Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

21837236 .. 21839928

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G171200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTTTTCATAATTTCTTTAACATACTTTAACAGCTCACACTCCTCTCACTCCAAAAACCAAAGCTTTCAACTTTGTAGGGAGGGCAGGCCAAAACCAGAGTTCTTGAGAGAGAGAGAGAACAGAGAAATGGAAGGGAAAGAAGAAGATGTGAGGCTGGGAGCCAACAAATTCTCAGAGAGGCAGCCCATAGGGACATCTGCACAGACAGACAAGGACTACAAGGAGCCACCACCAGCACCTCTGTTTGAGCCTGGTGAGCTCAAGTCCTGGTCTTTTTGGAGGGCTGGAATTGCTGAGTTCATAGCCACCTTCTTGTTCCTCTACATCACTGTCTTGACTGTCATGGGTGTTTCTAGATCTCGCAGCAAGTGTTCTACTGTGGGTATTCAGGGCATTGCTTGGGCCTTTGGTGGTAGCATCTTTGCCCTTGTTTACTCCACTGCTGGTATCTCAGGTGGTCACATAAACCCAGCCGTGACATTTGGTCTCTTCCTAGCAAGGAAGCTCTCCCTGACCAGAGCTGTATTCTATATAGTCATGCAAACCCTAGGGGCAATTGCTGGTGCTGGGGTGGTGAAGGGGTTCCAAAAGAACCAGTATGAGTTGCTGGGAGGTGGAGCTAATGTGGTGAACCATGGCTATACCAAGGGTGACGGCCTTGGTGCTGAGATTGTTGGCACTTTCGTTCTTGTGTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAATGCTAGAGACTCTCATGTCCCTATCTTGGCTCCACTTCCCATCGGGTTTGCAGTGTTCTTGGTGCACTTGGCAACCATCCCCATCACTGGAACCGGCATCAACCCCGCTAGGAGCCTTGGGGCTGCCATCATCTACAACAAGGACCGTGCATGGGATGATCATTGGATCTTCTGGGTGGGACCATTCATCGGAGCTGCACTTGCCGCCCTCTACCATCAGATAATCATCAGAGCCATCCCATTCAAGACCAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

330

Amino Acids

36.02

Weight (kDa)

9.45

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	746
AciI	CCGC	2 cut(s)	837, 936
AclWI	GGATC	1 cut(s)	905
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	1 cut(s)	698
AfiI	CCNNNNNNNGG	4 cut(s)	757, 818, 883, 920
AgsI	TTSAA	2 cut(s)	71, 976
AhdI	GACNNNNNGTC	1 cut(s)	486
AjnI	CCWGG	3 cut(s)	253, 269, 980
AluBI	AGCT	7 cut(s)	36, 66, 262, 508, 524, 623, 926
AluI	AGCT	7 cut(s)	36, 66, 262, 508, 524, 623, 926
Alw21I	GWGCWC	2 cut(s)	264, 798
Alw26I	GTCTC	2 cut(s)	494, 732
Alw44I	GTGCAC	1 cut(s)	794
AlwI	GGATC	1 cut(s)	905
AoxI	GGCC	3 cut(s)	89, 405, 658
ApaLI	GTGCAC	1 cut(s)	794
ApeKI	GCWGC	4 cut(s)	184, 366, 854, 926
ApoI	RAATTY	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	550
AspS9I	GGNCC	3 cut(s)	405, 874, 911
AsuHPI	GGTGA	4 cut(s)	269, 589, 643, 665
AvaII	GGWCC	2 cut(s)	874, 911
AvrII	CCTAGG	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	798
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	2 cut(s)	264, 798
BbvI	GCAGC	4 cut(s)	196, 378, 841, 913
BccI	CCATC	6 cut(s)	779, 815, 821, 866, 954, 974
BceAI	ACGGC	2 cut(s)	461, 673
BciT130I	CCWGG	3 cut(s)	255, 271, 982
BclI	TGATCA	1 cut(s)	889
BcoDI	GTCTC	2 cut(s)	494, 732
BfaI	CTAG	5 cut(s)	357, 497, 551, 735, 840
BglII	AGATCT	1 cut(s)	359
BisI	GCNGC	5 cut(s)	185, 367, 855, 927, 936
BlnI	CCTAGG	1 cut(s)	550
BlsI	GCNGC	5 cut(s)	186, 368, 856, 928, 937
Bme1390I	CCNGG	3 cut(s)	255, 271, 982
Bme18I	GGWCC	2 cut(s)	874, 911
BmeRI	GACNNNNNGTC	1 cut(s)	486
BmgT120I	GGNCC	3 cut(s)	405, 874, 911
BmiI	GGNNCC	7 cut(s)	163, 228, 587, 762, 823, 845, 912
BmrFI	CCNGG	3 cut(s)	255, 271, 982
BmsI	GCATC	3 cut(s)	429, 709, 837
BpuEI	CTTGAG	2 cut(s)	127, 248
BsaBI	GATNNNNATC	1 cut(s)	956
BsaI	GGTCTC	1 cut(s)	494
BsaJI	CCNNGG	6 cut(s)	550, 637, 648, 661, 847, 981
BsaXI	ACNNNNNCTCC	2 cut(s)	612, 642
Bsc4I	CCNNNNNNNGG	4 cut(s)	757, 818, 883, 920
Bse118I	RCCGGY	1 cut(s)	824
Bse1I	ACTGG	2 cut(s)	598, 823
Bse3DI	GCAATG	1 cut(s)	396
Bse8I	GATNNNNATC	1 cut(s)	956
BseBI	CCWGG	3 cut(s)	255, 271, 982
BseDI	CCNNGG	6 cut(s)	550, 637, 648, 661, 847, 981
BseGI	GGATG	3 cut(s)	807, 892, 966
BseJI	GATNNNNATC	1 cut(s)	956
BseLI	CCNNNNNNNGG	4 cut(s)	757, 818, 883, 920
BseMI	GCAATG	1 cut(s)	396
BseMII	CTCAG	4 cut(s)	189, 288, 468, 660
BseNI	ACTGG	2 cut(s)	598, 823
BseRI	GAGGAG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	4 cut(s)	196, 378, 841, 913
BseYI	CCCAGC	4 cut(s)	157, 472, 569, 610
BsgI	GTGCAG	2 cut(s)	186, 912
BshFI	GGCC	3 cut(s)	91, 407, 660
BsiHKAI	GWGCWC	2 cut(s)	264, 798
BsiSI	CCGG	1 cut(s)	825
BslFI	GGGAC	3 cut(s)	208, 734, 924
BslI	CCNNNNNNNGG	4 cut(s)	757, 818, 883, 920
BsmAI	GTCTC	2 cut(s)	494, 732
BsmFI	GGGAC	3 cut(s)	208, 734, 924
BsnI	GGCC	3 cut(s)	91, 407, 660
Bso31I	GGTCTC	1 cut(s)	494
Bsp1286I	GDGCHC	2 cut(s)	264, 798
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	3 cut(s)	359, 889, 897
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	2 cut(s)	837, 936
BspANI	GGCC	3 cut(s)	91, 407, 660
BspCNI	CTCAG	4 cut(s)	188, 289, 467, 661
BspLI	GGNNCC	7 cut(s)	163, 228, 587, 762, 823, 845, 912
BspPI	GGATC	1 cut(s)	905
BspTNI	GGTCTC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	396
BsrFI	RCCGGY	1 cut(s)	824
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	2 cut(s)	598, 823
BssAI	RCCGGY	1 cut(s)	824
BssECI	CCNNGG	6 cut(s)	550, 637, 648, 661, 847, 981
BssMI	GATC	3 cut(s)	359, 889, 897
BssT1I	CCWWGG	5 cut(s)	550, 637, 648, 661, 847
Bst2UI	CCWGG	3 cut(s)	255, 271, 982
Bst4CI	ACNGT	5 cut(s)	334, 343, 382, 703, 878
Bst6I	CTCTTC	1 cut(s)	497
BstAUI	TGTACA	1 cut(s)	696
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	4 cut(s)	175, 297, 454, 669
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	3 cut(s)	807, 892, 966
BstKTI	GATC	3 cut(s)	362, 892, 900
BstMAI	GTCTC	2 cut(s)	494, 732
BstMBI	GATC	3 cut(s)	359, 889, 897
BstMWI	GCNNNNNNNGC	5 cut(s)	259, 293, 719, 932, 935
BstNI	CCWGG	3 cut(s)	255, 271, 982
BstSCI	CCNGG	3 cut(s)	253, 269, 980
BstSLI	GKGCMC	1 cut(s)	798
BstV1I	GCAGC	4 cut(s)	196, 378, 841, 913
BstX2I	RGATCY	2 cut(s)	359, 897
BstYI	RGATCY	2 cut(s)	359, 897
BsuRI	GGCC	3 cut(s)	91, 407, 660
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	807, 892, 966
BtsI	GCAGTG	2 cut(s)	441, 789
BtsIMutI	CAGTG	6 cut(s)	330, 441, 699, 714, 789, 816
Cac8I	GCNNGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	824
Cfr13I	GGNCC	3 cut(s)	405, 874, 911
Csp6I	GTAC	1 cut(s)	697
CviAII	CATG	5 cut(s)	346, 541, 638, 746, 882
CviQI	GTAC	1 cut(s)	697
DdeI	CTNAG	4 cut(s)	175, 297, 454, 669
DpnI	GATC	3 cut(s)	361, 891, 899
DpnII	GATC	3 cut(s)	359, 889, 897
DrdI	GACNNNNNNGTC	1 cut(s)	746
DriI	GACNNNNNGTC	1 cut(s)	486
DseDI	GACNNNNNNGTC	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	497
Eam1105I	GACNNNNNGTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	497
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	5 cut(s)	550, 637, 648, 661, 847
Eco24I	GRGCYC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	494
Eco47I	GGWCC	2 cut(s)	874, 911
Eco53kI	GAGCTC	1 cut(s)	262
EcoICRI	GAGCTC	1 cut(s)	262
EcoRII	CCWGG	3 cut(s)	253, 269, 980
EcoT14I	CCWWGG	5 cut(s)	550, 637, 648, 661, 847
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	5 cut(s)	550, 637, 648, 661, 847
FaeI	CATG	5 cut(s)	349, 544, 641, 749, 885
FaqI	GGGAC	3 cut(s)	208, 734, 924
FatI	CATG	5 cut(s)	345, 540, 637, 745, 881
FauI	CCCGC	1 cut(s)	844
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	5 cut(s)	185, 367, 855, 927, 936
FokI	GGATG	3 cut(s)	794, 899, 953
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	5 cut(s)	185, 367, 855, 927, 936
FspBI	CTAG	5 cut(s)	357, 497, 551, 735, 840
GluI	GCNGC	5 cut(s)	185, 367, 855, 927, 936
GsaI	CCCAGC	4 cut(s)	161, 476, 573, 614
HaeIII	GGCC	3 cut(s)	91, 407, 660
HapII	CCGG	1 cut(s)	825
Hin1II	CATG	5 cut(s)	349, 544, 641, 749, 885
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	1 cut(s)	740
HpaII	CCGG	1 cut(s)	825
HphI	GGTGA	4 cut(s)	269, 589, 643, 665
Hpy166II	GTNNAC	5 cut(s)	436, 634, 697, 699, 796
Hpy188I	TCNGA	4 cut(s)	178, 923, 951, 962
Hpy188III	TCNNGA	4 cut(s)	106, 337, 357, 976
Hpy8I	GTNNAC	5 cut(s)	436, 634, 697, 699, 796
HpyAV	CCTTC	3 cut(s)	128, 322, 574
HpyCH4III	ACNGT	5 cut(s)	334, 343, 382, 703, 878
HpyCH4V	TGCA	6 cut(s)	203, 544, 782, 796, 881, 929
HpyF10VI	GCNNNNNNNGC	5 cut(s)	259, 293, 719, 932, 935
HpyF3I	CTNAG	4 cut(s)	175, 297, 454, 669
Hsp92II	CATG	5 cut(s)	349, 544, 641, 749, 885
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	3 cut(s)	359, 889, 897
LmnI	GCTCC	6 cut(s)	161, 226, 620, 766, 843, 923
Lsp1109I	GCAGC	4 cut(s)	196, 378, 841, 913
LweI	GCATC	3 cut(s)	429, 709, 837
MaeI	CTAG	5 cut(s)	357, 497, 551, 735, 840
MaeIII	GTNAC	3 cut(s)	461, 478, 653
MalI	GATC	3 cut(s)	361, 891, 899
MboI	GATC	3 cut(s)	359, 889, 897
MboII	GAAGA	4 cut(s)	155, 158, 484, 892
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	359, 897
MhlI	GDGCHC	2 cut(s)	264, 798
MluCI	AATT	4 cut(s)	12, 170, 291, 558
MlyI	GAGTC	1 cut(s)	734
MnlI	CCTC	9 cut(s)	55, 76, 147, 174, 252, 276, 332, 608, 950
MroXI	GAANNNNTTC	1 cut(s)	584
MseI	TTAA	2 cut(s)	20, 30
MspI	CCGG	1 cut(s)	825
MspR9I	CCNGG	3 cut(s)	255, 271, 982
MunI	CAATTG	1 cut(s)	558
MvaI	CCWGG	3 cut(s)	255, 271, 982
MwoI	GCNNNNNNNGC	5 cut(s)	259, 293, 719, 932, 935
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	3 cut(s)	359, 889, 897
NlaIII	CATG	5 cut(s)	349, 544, 641, 749, 885
NlaIV	GGNNCC	7 cut(s)	163, 228, 587, 762, 823, 845, 912
NmuCI	GTSAC	3 cut(s)	461, 478, 653
PdmI	GAANNNNTTC	1 cut(s)	584
PkrI	GCNGC	5 cut(s)	186, 368, 856, 928, 937
PleI	GAGTC	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	734
Psp124BI	GAGCTC	1 cut(s)	264
Psp6I	CCWGG	3 cut(s)	253, 269, 980
PspFI	CCCAGC	4 cut(s)	157, 472, 569, 610
PspGI	CCWGG	3 cut(s)	253, 269, 980
PspN4I	GGNNCC	7 cut(s)	163, 228, 587, 762, 823, 845, 912
PspPI	GGNCC	3 cut(s)	405, 874, 911
PsuI	RGATCY	2 cut(s)	359, 897
RsaI	GTAC	1 cut(s)	698
RsaNI	GTAC	1 cut(s)	697
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	2 cut(s)	20, 30
SatI	GCNGC	5 cut(s)	185, 367, 855, 927, 936
Sau3AI	GATC	3 cut(s)	359, 889, 897
Sau96I	GGNCC	3 cut(s)	405, 874, 911
SchI	GAGTC	1 cut(s)	734
ScrFI	CCNGG	3 cut(s)	255, 271, 982
SduI	GDGCHC	2 cut(s)	264, 798
SfaNI	GCATC	3 cut(s)	429, 709, 837
SinI	GGWCC	2 cut(s)	874, 911
SmlI	CTYRAG	2 cut(s)	106, 263
SmoI	CTYRAG	2 cut(s)	106, 263
Sse9I	AATT	4 cut(s)	12, 170, 291, 558
SsiI	CCGC	2 cut(s)	837, 936
SspMI	CTAG	5 cut(s)	357, 497, 551, 735, 840
SstI	GAGCTC	1 cut(s)	264
StyD4I	CCNGG	3 cut(s)	253, 269, 980
StyI	CCWWGG	5 cut(s)	550, 637, 648, 661, 847
TaaI	ACNGT	5 cut(s)	334, 343, 382, 703, 878
TasI	AATT	4 cut(s)	12, 170, 291, 558
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	938
Tru1I	TTAA	2 cut(s)	20, 30
Tru9I	TTAA	2 cut(s)	20, 30
TscAI	CASTG	6 cut(s)	337, 448, 706, 721, 789, 823
TseFI	GTSAC	3 cut(s)	461, 478, 653
TseI	GCWGC	4 cut(s)	184, 366, 854, 926
Tsp45I	GTSAC	3 cut(s)	461, 478, 653
TspDTI	ATGAA	2 cut(s)	292, 907
TspRI	CASTG	6 cut(s)	337, 448, 706, 721, 789, 823
VneI	GTGCAC	1 cut(s)	794
VpaK11BI	GGWCC	2 cut(s)	874, 911
XapI	RAATTY	1 cut(s)	170
XbaI	TCTAGA	1 cut(s)	356
XmaJI	CCTAGG	1 cut(s)	550
XmnI	GAANNNNTTC	1 cut(s)	584
XspI	CTAG	5 cut(s)	357, 497, 551, 735, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.