Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

225665 .. 227543

Gene Structure 1879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G01620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAAGGGAAAGAAGAGGATGTTCGAGTGGGAGCTAACAAGTTCCCGGAGAGGCAACCGATAGGTACATCGGCTCAGACGGACAAAGACTACAAGGAGCCACCACCAGCTCCATTTTTCGAGCCAGGCGAGCTGAGTTCGTGGTCCTTCTACAGAGCCGGAATCGCCGAGTTCATAGCCACCTTCCTGTTTCTATACATAACAGTATTGACAGTGATGGGAGTGAAGAGAGCACCAAACATGTGTGCCTCTGTTGGAATCCAAGGCATTGCTTGGGCTTTCGGTGGCATGATCTTTGCCCTTGTCTACTGTACTGCTGGAATCTCTGGTGGGCACATAAACCCAGCGGTGACATTTGGTCTGTTCTTGGCTCGTAAGCTGTCATTGACGAGAGCTGTCTTTTACATCGTGATGCAATGTCTCGGAGCCATCTGCGGCGCCGGAGTTGTCAAAGGCTTCCAGCCAAATCCTTACCAAACTCTCGGCGGAGGAGCCAACACAGTCGCTCACGGCTACACTAAGGGCTCTGGTTTGGGTGCTGAGATAATCGGAACCTTCGTCCTTGTCTACACGGTCTTCTCCGCCACTGACGCCAAGAGAAGCGCTCGTGACTCCCACGTTCCGATTTTGGCACCACTCCCAATCGGATTCGCTGTGTTCTTGGTTCACTTGGCGACGATTCCAATCACCGGAACAGGAATTAACCCAGCTAGGAGTCTTGGAGCTGCAATCATCTACAACAAGGACCACGCTTGGGACGACCACTGGATATTCTGGGTCGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTTACCACCAACTTGTCATCAGAGCCATTCCATTCAAGTCCAGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

286

Amino Acids

30.63

Weight (kDa)

9.02

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	11 - 201	8.4e-74	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	437, 631
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	2 cut(s)	306, 567
AciI	CCGC	5 cut(s)	347, 435, 486, 582, 806
AclWI	GGATC	1 cut(s)	849
AcyI	GRCGYC	2 cut(s)	438, 591
AfaI	GTAC	2 cut(s)	67, 313
AfeI	AGCGCT	1 cut(s)	604
AfiI	CCNNNNNNNGG	3 cut(s)	689, 754, 791
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	847
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	8 cut(s)	35, 110, 133, 379, 395, 710, 725, 800
AluI	AGCT	8 cut(s)	35, 110, 133, 379, 395, 710, 725, 800
Alw21I	GWGCWC	1 cut(s)	235
Alw26I	GTCTC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	849
AlwNI	CAGNNNCTG	1 cut(s)	858
Aor51HI	AGCGCT	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	725, 797
AspLEI	GCGC	2 cut(s)	440, 605
AspS9I	GGNCC	3 cut(s)	144, 745, 782
AsuC2I	CCSGG	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	361, 679
AvaII	GGWCC	3 cut(s)	144, 745, 782
BaeGI	GKGCMC	1 cut(s)	336
BanI	GGYRCC	2 cut(s)	437, 631
BanII	GRGCYC	1 cut(s)	527
BauI	CACGAG	1 cut(s)	606
BbsI	GAAGAC	1 cut(s)	568
Bbv12I	GWGCWC	1 cut(s)	235
BbvI	GCAGC	2 cut(s)	712, 809
BccI	CCATC	2 cut(s)	211, 437
BceAI	ACGGC	1 cut(s)	526
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	47
BcoDI	GTCTC	1 cut(s)	425
BfaI	CTAG	1 cut(s)	711
BfmI	CTRYAG	1 cut(s)	151
BfoI	RGCGCY	2 cut(s)	441, 606
BisI	GCNGC	4 cut(s)	436, 726, 798, 807
BlsI	GCNGC	4 cut(s)	437, 727, 799, 808
Bme1390I	CCNGG	2 cut(s)	47, 126
Bme18I	GGWCC	3 cut(s)	144, 745, 782
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	144, 745, 782
BmiI	GGNNCC	6 cut(s)	99, 427, 439, 493, 553, 633
BmrFI	CCNGG	2 cut(s)	47, 126
BmsI	GCATC	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	568
BplI	GAGNNNNNCTC	2 cut(s)	589, 621
BpuMI	CCSGG	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	683
BsaHI	GRCGYC	2 cut(s)	438, 591
BsaJI	CCNNGG	1 cut(s)	262
BsaWI	WCCGGW	1 cut(s)	689
Bsc4I	CCNNNNNNNGG	3 cut(s)	689, 754, 791
Bse1I	ACTGG	1 cut(s)	770
Bse3DI	GCAATG	2 cut(s)	267, 422
Bse8I	GATNNNNATC	1 cut(s)	683
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	1 cut(s)	262
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	683
BseLI	CCNNNNNNNGG	3 cut(s)	689, 754, 791
BseMI	GCAATG	2 cut(s)	267, 422
BseMII	CTCAG	3 cut(s)	89, 125, 531
BseNI	ACTGG	1 cut(s)	770
BseRI	GAGGAG	1 cut(s)	504
BseSI	GKGCMC	1 cut(s)	336
BseXI	GCAGC	2 cut(s)	712, 809
BseYI	CCCAGC	2 cut(s)	343, 706
BshNI	GGYRCC	2 cut(s)	437, 631
BsiHKAI	GWGCWC	1 cut(s)	235
BsiSI	CCGG	4 cut(s)	47, 159, 441, 690
BslFI	GGGAC	1 cut(s)	770
BslI	CCNNNNNNNGG	3 cut(s)	689, 754, 791
BsmAI	GTCTC	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	770
Bsp1286I	GDGCHC	3 cut(s)	235, 336, 527
Bsp143I	GATC	2 cut(s)	291, 854
BspACI	CCGC	5 cut(s)	347, 435, 486, 582, 806
BspCNI	CTCAG	3 cut(s)	88, 126, 532
BspLI	GGNNCC	6 cut(s)	99, 427, 439, 493, 553, 633
BspPI	GGATC	1 cut(s)	849
BspT107I	GGYRCC	2 cut(s)	437, 631
BsrDI	GCAATG	2 cut(s)	267, 422
BsrI	ACTGG	1 cut(s)	770
BssECI	CCNNGG	1 cut(s)	262
BssMI	GATC	2 cut(s)	291, 854
BssNI	GRCGYC	2 cut(s)	438, 591
BssSI	CACGAG	1 cut(s)	606
BssT1I	CCWWGG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	5 cut(s)	205, 214, 311, 502, 574
Bst6I	CTCTTC	2 cut(s)	9, 221
BstACI	GRCGYC	2 cut(s)	438, 591
BstAPI	GCANNNNNTGC	1 cut(s)	803
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	4 cut(s)	75, 134, 519, 540
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	2 cut(s)	441, 606
BstHHI	GCGC	2 cut(s)	440, 605
BstKTI	GATC	2 cut(s)	294, 857
BstMAI	GTCTC	1 cut(s)	425
BstMBI	GATC	2 cut(s)	291, 854
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 164, 590, 803, 806
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	2 cut(s)	45, 124
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	336
BstV1I	GCAGC	2 cut(s)	712, 809
BstV2I	GAAGAC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	854
BstYI	RGATCY	1 cut(s)	854
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	219, 585, 763
Cac8I	GCNNGC	1 cut(s)	131
CaiI	CAGNNNCTG	1 cut(s)	858
CfoI	GCGC	2 cut(s)	440, 605
Cfr13I	GGNCC	3 cut(s)	144, 745, 782
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	66, 312
CviAII	CATG	2 cut(s)	241, 289
CviQI	GTAC	2 cut(s)	66, 312
DdeI	CTNAG	4 cut(s)	75, 134, 519, 540
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	2 cut(s)	293, 856
DpnII	GATC	2 cut(s)	291, 854
DriI	GACNNNNNGTC	1 cut(s)	357
Eam1104I	CTCTTC	2 cut(s)	9, 221
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	2 cut(s)	9, 221
EciI	GGCGGA	2 cut(s)	501, 571
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	1 cut(s)	527
Eco47I	GGWCC	3 cut(s)	144, 745, 782
Eco47III	AGCGCT	1 cut(s)	604
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	527
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	2 cut(s)	244, 292
FaiI	YATR	6 cut(s)	176, 196, 200, 242, 290, 338
FaqI	GGGAC	1 cut(s)	770
FatI	CATG	2 cut(s)	240, 288
FblI	GTMKAC	2 cut(s)	306, 567
Fnu4HI	GCNGC	4 cut(s)	436, 726, 798, 807
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	527
Fsp4HI	GCNGC	4 cut(s)	436, 726, 798, 807
FspBI	CTAG	1 cut(s)	711
GlaI	GCGC	2 cut(s)	439, 604
GluI	GCNGC	4 cut(s)	436, 726, 798, 807
GsaI	CCCAGC	2 cut(s)	347, 710
HaeII	RGCGCY	2 cut(s)	441, 606
HapII	CCGG	4 cut(s)	47, 159, 441, 690
HgaI	GACGC	1 cut(s)	599
HhaI	GCGC	2 cut(s)	440, 605
Hin1I	GRCGYC	2 cut(s)	438, 591
Hin1II	CATG	2 cut(s)	244, 292
Hin6I	GCGC	2 cut(s)	438, 603
HinP1I	GCGC	2 cut(s)	438, 603
HinfI	GANTC	7 cut(s)	162, 258, 321, 611, 648, 679, 715
HpaII	CCGG	4 cut(s)	47, 159, 441, 690
HphI	GGTGA	2 cut(s)	361, 679
Hpy166II	GTNNAC	3 cut(s)	307, 568, 667
Hpy188I	TCNGA	7 cut(s)	78, 425, 551, 624, 647, 782, 833
Hpy188III	TCNNGA	4 cut(s)	409, 608, 852, 858
Hpy8I	GTNNAC	3 cut(s)	307, 568, 667
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	3 cut(s)	157, 193, 565
HpyCH4III	ACNGT	5 cut(s)	205, 214, 311, 502, 574
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	2 cut(s)	415, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 164, 590, 803, 806
HpyF3I	CTNAG	4 cut(s)	75, 134, 519, 540
HpySE526I	ACGT	1 cut(s)	618
Hsp92I	GRCGYC	2 cut(s)	438, 591
Hsp92II	CATG	2 cut(s)	244, 292
HspAI	GCGC	2 cut(s)	438, 603
KasI	GGCGCC	1 cut(s)	437
Kzo9I	GATC	2 cut(s)	291, 854
LmnI	GCTCC	7 cut(s)	32, 97, 115, 425, 491, 722, 794
Lsp1109I	GCAGC	2 cut(s)	712, 809
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	1 cut(s)	711
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	349, 608
MalI	GATC	2 cut(s)	293, 856
MboI	GATC	2 cut(s)	291, 854
MboII	GAAGA	3 cut(s)	26, 238, 568
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	3 cut(s)	235, 336, 527
MluCI	AATT	1 cut(s)	699
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	2 cut(s)	605, 724
MmeI	TCCRAC	2 cut(s)	235, 760
MnlI	CCTC	4 cut(s)	10, 45, 259, 482
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	347
MspI	CCGG	4 cut(s)	47, 159, 441, 690
MspR9I	CCNGG	2 cut(s)	47, 126
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	5 cut(s)	130, 164, 590, 803, 806
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	47
NdeII	GATC	2 cut(s)	291, 854
NlaIII	CATG	2 cut(s)	244, 292
NlaIV	GGNNCC	6 cut(s)	99, 427, 439, 493, 553, 633
NmeAIII	GCCGAG	2 cut(s)	193, 462
NmuCI	GTSAC	2 cut(s)	349, 608
NspI	RCATGY	1 cut(s)	244
PciI	ACATGT	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 555, 756
PfeI	GAWTC	5 cut(s)	162, 258, 321, 648, 679
PflMI	CCANNNNNTGG	1 cut(s)	791
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	437, 727, 799, 808
PleI	GAGTC	2 cut(s)	605, 723
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	2 cut(s)	605, 723
PscI	ACATGT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	124
PspFI	CCCAGC	2 cut(s)	343, 706
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	6 cut(s)	99, 427, 439, 493, 553, 633
PspPI	GGNCC	3 cut(s)	144, 745, 782
PstNI	CAGNNNCTG	1 cut(s)	858
PsuI	RGATCY	1 cut(s)	854
RsaI	GTAC	2 cut(s)	67, 313
RsaNI	GTAC	2 cut(s)	66, 312
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	4 cut(s)	436, 726, 798, 807
Sau3AI	GATC	2 cut(s)	291, 854
Sau96I	GGNCC	3 cut(s)	144, 745, 782
SchI	GAGTC	2 cut(s)	605, 724
ScrFI	CCNGG	2 cut(s)	47, 126
SduI	GDGCHC	3 cut(s)	235, 336, 527
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	151
SfoI	GGCGCC	1 cut(s)	439
SinI	GGWCC	3 cut(s)	144, 745, 782
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	699
SsiI	CCGC	5 cut(s)	347, 435, 486, 582, 806
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	711
StyD4I	CCNGG	2 cut(s)	45, 124
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	5 cut(s)	205, 214, 311, 502, 574
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	2 cut(s)	25, 120
TasI	AATT	1 cut(s)	699
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	2 cut(s)	438, 809
TfiI	GAWTC	5 cut(s)	162, 258, 321, 648, 679
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	3 cut(s)	219, 592, 770
TseFI	GTSAC	2 cut(s)	349, 608
TseI	GCWGC	2 cut(s)	725, 797
Tsp45I	GTSAC	2 cut(s)	349, 608
TspDTI	ATGAA	2 cut(s)	163, 778
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	219, 592, 770
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	3 cut(s)	144, 745, 782
XceI	RCATGY	1 cut(s)	244
XmiI	GTMKAC	2 cut(s)	306, 567
XspI	CTAG	1 cut(s)	711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.