FvH4_7g24120

Belongs to the MIP aquaporin (TC 1.A.8) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
18651283 .. 18653509
2227 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24120.t1

Sequence Viewer

Length: 873 bp
ATGGAGGCCAAGGAGGAAGATGTGAGCTTGGGAGCCAACAAGTACCCGGAGAGGCAGCCCATCGGAACCGCCGCTCAGAGCCAGGACGACGGCAAGGACTACAAGGAGCCTCCCCCGGCACCGCTCTTCGAGCCAGGCGAGCTGACGTCATGGTCGTTTTACAGGGCCGGGATCGCCGAGTTCATCGCCACCTTTCTGTTTCTCTACATAACCGTCTTGACTGTGATGGGAGTCTTGAAGGGTCCGACTAAGTGCCAAACCGTAGGTATTCAAGGGATCGCTTGGGCTTTTGGTGGTATGATCTTCGCCTTGGTTTACTGTACCGCCGGCATCTCAGGGGGTCACATAAACCCGGCTGTGACTTTCGGCCTTTTCTTGGCCAGGAAGCTGTCCTTGACTAGGGCGGTGTTCTACATCATCATGCAGACCCTTGGCGCCATAGCCGGAGCTGCCGTGGTGAAAGCTTTTGAGAACAAGAACCATTTCTTCGAGTTGAACGGTGGTGGCGCCAACAGTGTAGCCCATGGCTACACCAAGGGCAGTGGTCTTGGTGCTGAAATTATTGGCACCTTTGTCCTTGTCTACACCGTCTTCTCCGCCACTGACGCCAAGCGTAGCGCCAGAGACTCCCATGTCCCGATTTTGGCCCCGTTGCCAATTGGGTTCGCCGTGTTCTTGGTGCACTTGGCTACCATCCCCATTACCGGAACAGGTATTAACCCAGCTAGGAGTCTTGGTGCAGCCATCATCTACAACAAGAAGCATGCCTGGGATGACCACTGGATCTTCTGGGTTGGACCATTCATTGGTGCAGCACTTGCAGCTTTGTACCATGTGGTTGTGATCAGGGCCATTCCCTTCAAGAACAAGTGA

Protein Analysis

291

Amino Acids

31.06

Weight (kDa)

8.95

Isoelectric Point (pI)

29.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 47 - 278 3.8e-82 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 151, 632
AatII GACGTC 1 cut(s) 149
AccB1I GGYRCC 4 cut(s) 118, 434, 506, 566
AccB7I CCANNNNNTGG 1 cut(s) 806
AccBSI CCGCTC 2 cut(s) 74, 124
AccI GTMKAC 1 cut(s) 582
AciI CCGC 6 cut(s) 69, 72, 122, 324, 404, 597
AclWI GGATC 3 cut(s) 179, 284, 791
AcoI YGGCCR 1 cut(s) 378
AcyI GRCGYC 4 cut(s) 146, 435, 507, 606
AfaI GTAC 3 cut(s) 44, 322, 830
AfiI CCNNNNNNNGG 5 cut(s) 376, 399, 643, 704, 806
AgsI TTSAA 4 cut(s) 238, 272, 496, 862
AjnI CCWGG 4 cut(s) 81, 133, 380, 767
AluBI AGCT 7 cut(s) 27, 142, 388, 449, 464, 725, 824
AluI AGCT 7 cut(s) 27, 142, 388, 449, 464, 725, 824
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 1 cut(s) 618
Alw44I GTGCAC 1 cut(s) 680
AlwI GGATC 3 cut(s) 179, 284, 791
AoxI GGCC 6 cut(s) 6, 165, 367, 378, 645, 849
ApaLI GTGCAC 1 cut(s) 680
ApeKI GCWGC 5 cut(s) 55, 449, 740, 812, 821
Asp700I GAANNNNTTC 1 cut(s) 482
AspLEI GCGC 3 cut(s) 437, 509, 620
AspS9I GGNCC 5 cut(s) 165, 242, 646, 797, 849
AsuC2I CCSGG 4 cut(s) 47, 116, 169, 353
AsuHPI GGTGA 1 cut(s) 469
AvaII GGWCC 2 cut(s) 242, 797
BaeGI GKGCMC 1 cut(s) 684
BalI TGGCCA 1 cut(s) 380
BanI GGYRCC 4 cut(s) 118, 434, 506, 566
BbsI GAAGAC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 5 cut(s) 67, 436, 752, 824, 833
BccI CCATC 4 cut(s) 68, 220, 701, 752
BceAI ACGGC 3 cut(s) 106, 437, 653
BciT130I CCWGG 4 cut(s) 83, 135, 382, 769
BclI TGATCA 1 cut(s) 843
BcnI CCSGG 4 cut(s) 47, 116, 169, 353
BcoDI GTCTC 1 cut(s) 618
BfaI CTAG 2 cut(s) 399, 726
BfoI RGCGCY 3 cut(s) 438, 510, 621
BisI GCNGC 6 cut(s) 56, 72, 450, 741, 813, 822
BlsI GCNGC 6 cut(s) 57, 73, 451, 742, 814, 823
Bme1390I CCNGG 8 cut(s) 47, 83, 116, 135, 169, 353, 382, 769
Bme18I GGWCC 2 cut(s) 242, 797
BmgT120I GGNCC 5 cut(s) 165, 242, 646, 797, 849
BmiI GGNNCC 9 cut(s) 34, 67, 108, 120, 243, 436, 508, 568, 648
BmrFI CCNGG 8 cut(s) 47, 83, 116, 135, 169, 353, 382, 769
BmsI GCATC 1 cut(s) 339
BpiI GAAGAC 1 cut(s) 583
BpuMI CCSGG 4 cut(s) 47, 116, 169, 353
BsaHI GRCGYC 4 cut(s) 146, 435, 507, 606
BsaJI CCNNGG 8 cut(s) 9, 114, 309, 430, 453, 523, 534, 768
BsaWI WCCGGW 1 cut(s) 704
BsaXI ACNNNNNCTCC 4 cut(s) 438, 468, 721, 751
Bsc4I CCNNNNNNNGG 5 cut(s) 376, 399, 643, 704, 806
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 785
BseBI CCWGG 4 cut(s) 83, 135, 382, 769
BseDI CCNNGG 8 cut(s) 9, 114, 309, 430, 453, 523, 534, 768
BseGI GGATG 2 cut(s) 693, 778
BseLI CCNNNNNNNGG 5 cut(s) 376, 399, 643, 704, 806
BseMII CTCAG 2 cut(s) 89, 348
BseNI ACTGG 1 cut(s) 785
BseSI GKGCMC 1 cut(s) 684
BseXI GCAGC 5 cut(s) 67, 436, 752, 824, 833
BseYI CCCAGC 1 cut(s) 721
BsgI GTGCAG 2 cut(s) 759, 831
BshFI GGCC 6 cut(s) 8, 167, 369, 380, 647, 851
BshNI GGYRCC 4 cut(s) 118, 434, 506, 566
BsiHKAI GWGCWC 1 cut(s) 684
BsiSI CCGG 7 cut(s) 47, 116, 168, 327, 353, 444, 705
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 5 cut(s) 376, 399, 643, 704, 806
BsmAI GTCTC 1 cut(s) 618
BsmFI GGGAC 1 cut(s) 620
BsnI GGCC 6 cut(s) 8, 167, 369, 380, 647, 851
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 5 cut(s) 171, 276, 300, 783, 843
Bsp19I CCATGG 1 cut(s) 523
BspACI CCGC 6 cut(s) 69, 72, 122, 324, 404, 597
BspANI GGCC 6 cut(s) 8, 167, 369, 380, 647, 851
BspCNI CTCAG 2 cut(s) 88, 347
BspLI GGNNCC 9 cut(s) 34, 67, 108, 120, 243, 436, 508, 568, 648
BspPI GGATC 3 cut(s) 179, 284, 791
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 4 cut(s) 118, 434, 506, 566
BsrBI CCGCTC 2 cut(s) 74, 124
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 785
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 8 cut(s) 9, 114, 309, 430, 453, 523, 534, 768
BssMI GATC 5 cut(s) 171, 276, 300, 783, 843
BssNI GRCGYC 4 cut(s) 146, 435, 507, 606
BssT1I CCWWGG 5 cut(s) 9, 309, 430, 523, 534
Bst2UI CCWGG 4 cut(s) 83, 135, 382, 769
Bst4CI ACNGT 7 cut(s) 214, 223, 262, 320, 500, 515, 589
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 4 cut(s) 146, 435, 507, 606
BstAPI GCANNNNNTGC 1 cut(s) 818
BstC8I GCNNGC 3 cut(s) 140, 328, 765
BstDEI CTNAG 3 cut(s) 75, 249, 334
BstDSI CCRYGG 2 cut(s) 453, 523
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 693, 778
BstH2I RGCGCY 3 cut(s) 438, 510, 621
BstHHI GCGC 3 cut(s) 437, 509, 620
BstKTI GATC 5 cut(s) 174, 279, 303, 786, 846
BstMAI GTCTC 1 cut(s) 618
BstMBI GATC 5 cut(s) 171, 276, 300, 783, 843
BstMWI GCNNNNNNNGC 7 cut(s) 130, 139, 173, 449, 605, 818, 821
BstNI CCWGG 4 cut(s) 83, 135, 382, 769
BstNSI RCATGY 1 cut(s) 767
BstSCI CCNGG 8 cut(s) 45, 81, 114, 133, 167, 351, 380, 767
BstSLI GKGCMC 1 cut(s) 684
BstV1I GCAGC 5 cut(s) 67, 436, 752, 824, 833
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BsuRI GGCC 6 cut(s) 8, 167, 369, 380, 647, 851
BtgI CCRYGG 2 cut(s) 453, 523
BtgZI GCGATG 1 cut(s) 169
BtsCI GGATG 2 cut(s) 693, 778
BtsI GCAGTG 1 cut(s) 547
BtsIMutI CAGTG 4 cut(s) 520, 547, 600, 778
Cac8I GCNNGC 3 cut(s) 140, 328, 765
CfoI GCGC 3 cut(s) 437, 509, 620
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 5 cut(s) 165, 242, 646, 797, 849
CseI GACGC 1 cut(s) 614
Csp6I GTAC 3 cut(s) 43, 321, 829
CspCI CAANNNNNGTGG 2 cut(s) 523, 558
CviAII CATG 6 cut(s) 150, 421, 524, 632, 764, 833
CviQI GTAC 3 cut(s) 43, 321, 829
DdeI CTNAG 3 cut(s) 75, 249, 334
DinI GGCGCC 2 cut(s) 436, 508
DpnI GATC 5 cut(s) 173, 278, 302, 785, 845
DpnII GATC 5 cut(s) 171, 276, 300, 783, 843
DrdI GACNNNNNNGTC 2 cut(s) 151, 632
DseDI GACNNNNNNGTC 2 cut(s) 151, 632
EaeI YGGCCR 1 cut(s) 378
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 586
Eco130I CCWWGG 5 cut(s) 9, 309, 430, 523, 534
Eco47I GGWCC 2 cut(s) 242, 797
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoRII CCWGG 4 cut(s) 81, 133, 380, 767
EcoT14I CCWWGG 5 cut(s) 9, 309, 430, 523, 534
EgeI GGCGCC 2 cut(s) 436, 508
EheI GGCGCC 2 cut(s) 436, 508
ErhI CCWWGG 5 cut(s) 9, 309, 430, 523, 534
FaeI CATG 6 cut(s) 153, 424, 527, 635, 767, 836
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FaqI GGGAC 1 cut(s) 620
FatI CATG 6 cut(s) 149, 420, 523, 631, 763, 832
FbaI TGATCA 1 cut(s) 843
FblI GTMKAC 1 cut(s) 582
Fnu4HI GCNGC 6 cut(s) 56, 72, 450, 741, 813, 822
FokI GGATG 2 cut(s) 680, 785
Fsp4HI GCNGC 6 cut(s) 56, 72, 450, 741, 813, 822
FspBI CTAG 2 cut(s) 399, 726
GlaI GCGC 3 cut(s) 436, 508, 619
GluI GCNGC 6 cut(s) 56, 72, 450, 741, 813, 822
GsaI CCCAGC 1 cut(s) 725
HaeII RGCGCY 3 cut(s) 438, 510, 621
HaeIII GGCC 6 cut(s) 8, 167, 369, 380, 647, 851
HapII CCGG 7 cut(s) 47, 116, 168, 327, 353, 444, 705
HgaI GACGC 1 cut(s) 614
HhaI GCGC 3 cut(s) 437, 509, 620
Hin1I GRCGYC 4 cut(s) 146, 435, 507, 606
Hin1II CATG 6 cut(s) 153, 424, 527, 635, 767, 836
Hin6I GCGC 3 cut(s) 435, 507, 618
HinP1I GCGC 3 cut(s) 435, 507, 618
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 3 cut(s) 231, 626, 730
HpaII CCGG 7 cut(s) 47, 116, 168, 327, 353, 444, 705
HphI GGTGA 1 cut(s) 469
Hpy166II GTNNAC 3 cut(s) 316, 583, 682
Hpy188I TCNGA 3 cut(s) 65, 78, 246
Hpy188III TCNNGA 4 cut(s) 217, 235, 637, 862
Hpy8I GTNNAC 3 cut(s) 316, 583, 682
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 2 cut(s) 232, 868
HpyCH4III ACNGT 7 cut(s) 214, 223, 262, 320, 500, 515, 589
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 5 cut(s) 424, 682, 740, 812, 821
HpyF10VI GCNNNNNNNGC 7 cut(s) 130, 139, 173, 449, 605, 818, 821
HpyF3I CTNAG 3 cut(s) 75, 249, 334
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 4 cut(s) 146, 435, 507, 606
Hsp92II CATG 6 cut(s) 153, 424, 527, 635, 767, 836
HspAI GCGC 3 cut(s) 435, 507, 618
KasI GGCGCC 2 cut(s) 434, 506
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Ksp22I TGATCA 1 cut(s) 843
Kzo9I GATC 5 cut(s) 171, 276, 300, 783, 843
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 3 cut(s) 32, 106, 446
Lsp1109I GCAGC 5 cut(s) 67, 436, 752, 824, 833
LweI GCATC 1 cut(s) 339
MaeI CTAG 2 cut(s) 399, 726
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 2 cut(s) 341, 358
MalI GATC 5 cut(s) 173, 278, 302, 785, 845
MbiI CCGCTC 2 cut(s) 74, 124
MboI GATC 5 cut(s) 171, 276, 300, 783, 843
MboII GAAGA 6 cut(s) 29, 118, 295, 478, 583, 778
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 684
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 2 cut(s) 558, 657
MluNI TGGCCA 1 cut(s) 380
Mly113I GGCGCC 2 cut(s) 435, 507
MlyI GAGTC 3 cut(s) 240, 620, 739
MmeI TCCRAC 2 cut(s) 269, 775
MnlI CCTC 3 cut(s) 7, 45, 120
Mox20I TGGCCA 1 cut(s) 380
MroNI GCCGGC 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 482
MscI TGGCCA 1 cut(s) 380
MseI TTAA 1 cut(s) 717
MslI CAYNNNNRTG 1 cut(s) 419
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 7 cut(s) 47, 116, 168, 327, 353, 444, 705
MspR9I CCNGG 8 cut(s) 47, 83, 116, 135, 169, 353, 382, 769
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 4 cut(s) 83, 135, 382, 769
MwoI GCNNNNNNNGC 7 cut(s) 130, 139, 173, 449, 605, 818, 821
NaeI GCCGGC 1 cut(s) 328
NarI GGCGCC 2 cut(s) 435, 507
NciI CCSGG 4 cut(s) 47, 116, 169, 353
NcoI CCATGG 1 cut(s) 523
NdeII GATC 5 cut(s) 171, 276, 300, 783, 843
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 6 cut(s) 153, 424, 527, 635, 767, 836
NlaIV GGNNCC 9 cut(s) 34, 67, 108, 120, 243, 436, 508, 568, 648
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 341, 358
NspI RCATGY 1 cut(s) 767
PaeI GCATGC 1 cut(s) 767
PciSI GCTCTTC 1 cut(s) 131
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 152
PdiI GCCGGC 1 cut(s) 328
PdmI GAANNNNTTC 1 cut(s) 482
PflMI CCANNNNNTGG 1 cut(s) 806
PkrI GCNGC 6 cut(s) 57, 73, 451, 742, 814, 823
PleI GAGTC 3 cut(s) 239, 620, 738
PluTI GGCGCC 2 cut(s) 438, 510
PpsI GAGTC 3 cut(s) 239, 620, 738
Psp6I CCWGG 4 cut(s) 81, 133, 380, 767
PspFI CCCAGC 1 cut(s) 721
PspGI CCWGG 4 cut(s) 81, 133, 380, 767
PspN4I GGNNCC 9 cut(s) 34, 67, 108, 120, 243, 436, 508, 568, 648
PspPI GGNCC 5 cut(s) 165, 242, 646, 797, 849
PsuI RGATCY 1 cut(s) 783
RsaI GTAC 3 cut(s) 44, 322, 830
RsaNI GTAC 3 cut(s) 43, 321, 829
RseI CAYNNNNRTG 1 cut(s) 419
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 717
SatI GCNGC 6 cut(s) 56, 72, 450, 741, 813, 822
Sau3AI GATC 5 cut(s) 171, 276, 300, 783, 843
Sau96I GGNCC 5 cut(s) 165, 242, 646, 797, 849
SchI GAGTC 3 cut(s) 240, 620, 739
ScrFI CCNGG 8 cut(s) 47, 83, 116, 135, 169, 353, 382, 769
SduI GDGCHC 1 cut(s) 684
SfaNI GCATC 1 cut(s) 339
SfoI GGCGCC 2 cut(s) 436, 508
SinI GGWCC 2 cut(s) 242, 797
SmiMI CAYNNNNRTG 1 cut(s) 419
SphI GCATGC 1 cut(s) 767
Sse9I AATT 2 cut(s) 558, 657
SsiI CCGC 6 cut(s) 69, 72, 122, 324, 404, 597
SspDI GGCGCC 2 cut(s) 434, 506
SspMI CTAG 2 cut(s) 399, 726
StyD4I CCNGG 8 cut(s) 45, 81, 114, 133, 167, 351, 380, 767
StyI CCWWGG 5 cut(s) 9, 309, 430, 523, 534
TaaI ACNGT 7 cut(s) 214, 223, 262, 320, 500, 515, 589
TaiI ACGT 1 cut(s) 149
TaqI TCGA 2 cut(s) 129, 489
TasI AATT 2 cut(s) 558, 657
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 717
Tru9I TTAA 1 cut(s) 717
TscAI CASTG 4 cut(s) 520, 547, 607, 785
TseFI GTSAC 2 cut(s) 341, 358
TseI GCWGC 5 cut(s) 55, 449, 740, 812, 821
Tsp45I GTSAC 2 cut(s) 341, 358
TspDTI ATGAA 2 cut(s) 172, 793
TspRI CASTG 4 cut(s) 520, 547, 607, 785
Van91I CCANNNNNTGG 1 cut(s) 806
VneI GTGCAC 1 cut(s) 680
VpaK11BI GGWCC 2 cut(s) 242, 797
XagI CCTNNNNNAGG 1 cut(s) 397
XceI RCATGY 1 cut(s) 767
XmiI GTMKAC 1 cut(s) 582
XmnI GAANNNNTTC 1 cut(s) 482
XspI CTAG 2 cut(s) 399, 726
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.