Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

12978417 .. 12980904

Gene Structure 2488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG167000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGGGTAAGGAAGAGGATGTTAAGGTTGGAGCCACCAAGTTCCCAGAGAAACAACCTTTGGGGACATCAGCTCAGACACACAAGGACTACAAGGACCCACCACCAGCTCCATTGTTTGAACCTCATGAGCTCATCTCATGGTCTTTCTATAGAGCTGGGATTGCTGAGTTTGTGGCCACATTCTTGTTCCTCTACATCAGTGTGTTGACTGTGATGGGGGTCAATAGGGAACCAACCAAGTGTACCTCTGTGGGTGTTCAGGGAATTGCTTGGGCCTTTGGTGGTATGATCTTTGCACTGGTCTACTGTACTGCTGGTATCTCAGGTGGACACATTAACCCAGCTGTGACCTTTGGTCTGTTCCTAGCAAGGAAGCTCTCCCTCACCAGAGCTGTTTTCTACATCATCATGCAGACCCTTGGAGCCATTGCTGGTGCTGGAGTTGTGAAGGCCTTCCAGAAGACCCAGTATGAGCTTTTGGGTGGTGGAGCCAACTATGTGAACCATGGCTACACCAAGGGTGATGGCCTTGGGGCTGAGATTGTTGGCACCTTTGTGCTTGTTTACACTGTCTTCTCTGCTACTGATGCTAAGAGGAAAGCTAGAGACTCTCATGTCCCTATTTTGGCTCCTCTTCCAATTGGGTTTGCTGTGTTCGTGGTTCACTTGGCCACCATCCCCATTACAGGAACTGGCATCAACCCTGCCAGGAGTCTCGGAGCTGCCATCATCTACGACAAGGAGCATGCTTGGGATGACCAGTGGATCTTCTGGGTTGGACCATTCATTGGTGCTGCACTTGCTGCTATGTACCACCAGATAGTCATCAGGGCCATTCCTTTCAAGTCCAGGGCCCAATCTTCTTCTTCGTACTCACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

294

Amino Acids

31.71

Weight (kDa)

8.93

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	45 - 273	1.8e-81	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	551
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccI	GTMKAC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	776
AcoI	YGGCCR	2 cut(s)	177, 672
AfaI	GTAC	4 cut(s)	247, 313, 815, 875
AfiI	CCNNNNNNNGG	3 cut(s)	628, 689, 791
AgsI	TTSAA	2 cut(s)	122, 847
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	2 cut(s)	710, 851
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AleI	CACNNNNGTG	1 cut(s)	557
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	2 cut(s)	603, 722
AlwI	GGATC	1 cut(s)	776
AlwNI	CAGNNNCTG	1 cut(s)	695
AoxI	GGCC	7 cut(s)	177, 276, 453, 529, 672, 834, 855
ApaI	GGGCCC	1 cut(s)	859
ApeKI	GCWGC	3 cut(s)	725, 797, 806
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	6 cut(s)	97, 276, 782, 834, 855, 856
AsuHPI	GGTGA	2 cut(s)	379, 536
AvaII	GGWCC	2 cut(s)	97, 782
BaeGI	GKGCMC	1 cut(s)	859
BalI	TGGCCA	2 cut(s)	179, 674
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	2 cut(s)	135, 859
BbsI	GAAGAC	2 cut(s)	470, 568
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	3 cut(s)	712, 784, 793
BccI	CCATC	4 cut(s)	211, 521, 686, 737
BciT130I	CCWGG	2 cut(s)	712, 853
BcoDI	GTCTC	2 cut(s)	603, 722
BfaI	CTAG	3 cut(s)	368, 606, 883
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	3 cut(s)	726, 798, 807
BlsI	GCNGC	3 cut(s)	727, 799, 808
Bme1390I	CCNGG	2 cut(s)	712, 853
Bme18I	GGWCC	2 cut(s)	97, 782
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	6 cut(s)	97, 276, 782, 834, 855, 856
BmiI	GGNNCC	8 cut(s)	34, 99, 234, 427, 493, 553, 633, 857
BmrFI	CCNGG	2 cut(s)	712, 853
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	2 cut(s)	580, 708
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	2 cut(s)	470, 568
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	462
BsaBI	GATNNNNATC	1 cut(s)	827
BsaJI	CCNNGG	5 cut(s)	421, 508, 519, 532, 852
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 689, 791
Bse1I	ACTGG	4 cut(s)	306, 469, 700, 763
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	827
BseBI	CCWGG	2 cut(s)	712, 853
BseDI	CCNNGG	5 cut(s)	421, 508, 519, 532, 852
BseGI	GGATG	3 cut(s)	25, 678, 763
BseJI	GATNNNNATC	1 cut(s)	827
BseLI	CCNNNNNNNGG	3 cut(s)	628, 689, 791
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	4 cut(s)	89, 159, 339, 531
BseNI	ACTGG	4 cut(s)	306, 469, 700, 763
BseRI	GAGGAG	1 cut(s)	624
BseSI	GKGCMC	1 cut(s)	859
BseXI	GCAGC	3 cut(s)	712, 784, 793
BseYI	CCCAGC	2 cut(s)	158, 343
BsgI	GTGCAG	1 cut(s)	783
BshFI	GGCC	7 cut(s)	179, 278, 455, 531, 674, 836, 857
BshNI	GGYRCC	1 cut(s)	551
BsiHKAI	GWGCWC	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	79, 605
BslI	CCNNNNNNNGG	3 cut(s)	628, 689, 791
BsmAI	GTCTC	2 cut(s)	603, 722
BsmFI	GGGAC	2 cut(s)	79, 605
BsnI	GGCC	7 cut(s)	179, 278, 455, 531, 674, 836, 857
Bsp120I	GGGCCC	1 cut(s)	855
Bsp1286I	GDGCHC	2 cut(s)	135, 859
Bsp143I	GATC	2 cut(s)	291, 768
Bsp19I	CCATGG	1 cut(s)	508
BspANI	GGCC	7 cut(s)	179, 278, 455, 531, 674, 836, 857
BspCNI	CTCAG	4 cut(s)	88, 160, 338, 532
BspHI	TCATGA	1 cut(s)	127
BspLI	GGNNCC	8 cut(s)	34, 99, 234, 427, 493, 553, 633, 857
BspPI	GGATC	1 cut(s)	776
BspT107I	GGYRCC	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	429
BsrI	ACTGG	4 cut(s)	306, 469, 700, 763
BssECI	CCNNGG	5 cut(s)	421, 508, 519, 532, 852
BssMI	GATC	2 cut(s)	291, 768
BssT1I	CCWWGG	4 cut(s)	421, 508, 519, 532
Bst2UI	CCWGG	2 cut(s)	712, 853
Bst4CI	ACNGT	3 cut(s)	214, 311, 574
Bst6I	CTCTTC	2 cut(s)	9, 642
BstAPI	GCANNNNNTGC	1 cut(s)	806
BstC8I	GCNNGC	1 cut(s)	750
BstDEI	CTNAG	5 cut(s)	75, 168, 325, 540, 594
BstDSI	CCRYGG	1 cut(s)	508
BstF5I	GGATG	3 cut(s)	25, 678, 763
BstKTI	GATC	2 cut(s)	294, 771
BstMAI	GTCTC	2 cut(s)	603, 722
BstMBI	GATC	2 cut(s)	291, 768
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
BstNI	CCWGG	2 cut(s)	712, 853
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	710, 851
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	1 cut(s)	859
BstV1I	GCAGC	3 cut(s)	712, 784, 793
BstV2I	GAAGAC	2 cut(s)	470, 568
BstX2I	RGATCY	1 cut(s)	768
BstYI	RGATCY	1 cut(s)	768
BsuRI	GGCC	7 cut(s)	179, 278, 455, 531, 674, 836, 857
BtgI	CCRYGG	1 cut(s)	508
BtsCI	GGATG	3 cut(s)	25, 678, 763
BtsIMutI	CAGTG	4 cut(s)	208, 299, 570, 770
Cac8I	GCNNGC	1 cut(s)	750
CaiI	CAGNNNCTG	1 cut(s)	695
CciI	TCATGA	1 cut(s)	127
Cfr13I	GGNCC	6 cut(s)	97, 276, 782, 834, 855, 856
Csp6I	GTAC	4 cut(s)	246, 312, 814, 874
CviAII	CATG	6 cut(s)	128, 141, 412, 509, 617, 749
CviQI	GTAC	4 cut(s)	246, 312, 814, 874
DdeI	CTNAG	5 cut(s)	75, 168, 325, 540, 594
DpnI	GATC	2 cut(s)	293, 770
DpnII	GATC	2 cut(s)	291, 768
DrdI	GACNNNNNNGTC	1 cut(s)	617
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	617
EaeI	YGGCCR	2 cut(s)	177, 672
Eam1104I	CTCTTC	2 cut(s)	9, 642
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	2 cut(s)	9, 642
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	4 cut(s)	421, 508, 519, 532
Eco147I	AGGCCT	1 cut(s)	455
Eco24I	GRGCYC	2 cut(s)	135, 859
Eco47I	GGWCC	2 cut(s)	97, 782
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoO109I	RGGNCCY	2 cut(s)	97, 855
EcoRII	CCWGG	2 cut(s)	710, 851
EcoT14I	CCWWGG	4 cut(s)	421, 508, 519, 532
EcoT38I	GRGCYC	2 cut(s)	135, 859
ErhI	CCWWGG	4 cut(s)	421, 508, 519, 532
FaeI	CATG	6 cut(s)	131, 144, 415, 512, 620, 752
FaqI	GGGAC	2 cut(s)	79, 605
FatI	CATG	6 cut(s)	127, 140, 411, 508, 616, 748
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	3 cut(s)	726, 798, 807
FokI	GGATG	3 cut(s)	32, 665, 770
FriOI	GRGCYC	2 cut(s)	135, 859
Fsp4HI	GCNGC	3 cut(s)	726, 798, 807
FspBI	CTAG	3 cut(s)	368, 606, 883
GluI	GCNGC	3 cut(s)	726, 798, 807
GsaI	CCCAGC	2 cut(s)	162, 347
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	7 cut(s)	179, 278, 455, 531, 674, 836, 857
Hin1II	CATG	6 cut(s)	131, 144, 415, 512, 620, 752
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	611, 715
HphI	GGTGA	2 cut(s)	379, 536
Hpy166II	GTNNAC	7 cut(s)	210, 246, 307, 332, 505, 568, 667
Hpy188I	TCNGA	2 cut(s)	78, 722
Hpy188III	TCNNGA	2 cut(s)	128, 460
Hpy8I	GTNNAC	7 cut(s)	210, 246, 307, 332, 505, 568, 667
HpyAV	CCTTC	2 cut(s)	445, 466
HpyCH4III	ACNGT	3 cut(s)	214, 311, 574
HpyCH4V	TGCA	3 cut(s)	299, 415, 800
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
HpyF3I	CTNAG	5 cut(s)	75, 168, 325, 540, 594
Hsp92II	CATG	6 cut(s)	131, 144, 415, 512, 620, 752
Kzo9I	GATC	2 cut(s)	291, 768
LmnI	GCTCC	7 cut(s)	32, 115, 425, 491, 637, 722, 745
Lsp1109I	GCAGC	3 cut(s)	712, 784, 793
LweI	GCATC	2 cut(s)	580, 708
MaeI	CTAG	3 cut(s)	368, 606, 883
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	2 cut(s)	293, 770
MboI	GATC	2 cut(s)	291, 768
MboII	GAAGA	8 cut(s)	26, 475, 568, 629, 763, 855, 858, 861
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	1 cut(s)	768
MhlI	GDGCHC	2 cut(s)	135, 859
MlsI	TGGCCA	2 cut(s)	179, 674
MluCI	AATT	2 cut(s)	267, 642
MluNI	TGGCCA	2 cut(s)	179, 674
MlyI	GAGTC	2 cut(s)	605, 724
MmeI	TCCRAC	2 cut(s)	10, 760
MnlI	CCTC	7 cut(s)	10, 135, 203, 259, 395, 591, 645
Mox20I	TGGCCA	2 cut(s)	179, 674
MroXI	GAANNNNTTC	1 cut(s)	455
MscI	TGGCCA	2 cut(s)	179, 674
MseI	TTAA	2 cut(s)	24, 339
MslI	CAYNNNNRTG	3 cut(s)	203, 410, 557
Msp20I	TGGCCA	2 cut(s)	179, 674
MspA1I	CMGCKG	1 cut(s)	347
MspR9I	CCNGG	2 cut(s)	712, 853
MunI	CAATTG	1 cut(s)	642
MvaI	CCWGG	2 cut(s)	712, 853
MwoI	GCNNNNNNNGC	4 cut(s)	164, 590, 803, 806
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	291, 768
NlaIII	CATG	6 cut(s)	131, 144, 415, 512, 620, 752
NlaIV	GGNNCC	8 cut(s)	34, 99, 234, 427, 493, 553, 633, 857
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	1 cut(s)	752
OliI	CACNNNNGTG	1 cut(s)	557
PaeI	GCATGC	1 cut(s)	752
PagI	TCATGA	1 cut(s)	127
PceI	AGGCCT	1 cut(s)	455
PdmI	GAANNNNTTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	3 cut(s)	727, 799, 808
PleI	GAGTC	2 cut(s)	605, 723
PpsI	GAGTC	2 cut(s)	605, 723
PpuMI	RGGWCCY	1 cut(s)	97
Psp124BI	GAGCTC	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	97
Psp6I	CCWGG	2 cut(s)	710, 851
PspFI	CCCAGC	2 cut(s)	158, 343
PspGI	CCWGG	2 cut(s)	710, 851
PspN4I	GGNNCC	8 cut(s)	34, 99, 234, 427, 493, 553, 633, 857
PspOMI	GGGCCC	1 cut(s)	855
PspPI	GGNCC	6 cut(s)	97, 276, 782, 834, 855, 856
PspPPI	RGGWCCY	1 cut(s)	97
PsrI	GAACNNNNNNTAC	2 cut(s)	497, 529
PstNI	CAGNNNCTG	1 cut(s)	695
PsuI	RGATCY	1 cut(s)	768
PvuII	CAGCTG	1 cut(s)	347
RsaI	GTAC	4 cut(s)	247, 313, 815, 875
RsaNI	GTAC	4 cut(s)	246, 312, 814, 874
RseI	CAYNNNNRTG	3 cut(s)	203, 410, 557
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	24, 339
SatI	GCNGC	3 cut(s)	726, 798, 807
Sau3AI	GATC	2 cut(s)	291, 768
Sau96I	GGNCC	6 cut(s)	97, 276, 782, 834, 855, 856
SchI	GAGTC	2 cut(s)	605, 724
ScrFI	CCNGG	2 cut(s)	712, 853
SduI	GDGCHC	2 cut(s)	135, 859
SfaNI	GCATC	2 cut(s)	580, 708
SfcI	CTRYAG	1 cut(s)	151
SinI	GGWCC	2 cut(s)	97, 782
SmiMI	CAYNNNNRTG	3 cut(s)	203, 410, 557
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	2 cut(s)	267, 642
SseBI	AGGCCT	1 cut(s)	455
SspMI	CTAG	3 cut(s)	368, 606, 883
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	455
StyD4I	CCNGG	2 cut(s)	710, 851
StyI	CCWWGG	4 cut(s)	421, 508, 519, 532
TaaI	ACNGT	3 cut(s)	214, 311, 574
TasI	AATT	2 cut(s)	267, 642
TatI	WGTACW	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	24, 339
Tru9I	TTAA	2 cut(s)	24, 339
TscAI	CASTG	4 cut(s)	208, 306, 577, 770
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	725, 797, 806
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	778
TspRI	CASTG	4 cut(s)	208, 306, 577, 770
Van91I	CCANNNNNTGG	1 cut(s)	791
VpaK11BI	GGWCC	2 cut(s)	97, 782
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	3 cut(s)	368, 606, 883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.