 169, 353, 382, 400, 766
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 4 cut(s) 83, 382, 400, 766
MwoI GCNNNNNNNGC 7 cut(s) 139, 173, 327, 449, 602, 815, 818
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 3 cut(s) 135, 169, 353
NcoI CCATGG 1 cut(s) 520
NdeII GATC 4 cut(s) 60, 171, 555, 840
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 3 cut(s) 153, 524, 764
NlaIV GGNNCC 6 cut(s) 108, 298, 448, 505, 565, 645
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 3 cut(s) 341, 358, 697
NspI RCATGY 1 cut(s) 764
PaeI GCATGC 1 cut(s) 764
PciSI GCTCTTC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 4 cut(s) 135, 152, 254, 582
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 464
PfeI GAWTC 2 cut(s) 268, 276
PkrI GCNGC 5 cut(s) 57, 451, 739, 811, 820
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 1 cut(s) 617
PmaCI CACGTG 1 cut(s) 832
PmlI CACGTG 1 cut(s) 832
PpsI GAGTC 1 cut(s) 617
Ppu21I YACGTR 1 cut(s) 832
Psp124BI GAGCTC 1 cut(s) 479
Psp6I CCWGG 4 cut(s) 81, 380, 398, 764
PspCI CACGTG 1 cut(s) 832
PspFI CCCAGC 3 cut(s) 28, 493, 718
PspGI CCWGG 4 cut(s) 81, 380, 398, 764
PspN4I GGNNCC 6 cut(s) 108, 298, 448, 505, 565, 645
PspPI GGNCC 4 cut(s) 165, 297, 794, 846
PvuI CGATCG 1 cut(s) 63
RsaI GTAC 2 cut(s) 44, 827
RsaNI GTAC 2 cut(s) 43, 826
RseI CAYNNNNRTG 1 cut(s) 419
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 467
SatI GCNGC 5 cut(s) 56, 450, 738, 810, 819
Sau3AI GATC 4 cut(s) 60, 171, 555, 840
Sau96I GGNCC 4 cut(s) 165, 297, 794, 846
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 7 cut(s) 83, 135, 169, 353, 382, 400, 766
SduI GDGCHC 4 cut(s) 135, 257, 479, 681
SfaNI GCATC 3 cut(s) 339, 480, 720
SfcI CTRYAG 2 cut(s) 160, 316
SgrAI CRCCGGYG 1 cut(s) 443
SinI GGWCC 2 cut(s) 297, 794
SmiMI CAYNNNNRTG 1 cut(s) 419
SphI GCATGC 1 cut(s) 764
Sse9I AATT 1 cut(s) 654
SsiI CCGC 8 cut(s) 113, 294, 324, 356, 404, 450, 498, 594
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 7 cut(s) 81, 133, 167, 351, 380, 398, 764
StyI CCWWGG 2 cut(s) 520, 531
TaaI ACNGT 5 cut(s) 126, 223, 262, 586, 798
TaiI ACGT 4 cut(s) 71, 149, 633, 834
TaqI TCGA 5 cut(s) 129, 242, 248, 468, 486
TasI AATT 1 cut(s) 654
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 2 cut(s) 268, 276
TscAI CASTG 3 cut(s) 129, 604, 782
TseFI GTSAC 3 cut(s) 341, 358, 697
TseI GCWGC 4 cut(s) 55, 737, 809, 818
Tsp45I GTSAC 3 cut(s) 341, 358, 697
TspDTI ATGAA 2 cut(s) 172, 790
TspGWI ACGGA 1 cut(s) 636
TspRI CASTG 3 cut(s) 129, 604, 782
VneI GTGCAC 2 cut(s) 253, 677
VpaK11BI GGWCC 2 cut(s) 297, 794
XceI RCATGY 1 cut(s) 764
XmiI GTMKAC 2 cut(s) 315, 579
XmnI GAANNNNTTC 1 cut(s) 464
ZraI GACGTC 2 cut(s) 69, 147
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.