Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Reverse (-)

185285 .. 187680

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAGGCAAAGAAGAAGATGTACGAGTGGGAGCTAACAAGTTCCCGGAGAGGCAACCCATCGGTACATCGGCTCAGTCCACCGACAAGGACTACAAAGAGCCACCTCCTGCGCCACTGTTCGAGCCCGGCGAGCTCAGCTCATGGTCTTTCTACAGAGCCGGAATAGCTGAGTTTATCGCTACTTTCTTGTTTCTCTACATCACTGTTTTGACTGTAATGGGAGTTAAGAGAGCACCAAACATGTGTGCTTCTGTTGGAATCCAAGGTATCGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTCTACTGTACTGCTGGAATTTCAGGTGGACACATCAACCCTGCTGTAACATTCGGTCTGTTCTTGGCTCGGAAGTTATCTCTGACCAGAGCAGTGTTCTACATGATTATGCAATGTCTTGGAGCCATCTGTGGTGCCGGAGTCGTCAAAGGTTTCCAGCCAACGCCGTACCAGACTCTCGGTGGTGGTGCTAACACCGTTGCTCATGGCTACACCAAAGGTTCTGGCCTTGGTGCTGAAATCATCGGAACATTCGTTCTCGTCTACACTGTCTTCTCCGCCACCGACGCCAAGAGAAGCGCCCGTGACTCACACGTCCCGATTTTGGCGCCGCTCCCAATCGGATTTGCAGTGTTCTTGGTACACTTGGCAACAATACCGATCACCGGGACCGGAATCAACCCAGCTAGAAGTCTTGGAGCCGCAATTATCTACAACAAGGACCACTCTTGGGATGACCATTGGATTTTCTGGGTTGGACCATTCATTGGAGCAGCTCTAGCAGCACTATATCACCAGATTGTCATCAGAGCGATTCCTTTCAAGAGCAAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

287

Amino Acids

30.69

Weight (kDa)

9.0

Isoelectric Point (pI)

32.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	45 - 210	1.2e-55	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
AccB1I	GGYRCC	2 cut(s)	440, 634
AccB7I	CCANNNNNTGG	1 cut(s)	794
AccBSI	CCGCTC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	309, 570
AciI	CCGC	3 cut(s)	585, 638, 729
AcsI	RAATTY	1 cut(s)	324
AcyI	GRCGYC	2 cut(s)	594, 635
AfaI	GTAC	5 cut(s)	24, 67, 316, 476, 669
AfiI	CCNNNNNNNGG	4 cut(s)	631, 692, 757, 794
AflIII	ACRYGT	2 cut(s)	243, 619
AgsI	TTSAA	1 cut(s)	850
AjiI	CACGTC	1 cut(s)	622
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
AluBI	AGCT	6 cut(s)	35, 136, 141, 170, 713, 803
AluI	AGCT	6 cut(s)	35, 136, 141, 170, 713, 803
Alw21I	GWGCWC	2 cut(s)	138, 238
AoxI	GGCC	1 cut(s)	532
ApeKI	GCWGC	2 cut(s)	800, 809
ApoI	RAATTY	1 cut(s)	324
AspLEI	GCGC	3 cut(s)	115, 608, 637
AspS9I	GGNCC	3 cut(s)	696, 748, 785
AsuC2I	CCSGG	3 cut(s)	47, 129, 694
AsuHPI	GGTGA	2 cut(s)	682, 812
AvaII	GGWCC	3 cut(s)	696, 748, 785
BanI	GGYRCC	2 cut(s)	440, 634
BanII	GRGCYC	2 cut(s)	129, 138
BarI	GAAGNNNNNNTAC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	571
Bbv12I	GWGCWC	2 cut(s)	138, 238
BbvI	GCAGC	2 cut(s)	812, 821
BccI	CCATC	2 cut(s)	68, 440
BceAI	ACGGC	1 cut(s)	457
BcnI	CCSGG	3 cut(s)	47, 129, 694
BfaI	CTAG	2 cut(s)	714, 806
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	2 cut(s)	609, 638
BisI	GCNGC	4 cut(s)	638, 729, 801, 810
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	4 cut(s)	639, 730, 802, 811
Bme1390I	CCNGG	3 cut(s)	47, 129, 694
Bme18I	GGWCC	3 cut(s)	696, 748, 785
BmgBI	CACGTC	1 cut(s)	622
BmgT120I	GGNCC	3 cut(s)	696, 748, 785
BmiI	GGNNCC	5 cut(s)	430, 442, 636, 697, 727
BmrFI	CCNGG	3 cut(s)	47, 129, 694
BpiI	GAAGAC	1 cut(s)	571
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuMI	CCSGG	3 cut(s)	47, 129, 694
BsaBI	GATNNNNATC	1 cut(s)	830
BsaHI	GRCGYC	2 cut(s)	594, 635
BsaJI	CCNNGG	2 cut(s)	265, 535
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	4 cut(s)	631, 692, 757, 794
Bse3DI	GCAATG	1 cut(s)	425
Bse8I	GATNNNNATC	1 cut(s)	830
BseDI	CCNNGG	2 cut(s)	265, 535
BseGI	GGATG	1 cut(s)	766
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	4 cut(s)	631, 692, 757, 794
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	3 cut(s)	89, 151, 162
BseXI	GCAGC	2 cut(s)	812, 821
BseYI	CCCAGC	1 cut(s)	709
BshFI	GGCC	1 cut(s)	534
BshNI	GGYRCC	2 cut(s)	440, 634
BsiHKAI	GWGCWC	2 cut(s)	138, 238
BsiSI	CCGG	6 cut(s)	47, 129, 162, 444, 693, 699
BslFI	GGGAC	2 cut(s)	608, 709
BslI	CCNNNNNNNGG	4 cut(s)	631, 692, 757, 794
BsmFI	GGGAC	2 cut(s)	608, 709
BsnI	GGCC	1 cut(s)	534
Bsp1286I	GDGCHC	3 cut(s)	129, 138, 238
Bsp143I	GATC	2 cut(s)	294, 687
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	3 cut(s)	585, 638, 729
BspANI	GGCC	1 cut(s)	534
BspCNI	CTCAG	3 cut(s)	88, 150, 163
BspLI	GGNNCC	5 cut(s)	430, 442, 636, 697, 727
BspT107I	GGYRCC	2 cut(s)	440, 634
BsrBI	CCGCTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	265, 535
BssMI	GATC	2 cut(s)	294, 687
BssNI	GRCGYC	2 cut(s)	594, 635
BssT1I	CCWWGG	2 cut(s)	265, 535
Bst4CI	ACNGT	6 cut(s)	120, 208, 217, 314, 505, 577
BstACI	GRCGYC	2 cut(s)	594, 635
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	3 cut(s)	75, 137, 171
BstF5I	GGATG	1 cut(s)	766
BstH2I	RGCGCY	2 cut(s)	609, 638
BstHHI	GCGC	3 cut(s)	115, 608, 637
BstKTI	GATC	2 cut(s)	297, 690
BstMBI	GATC	2 cut(s)	294, 687
BstMWI	GCNNNNNNNGC	6 cut(s)	133, 138, 167, 593, 806, 809
BstNSI	RCATGY	1 cut(s)	247
BstSCI	CCNGG	3 cut(s)	45, 127, 692
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	812, 821
BstV2I	GAAGAC	1 cut(s)	571
BsuRI	GGCC	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	622
BtsCI	GGATG	1 cut(s)	766
BtsI	GCAGTG	2 cut(s)	405, 663
BtsIMutI	CAGTG	5 cut(s)	116, 204, 405, 573, 663
Cac8I	GCNNGC	1 cut(s)	134
CfoI	GCGC	3 cut(s)	115, 608, 637
Cfr13I	GGNCC	3 cut(s)	696, 748, 785
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	5 cut(s)	23, 66, 315, 475, 668
CviAII	CATG	5 cut(s)	144, 244, 292, 409, 512
CviQI	GTAC	5 cut(s)	23, 66, 315, 475, 668
DdeI	CTNAG	3 cut(s)	75, 137, 171
DinI	GGCGCC	1 cut(s)	636
DpnI	GATC	2 cut(s)	296, 689
DpnII	GATC	2 cut(s)	294, 687
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EciI	GGCGGA	1 cut(s)	574
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	2 cut(s)	265, 535
Eco24I	GRGCYC	2 cut(s)	129, 138
Eco47I	GGWCC	3 cut(s)	696, 748, 785
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	265, 535
EcoT38I	GRGCYC	2 cut(s)	129, 138
EgeI	GGCGCC	1 cut(s)	636
EheI	GGCGCC	1 cut(s)	636
ErhI	CCWWGG	2 cut(s)	265, 535
FaeI	CATG	5 cut(s)	147, 247, 295, 412, 515
FaiI	YATR	7 cut(s)	145, 245, 293, 410, 416, 513, 817
FaqI	GGGAC	2 cut(s)	608, 709
FatI	CATG	5 cut(s)	143, 243, 291, 408, 511
FblI	GTMKAC	2 cut(s)	309, 570
Fnu4HI	GCNGC	4 cut(s)	638, 729, 801, 810
FokI	GGATG	1 cut(s)	773
FriOI	GRGCYC	2 cut(s)	129, 138
Fsp4HI	GCNGC	4 cut(s)	638, 729, 801, 810
FspBI	CTAG	2 cut(s)	714, 806
GlaI	GCGC	3 cut(s)	114, 607, 636
GluI	GCNGC	4 cut(s)	638, 729, 801, 810
GsaI	CCCAGC	1 cut(s)	713
HaeII	RGCGCY	2 cut(s)	609, 638
HaeIII	GGCC	1 cut(s)	534
HapII	CCGG	6 cut(s)	47, 129, 162, 444, 693, 699
HgaI	GACGC	1 cut(s)	602
HhaI	GCGC	3 cut(s)	115, 608, 637
Hin1I	GRCGYC	2 cut(s)	594, 635
Hin1II	CATG	5 cut(s)	147, 247, 295, 412, 515
Hin6I	GCGC	3 cut(s)	113, 606, 635
HinP1I	GCGC	3 cut(s)	113, 606, 635
HinfI	GANTC	6 cut(s)	261, 447, 481, 614, 702, 841
HpaII	CCGG	6 cut(s)	47, 129, 162, 444, 693, 699
HphI	GGTGA	2 cut(s)	682, 812
Hpy166II	GTNNAC	5 cut(s)	81, 310, 335, 571, 670
Hpy188I	TCNGA	5 cut(s)	378, 390, 554, 650, 836
Hpy188III	TCNNGA	2 cut(s)	625, 850
Hpy8I	GTNNAC	5 cut(s)	81, 310, 335, 571, 670
Hpy99I	CGWCG	1 cut(s)	596
HpyCH4III	ACNGT	6 cut(s)	120, 208, 217, 314, 505, 577
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	2 cut(s)	418, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	133, 138, 167, 593, 806, 809
HpyF3I	CTNAG	3 cut(s)	75, 137, 171
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	2 cut(s)	594, 635
Hsp92II	CATG	5 cut(s)	147, 247, 295, 412, 515
HspAI	GCGC	3 cut(s)	113, 606, 635
KasI	GGCGCC	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	294, 687
LmnI	GCTCC	5 cut(s)	32, 428, 645, 725, 797
Lsp1109I	GCAGC	2 cut(s)	812, 821
MaeI	CTAG	2 cut(s)	714, 806
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	352, 611
MalI	GATC	2 cut(s)	296, 689
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	2 cut(s)	294, 687
MboII	GAAGA	3 cut(s)	26, 29, 571
MhlI	GDGCHC	3 cut(s)	129, 138, 238
MluCI	AATT	2 cut(s)	324, 732
Mly113I	GGCGCC	1 cut(s)	635
MlyI	GAGTC	3 cut(s)	456, 475, 608
MmeI	TCCRAC	2 cut(s)	238, 763
MnlI	CCTC	2 cut(s)	45, 117
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	6 cut(s)	47, 129, 162, 444, 693, 699
MspR9I	CCNGG	3 cut(s)	47, 129, 694
MwoI	GCNNNNNNNGC	6 cut(s)	133, 138, 167, 593, 806, 809
NarI	GGCGCC	1 cut(s)	635
NciI	CCSGG	3 cut(s)	47, 129, 694
NdeII	GATC	2 cut(s)	294, 687
NlaIII	CATG	5 cut(s)	147, 247, 295, 412, 515
NlaIV	GGNNCC	5 cut(s)	430, 442, 636, 697, 727
NmuCI	GTSAC	1 cut(s)	611
NspI	RCATGY	1 cut(s)	247
PciI	ACATGT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 558
PfeI	GAWTC	3 cut(s)	261, 702, 841
PflMI	CCANNNNNTGG	1 cut(s)	794
PfoI	TCCNGGA	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	639, 730, 802, 811
PleI	GAGTC	3 cut(s)	455, 475, 608
PluTI	GGCGCC	1 cut(s)	638
PpsI	GAGTC	3 cut(s)	455, 475, 608
PscI	ACATGT	1 cut(s)	243
Psp124BI	GAGCTC	1 cut(s)	138
PspFI	CCCAGC	1 cut(s)	709
PspN4I	GGNNCC	5 cut(s)	430, 442, 636, 697, 727
PspPI	GGNCC	3 cut(s)	696, 748, 785
RsaI	GTAC	5 cut(s)	24, 67, 316, 476, 669
RsaNI	GTAC	5 cut(s)	23, 66, 315, 475, 668
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	4 cut(s)	638, 729, 801, 810
Sau3AI	GATC	2 cut(s)	294, 687
Sau96I	GGNCC	3 cut(s)	696, 748, 785
SchI	GAGTC	3 cut(s)	456, 475, 608
ScrFI	CCNGG	3 cut(s)	47, 129, 694
SduI	GDGCHC	3 cut(s)	129, 138, 238
SfcI	CTRYAG	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	636
SinI	GGWCC	3 cut(s)	696, 748, 785
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	324, 732
SsiI	CCGC	3 cut(s)	585, 638, 729
SspDI	GGCGCC	1 cut(s)	634
SspMI	CTAG	2 cut(s)	714, 806
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	45, 127, 692
StyI	CCWWGG	2 cut(s)	265, 535
TaaI	ACNGT	6 cut(s)	120, 208, 217, 314, 505, 577
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	324, 732
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	2 cut(s)	640, 731
TfiI	GAWTC	3 cut(s)	261, 702, 841
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	5 cut(s)	123, 211, 405, 580, 663
TseFI	GTSAC	1 cut(s)	611
TseI	GCWGC	2 cut(s)	800, 809
Tsp45I	GTSAC	1 cut(s)	611
TspDTI	ATGAA	1 cut(s)	781
TspRI	CASTG	5 cut(s)	123, 211, 405, 580, 663
Van91I	CCANNNNNTGG	1 cut(s)	794
VpaK11BI	GGWCC	3 cut(s)	696, 748, 785
XapI	RAATTY	1 cut(s)	324
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	485
XmiI	GTMKAC	2 cut(s)	309, 570
XspI	CTAG	2 cut(s)	714, 806

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.