Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

14886713 .. 14889913

Gene Structure 3201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG166200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGGGTAAGGAAGAGGATGTTAAGGTTGGAGCCACCAAGTTCCCAGAGAAACAACCTTTGGGGACATCAGCTCAGACACACAAGGACTACAAGGACCCACCACCAGCTCCATTGTTTGAACCTCATGAGCTCATCTCATGGTCTTTCTATAGAGCTGGGATTGCCGAGTTTGTGGCCACATTCTTGTTCCTCTACATCAGTGTGTTGACTGTGATGGGGGTCGATAGGGAACCAACCAAGTGTACCTCTGTGGGTGTTCAGGGAATTGCTTGGGCCTTTGGTGGTATGATCTTTGCACTGGTCTACTGTACTGCTGGTATCTCAGGTGGACACATTAACCCAGCTGTGACCTTTGGTCTGTTCCTAGCAAGGAAGCTCTCCCTCACCAGAGCTGTTTTCTACATCATCATGCAGACCCTTGGAGCCATTGCTGGTGCTGGAGTTGTGAAGGCCTTCCAGAAGACCCAGTATGAGCTTTTGGGTGGTGGAGCCAACTATGTGAACCATGGCTACACCAAGGGTGATGGCCTTGGGGCTGAGATTGTTGGCACCTTTGTGCTTGTTTACACTGTCTTCTCTGCTACTGATGCTAAGAGGAAAGCTAGAGACTCTCATGTCCCTGTAAGTAATTCTTTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

214

Amino Acids

23.01

Weight (kDa)

8.45

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	45 - 208	1.7e-53	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	551
AccI	GTMKAC	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	177
AfaI	GTAC	2 cut(s)	247, 313
AgsI	TTSAA	1 cut(s)	122
AhdI	GACNNNNNGTC	1 cut(s)	357
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AleI	CACNNNNGTG	1 cut(s)	557
AluBI	AGCT	9 cut(s)	74, 110, 133, 158, 347, 379, 395, 478, 605
AluI	AGCT	9 cut(s)	74, 110, 133, 158, 347, 379, 395, 478, 605
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	603
AoxI	GGCC	4 cut(s)	177, 276, 453, 529
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	97, 276
AsuHPI	GGTGA	2 cut(s)	379, 536
AvaII	GGWCC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	2 cut(s)	470, 568
Bbv12I	GWGCWC	1 cut(s)	135
BccI	CCATC	2 cut(s)	211, 521
BcoDI	GTCTC	1 cut(s)	603
BfaI	CTAG	2 cut(s)	368, 606
BfmI	CTRYAG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	97
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	97, 276
BmiI	GGNNCC	6 cut(s)	34, 99, 234, 427, 493, 553
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	580
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	470, 568
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	421, 508, 519, 532
Bse1I	ACTGG	2 cut(s)	306, 469
Bse3DI	GCAATG	1 cut(s)	429
BseDI	CCNNGG	4 cut(s)	421, 508, 519, 532
BseGI	GGATG	1 cut(s)	25
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	3 cut(s)	89, 339, 531
BseNI	ACTGG	2 cut(s)	306, 469
BseYI	CCCAGC	2 cut(s)	158, 343
BshFI	GGCC	4 cut(s)	179, 278, 455, 531
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	79, 605
BsmAI	GTCTC	1 cut(s)	603
BsmFI	GGGAC	2 cut(s)	79, 605
BsnI	GGCC	4 cut(s)	179, 278, 455, 531
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	1 cut(s)	291
Bsp19I	CCATGG	1 cut(s)	508
BspANI	GGCC	4 cut(s)	179, 278, 455, 531
BspCNI	CTCAG	3 cut(s)	88, 338, 532
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	6 cut(s)	34, 99, 234, 427, 493, 553
BspT107I	GGYRCC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	2 cut(s)	306, 469
BssECI	CCNNGG	4 cut(s)	421, 508, 519, 532
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	4 cut(s)	421, 508, 519, 532
Bst4CI	ACNGT	3 cut(s)	214, 311, 574
Bst6I	CTCTTC	1 cut(s)	9
BstDEI	CTNAG	4 cut(s)	75, 325, 540, 594
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	603
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 590
BstSFI	CTRYAG	1 cut(s)	151
BstV2I	GAAGAC	2 cut(s)	470, 568
BsuRI	GGCC	4 cut(s)	179, 278, 455, 531
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	1 cut(s)	25
BtsIMutI	CAGTG	3 cut(s)	208, 299, 570
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	97, 276
Csp6I	GTAC	2 cut(s)	246, 312
CviAII	CATG	5 cut(s)	128, 141, 412, 509, 617
CviQI	GTAC	2 cut(s)	246, 312
DdeI	CTNAG	4 cut(s)	75, 325, 540, 594
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
DrdI	GACNNNNNNGTC	1 cut(s)	617
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	1 cut(s)	9
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	9
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	4 cut(s)	421, 508, 519, 532
Eco147I	AGGCCT	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	97
EcoT14I	CCWWGG	4 cut(s)	421, 508, 519, 532
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	4 cut(s)	421, 508, 519, 532
FaeI	CATG	5 cut(s)	131, 144, 415, 512, 620
FaiI	YATR	9 cut(s)	129, 142, 153, 290, 413, 474, 501, 510, 618
FalI	AAGNNNNNCTT	1 cut(s)	619
FaqI	GGGAC	2 cut(s)	79, 605
FatI	CATG	5 cut(s)	127, 140, 411, 508, 616
FblI	GTMKAC	1 cut(s)	306
FokI	GGATG	1 cut(s)	32
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	2 cut(s)	368, 606
GsaI	CCCAGC	2 cut(s)	162, 347
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	4 cut(s)	179, 278, 455, 531
Hin1II	CATG	5 cut(s)	131, 144, 415, 512, 620
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	611
HphI	GGTGA	2 cut(s)	379, 536
Hpy166II	GTNNAC	6 cut(s)	210, 246, 307, 332, 505, 568
Hpy188I	TCNGA	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	128, 460
Hpy8I	GTNNAC	6 cut(s)	210, 246, 307, 332, 505, 568
HpyAV	CCTTC	2 cut(s)	445, 466
HpyCH4III	ACNGT	3 cut(s)	214, 311, 574
HpyCH4V	TGCA	2 cut(s)	299, 415
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 590
HpyF3I	CTNAG	4 cut(s)	75, 325, 540, 594
Hsp92II	CATG	5 cut(s)	131, 144, 415, 512, 620
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	4 cut(s)	32, 115, 425, 491
LweI	GCATC	1 cut(s)	580
MaeI	CTAG	2 cut(s)	368, 606
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	26, 475, 568
MhlI	GDGCHC	1 cut(s)	135
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	267, 631
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	6 cut(s)	10, 135, 203, 259, 395, 591
Mox20I	TGGCCA	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	455
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	3 cut(s)	24, 339, 643
MslI	CAYNNNNRTG	3 cut(s)	203, 410, 557
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	347
MwoI	GCNNNNNNNGC	2 cut(s)	164, 590
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	5 cut(s)	131, 144, 415, 512, 620
NlaIV	GGNNCC	6 cut(s)	34, 99, 234, 427, 493, 553
NmeAIII	GCCGAG	1 cut(s)	193
NmuCI	GTSAC	1 cut(s)	349
OliI	CACNNNNGTG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	455
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	97
PspFI	CCCAGC	2 cut(s)	158, 343
PspN4I	GGNNCC	6 cut(s)	34, 99, 234, 427, 493, 553
PspPI	GGNCC	2 cut(s)	97, 276
PspPPI	RGGWCCY	1 cut(s)	97
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	2 cut(s)	247, 313
RsaNI	GTAC	2 cut(s)	246, 312
RseI	CAYNNNNRTG	3 cut(s)	203, 410, 557
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	3 cut(s)	24, 339, 643
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	97, 276
SchI	GAGTC	1 cut(s)	605
SduI	GDGCHC	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	580
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	3 cut(s)	203, 410, 557
Sse9I	AATT	2 cut(s)	267, 631
SseBI	AGGCCT	1 cut(s)	455
SspMI	CTAG	2 cut(s)	368, 606
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	455
StyI	CCWWGG	4 cut(s)	421, 508, 519, 532
TaaI	ACNGT	3 cut(s)	214, 311, 574
TaqI	TCGA	1 cut(s)	225
TasI	AATT	2 cut(s)	267, 631
TatI	WGTACW	1 cut(s)	311
Tru1I	TTAA	3 cut(s)	24, 339, 643
Tru9I	TTAA	3 cut(s)	24, 339, 643
TscAI	CASTG	3 cut(s)	208, 306, 577
TseFI	GTSAC	1 cut(s)	349
Tsp45I	GTSAC	1 cut(s)	349
TspRI	CASTG	3 cut(s)	208, 306, 577
VpaK11BI	GGWCC	1 cut(s)	97
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	2 cut(s)	368, 606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.