Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

12220641 .. 12222468

Gene Structure 1828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAAGGCAAAGAAGAAGACGTCAATGTTGGAGCCAACAAGTTCCCAGAGAGACAGCCGATCGGTACGGCGGCTCAGACGGAGAGCAAGGACTATAAGGAACCACCACCGGCGCCGTTTTTCGAACCCGGCGAGCTCAAATCTTGGTCTTTCTACAGAGCAGGGATAGCTGAGTTCATAGCCACTTTCCTTTTCCTCTACGTCACCGTTTTGACAGTCATGGGTGTTAAGAGAGCTCCCAATATGTGTGCCTCTGTTGGAATCCAAGGCATCGCTTGGGCTTTTGGTGGCATGATCTTTGCTCTTGTTTACTGTACTGCTGGAATCTCAGGAGGACATATTAATCCGGCGGTGACTTTTGGTTTGTTCTTGGCGAGGAAGCTATCTTTAACCAGAGCTCTGTTCTACATAGTAATGCAGTGCCTTGGAGCTATATGTGGTGCTGGTGTGGTTAAAGGGTTTCAACCAGGGCTGTACCAGACGAATGGCGGTGGAGCTAATGTGGTGGCTCATGGTTACACAAAGGGTTCAGGTCTTGGTGCAGAGATTGTTGGAACTTTTGTTCTGGTTTACACTGTTTTCTCAGCTACTGATGCTAAGAGAAGTGCCAGAGACTCTCATGTCCCTATCTTGGCTCCGCTTCCAATTGGGTTTGCTGTCTTCTTGGTGCACTTGGCTACCATCCCAATTACTGGAACTGGCATTAACCCGGCCAGGAGTCTCGGAGCTGCCATCATCTACAACAAGGATCATGCTTGGGATGACCATTGGATCTTCTGGGTCGGTCCATTCATTGGTGCTGCGCTTGCTGCTCTGTACCATCAGATAGTCATCAGAGCTATTCCTTTCAAGTCCAAGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

287

Amino Acids

30.65

Weight (kDa)

8.99

Isoelectric Point (pI)

28.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	45 - 274	7.4e-85	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	112
AccB7I	CCANNNNNTGG	2 cut(s)	692, 794
AciI	CCGC	4 cut(s)	71, 350, 489, 638
AclWI	GGATC	2 cut(s)	756, 779
AcoI	YGGCCR	1 cut(s)	711
AcyI	GRCGYC	2 cut(s)	21, 113
AfaI	GTAC	4 cut(s)	67, 316, 476, 818
AfiI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
AgsI	TTSAA	2 cut(s)	464, 850
AjnI	CCWGG	2 cut(s)	466, 713
AloI	GAACNNNNNNTCC	2 cut(s)	546, 578
Alw21I	GWGCWC	4 cut(s)	138, 238, 400, 672
Alw26I	GTCTC	3 cut(s)	46, 606, 725
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	2 cut(s)	756, 779
AlwNI	CAGNNNCTG	1 cut(s)	590
AoxI	GGCC	1 cut(s)	711
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	3 cut(s)	728, 800, 809
ArsI	GACNNNNNNTTYG	2 cut(s)	346, 378
AseI	ATTAAT	1 cut(s)	342
AspLEI	GCGC	2 cut(s)	115, 805
AspS9I	GGNCC	1 cut(s)	785
AsuC2I	CCSGG	2 cut(s)	129, 710
AsuHPI	GGTGA	2 cut(s)	196, 364
AsuII	TTCGAA	1 cut(s)	123
AvaII	GGWCC	1 cut(s)	785
BaeGI	GKGCMC	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	3 cut(s)	138, 238, 400
BbsI	GAAGAC	2 cut(s)	24, 652
Bbv12I	GWGCWC	4 cut(s)	138, 238, 400, 672
BbvI	GCAGC	3 cut(s)	715, 787, 796
BccI	CCATC	3 cut(s)	689, 740, 828
BceAI	ACGGC	2 cut(s)	84, 100
BciT130I	CCWGG	2 cut(s)	468, 715
BcnI	CCSGG	2 cut(s)	129, 710
BcoDI	GTCTC	3 cut(s)	46, 606, 725
BfmI	CTRYAG	1 cut(s)	154
BfoI	RGCGCY	1 cut(s)	116
BisI	GCNGC	4 cut(s)	72, 729, 801, 810
BlsI	GCNGC	4 cut(s)	73, 730, 802, 811
Bme1390I	CCNGG	4 cut(s)	129, 468, 710, 715
Bme18I	GGWCC	1 cut(s)	785
BmgT120I	GGNCC	1 cut(s)	785
BmiI	GGNNCC	4 cut(s)	34, 102, 114, 636
BmrFI	CCNGG	4 cut(s)	129, 468, 710, 715
BmsI	GCATC	2 cut(s)	279, 583
BpiI	GAAGAC	2 cut(s)	24, 652
Bpu14I	TTCGAA	1 cut(s)	123
BpuMI	CCSGG	2 cut(s)	129, 710
BsaBI	GATNNNNATC	1 cut(s)	830
BsaHI	GRCGYC	2 cut(s)	21, 113
BsaJI	CCNNGG	3 cut(s)	265, 424, 467
BsaXI	ACNNNNNCTCC	2 cut(s)	486, 516
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 692, 794
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	697, 703
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	2 cut(s)	468, 715
BseDI	CCNNGG	3 cut(s)	265, 424, 467
BseGI	GGATG	2 cut(s)	681, 766
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BseMII	CTCAG	4 cut(s)	89, 162, 342, 597
BseNI	ACTGG	2 cut(s)	697, 703
BseSI	GKGCMC	1 cut(s)	672
BseXI	GCAGC	3 cut(s)	715, 787, 796
BsgI	GTGCAG	1 cut(s)	561
Bsh1285I	CGRYCG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	713
BshNI	GGYRCC	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	63
BsiHKAI	GWGCWC	4 cut(s)	138, 238, 400, 672
BsiSI	CCGG	4 cut(s)	110, 129, 347, 710
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BsmAI	GTCTC	3 cut(s)	46, 606, 725
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	1 cut(s)	713
Bsp119I	TTCGAA	1 cut(s)	123
Bsp1286I	GDGCHC	4 cut(s)	138, 238, 400, 672
Bsp143I	GATC	4 cut(s)	60, 294, 748, 771
BspACI	CCGC	4 cut(s)	71, 350, 489, 638
BspANI	GGCC	1 cut(s)	713
BspCNI	CTCAG	4 cut(s)	88, 163, 341, 596
BspLI	GGNNCC	4 cut(s)	34, 102, 114, 636
BspPI	GGATC	2 cut(s)	756, 779
BspT104I	TTCGAA	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	112
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	697, 703
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	265, 424, 467
BssMI	GATC	4 cut(s)	60, 294, 748, 771
BssNI	GRCGYC	2 cut(s)	21, 113
BssT1I	CCWWGG	2 cut(s)	265, 424
Bst2UI	CCWGG	2 cut(s)	468, 715
Bst4CI	ACNGT	4 cut(s)	208, 217, 314, 577
BstACI	GRCGYC	2 cut(s)	21, 113
BstBI	TTCGAA	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	134, 807
BstDEI	CTNAG	5 cut(s)	75, 171, 328, 583, 597
BstF5I	GGATG	2 cut(s)	681, 766
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	2 cut(s)	115, 805
BstKTI	GATC	4 cut(s)	63, 297, 751, 774
BstMAI	GTCTC	3 cut(s)	46, 606, 725
BstMBI	GATC	4 cut(s)	60, 294, 748, 771
BstMCI	CGRYCG	1 cut(s)	63
BstMWI	GCNNNNNNNGC	4 cut(s)	167, 593, 806, 809
BstNI	CCWGG	2 cut(s)	468, 715
BstSCI	CCNGG	4 cut(s)	127, 466, 708, 713
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	672
BstV1I	GCAGC	3 cut(s)	715, 787, 796
BstV2I	GAAGAC	2 cut(s)	24, 652
BstX2I	RGATCY	1 cut(s)	771
BstXI	CCANNNNNNTGG	1 cut(s)	485
BstYI	RGATCY	1 cut(s)	771
BsuRI	GGCC	1 cut(s)	713
BtgZI	GCGATG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	681, 766
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	2 cut(s)	425, 573
Cac8I	GCNNGC	2 cut(s)	134, 807
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	2 cut(s)	115, 805
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	1 cut(s)	785
Csp6I	GTAC	4 cut(s)	66, 315, 475, 817
CviAII	CATG	5 cut(s)	220, 292, 512, 620, 752
CviQI	GTAC	4 cut(s)	66, 315, 475, 817
DdeI	CTNAG	5 cut(s)	75, 171, 328, 583, 597
DinI	GGCGCC	1 cut(s)	114
DpnI	GATC	4 cut(s)	62, 296, 750, 773
DpnII	GATC	4 cut(s)	60, 294, 748, 771
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	711
Ecl136II	GAGCTC	3 cut(s)	136, 236, 398
Eco130I	CCWWGG	2 cut(s)	265, 424
Eco24I	GRGCYC	3 cut(s)	138, 238, 400
Eco47I	GGWCC	1 cut(s)	785
Eco53kI	GAGCTC	3 cut(s)	136, 236, 398
EcoICRI	GAGCTC	3 cut(s)	136, 236, 398
EcoRII	CCWGG	2 cut(s)	466, 713
EcoT14I	CCWWGG	2 cut(s)	265, 424
EcoT38I	GRGCYC	3 cut(s)	138, 238, 400
EgeI	GGCGCC	1 cut(s)	114
EheI	GGCGCC	1 cut(s)	114
ErhI	CCWWGG	2 cut(s)	265, 424
FaeI	CATG	5 cut(s)	223, 295, 515, 623, 755
FaqI	GGGAC	1 cut(s)	608
FatI	CATG	5 cut(s)	219, 291, 511, 619, 751
Fnu4HI	GCNGC	4 cut(s)	72, 729, 801, 810
FokI	GGATG	2 cut(s)	668, 773
FriOI	GRGCYC	3 cut(s)	138, 238, 400
Fsp4HI	GCNGC	4 cut(s)	72, 729, 801, 810
GlaI	GCGC	2 cut(s)	114, 804
GluI	GCNGC	4 cut(s)	72, 729, 801, 810
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	713
HapII	CCGG	4 cut(s)	110, 129, 347, 710
HhaI	GCGC	2 cut(s)	115, 805
Hin1I	GRCGYC	2 cut(s)	21, 113
Hin1II	CATG	5 cut(s)	223, 295, 515, 623, 755
Hin6I	GCGC	2 cut(s)	113, 803
HinP1I	GCGC	2 cut(s)	113, 803
HinfI	GANTC	4 cut(s)	261, 324, 614, 718
HpaII	CCGG	4 cut(s)	110, 129, 347, 710
HphI	GGTGA	2 cut(s)	196, 364
Hpy166II	GTNNAC	3 cut(s)	310, 571, 670
Hpy188I	TCNGA	4 cut(s)	78, 725, 825, 836
Hpy188III	TCNNGA	1 cut(s)	330
Hpy8I	GTNNAC	3 cut(s)	310, 571, 670
HpyCH4III	ACNGT	4 cut(s)	208, 217, 314, 577
HpyCH4IV	ACGT	2 cut(s)	21, 201
HpyCH4V	TGCA	3 cut(s)	418, 542, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	167, 593, 806, 809
HpyF3I	CTNAG	5 cut(s)	75, 171, 328, 583, 597
HpySE526I	ACGT	2 cut(s)	21, 201
Hsp92I	GRCGYC	2 cut(s)	21, 113
Hsp92II	CATG	5 cut(s)	223, 295, 515, 623, 755
HspAI	GCGC	2 cut(s)	113, 803
KasI	GGCGCC	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	60, 294, 748, 771
LmnI	GCTCC	6 cut(s)	32, 241, 428, 494, 640, 725
Lsp1109I	GCAGC	3 cut(s)	715, 787, 796
LweI	GCATC	2 cut(s)	279, 583
MaeII	ACGT	2 cut(s)	21, 201
MaeIII	GTNAC	3 cut(s)	202, 352, 515
MalI	GATC	4 cut(s)	62, 296, 750, 773
MboI	GATC	4 cut(s)	60, 294, 748, 771
MboII	GAAGA	4 cut(s)	26, 29, 652, 766
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	771
MhlI	GDGCHC	4 cut(s)	138, 238, 400, 672
MluCI	AATT	2 cut(s)	645, 687
Mly113I	GGCGCC	1 cut(s)	113
MlyI	GAGTC	2 cut(s)	608, 727
MmeI	TCCRAC	3 cut(s)	10, 238, 532
MnlI	CCTC	4 cut(s)	206, 262, 326, 369
MseI	TTAA	5 cut(s)	228, 342, 389, 453, 705
MslI	CAYNNNNRTG	1 cut(s)	413
MspI	CCGG	4 cut(s)	110, 129, 347, 710
MspR9I	CCNGG	4 cut(s)	129, 468, 710, 715
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	2 cut(s)	468, 715
MwoI	GCNNNNNNNGC	4 cut(s)	167, 593, 806, 809
NarI	GGCGCC	1 cut(s)	113
NciI	CCSGG	2 cut(s)	129, 710
NdeII	GATC	4 cut(s)	60, 294, 748, 771
NlaIII	CATG	5 cut(s)	223, 295, 515, 623, 755
NlaIV	GGNNCC	4 cut(s)	34, 102, 114, 636
NmuCI	GTSAC	2 cut(s)	202, 352
NspV	TTCGAA	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	261, 324
PflMI	CCANNNNNTGG	2 cut(s)	692, 794
PkrI	GCNGC	4 cut(s)	73, 730, 802, 811
Ple19I	CGATCG	1 cut(s)	63
PleI	GAGTC	2 cut(s)	608, 726
PluTI	GGCGCC	1 cut(s)	116
PpsI	GAGTC	2 cut(s)	608, 726
PshBI	ATTAAT	1 cut(s)	342
Psp124BI	GAGCTC	3 cut(s)	138, 238, 400
Psp6I	CCWGG	2 cut(s)	466, 713
PspGI	CCWGG	2 cut(s)	466, 713
PspN4I	GGNNCC	4 cut(s)	34, 102, 114, 636
PspPI	GGNCC	1 cut(s)	785
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	771
PvuI	CGATCG	1 cut(s)	63
RsaI	GTAC	4 cut(s)	67, 316, 476, 818
RsaNI	GTAC	4 cut(s)	66, 315, 475, 817
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	3 cut(s)	138, 238, 400
SaqAI	TTAA	5 cut(s)	228, 342, 389, 453, 705
SatI	GCNGC	4 cut(s)	72, 729, 801, 810
Sau3AI	GATC	4 cut(s)	60, 294, 748, 771
Sau96I	GGNCC	1 cut(s)	785
SchI	GAGTC	2 cut(s)	608, 727
ScrFI	CCNGG	4 cut(s)	129, 468, 710, 715
SduI	GDGCHC	4 cut(s)	138, 238, 400, 672
SfaNI	GCATC	2 cut(s)	279, 583
SfcI	CTRYAG	1 cut(s)	154
SfoI	GGCGCC	1 cut(s)	114
SfuI	TTCGAA	1 cut(s)	123
SgrAI	CRCCGGYG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	785
SmiMI	CAYNNNNRTG	1 cut(s)	413
Sse9I	AATT	2 cut(s)	645, 687
SsiI	CCGC	4 cut(s)	71, 350, 489, 638
SspDI	GGCGCC	1 cut(s)	112
SstI	GAGCTC	3 cut(s)	138, 238, 400
StyD4I	CCNGG	4 cut(s)	127, 466, 708, 713
StyI	CCWWGG	2 cut(s)	265, 424
TaaI	ACNGT	4 cut(s)	208, 217, 314, 577
TaiI	ACGT	2 cut(s)	24, 204
TaqI	TCGA	1 cut(s)	123
TaqII	GACCGA	1 cut(s)	773
TasI	AATT	2 cut(s)	645, 687
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	261, 324
Tru1I	TTAA	5 cut(s)	228, 342, 389, 453, 705
Tru9I	TTAA	5 cut(s)	228, 342, 389, 453, 705
TscAI	CASTG	2 cut(s)	425, 580
TseFI	GTSAC	2 cut(s)	202, 352
TseI	GCWGC	3 cut(s)	728, 800, 809
Tsp45I	GTSAC	2 cut(s)	202, 352
TspDTI	ATGAA	2 cut(s)	166, 781
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	425, 580
Van91I	CCANNNNNTGG	2 cut(s)	692, 794
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	785
VspI	ATTAAT	1 cut(s)	342
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.