Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

12783235 .. 12786363

Gene Structure 3129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14430.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGGGAAAGGAAGAGGATGTGAGGTTGGGAGCCAACAAGTTCTCAGAGAGGCAACCCATTGGGACCTCAGCTCAGACTGACAAGGACTACAAGGAGCCACCACCAGCTCCACTGTTTGAGCCTGGTGAGCTGCAGTCATGGTCTTTCTGGAGAGCTGGAATAGCTGAGTTTGTGGCCACCTTCTTGTTCCTCTACATCACTATCTTGACTGTGATGGGGGTCAACAGGGCACCAAACAAGTGTGCCTCTGTGGGTATTCAGGGCATTGCTTGGGCCTTTGGGGGTACCATCTTTGCTCTTGTTTACTCCACTGCTGGAATCTCAGGAGGTCACATAAACCCTGCTGTGACATTTGGTCTCTTCTTGGCAAGGAAGCTCTCCCTGACCAGAGCTGTGTTCTATATAGTGATGCAAACCCTTGGGGCAGTTGCTGGTGCTGCCGTGGTCAAGGGATTTGAGGGCAACACCCGGTATGAAGTGTTCGGTGGTGGAGCTAACTCAGTGAACCATGGCTATACCAAGGGTGACGGCCTTGGTGCTGAAATTGTTGGCACTTTTGTTCTGGTGTACACTGTTTTCTCCGCCACTGACGCCAAGAGAAATGCCAGAGACTCTCATGTCCCTATATTGGCTCCACTTCCAATTGGGTTTGCAGTGTTCTTGGTGCACTTGGCAACCATTCCTATCACCGGAACTGGTATCAACCCTGCTAGGAGCCTTGGAGCTGCCATCATCTACAACAAGGAGCATGCATGGGATCATCACTGGATCTTCTGGGTCGGACCATTCATTGGAGCTGCACTTGCTGCCCTCTACCATCAGATAGTCATCAGAGCCATTCCATTCAAGACTAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

288

Amino Acids

30.87

Weight (kDa)

8.93

Isoelectric Point (pI)

25.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	44 - 274	3.5e-82	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc65I	GGTACC	1 cut(s)	287
AccB1I	GGYRCC	2 cut(s)	232, 287
AccB7I	CCANNNNNTGG	1 cut(s)	794
AciI	CCGC	1 cut(s)	585
AclWI	GGATC	2 cut(s)	768, 779
AcoI	YGGCCR	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	594
AfaI	GTAC	2 cut(s)	289, 572
AfiI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
AgsI	TTSAA	1 cut(s)	850
AhdI	GACNNNNNGTC	1 cut(s)	357
AjnI	CCWGG	1 cut(s)	124
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	2 cut(s)	365, 606
Alw44I	GTGCAC	1 cut(s)	668
AlwI	GGATC	2 cut(s)	768, 779
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	177, 276, 532
ApaLI	GTGCAC	1 cut(s)	668
ApeKI	GCWGC	5 cut(s)	133, 440, 728, 800, 809
Asp718I	GGTACC	1 cut(s)	287
AspS9I	GGNCC	3 cut(s)	66, 276, 785
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	3 cut(s)	140, 539, 682
AvaII	GGWCC	2 cut(s)	66, 785
BaeGI	GKGCMC	2 cut(s)	235, 672
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	232, 287
Bbv12I	GWGCWC	1 cut(s)	672
BbvCI	CCTCAGC	1 cut(s)	70
BbvI	GCAGC	5 cut(s)	120, 427, 715, 787, 796
BccI	CCATC	4 cut(s)	211, 299, 740, 828
BceAI	ACGGC	2 cut(s)	428, 547
BciT130I	CCWGG	1 cut(s)	126
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	2 cut(s)	365, 606
BfaI	CTAG	2 cut(s)	714, 855
BfmI	CTRYAG	1 cut(s)	134
BisI	GCNGC	5 cut(s)	134, 441, 729, 801, 810
BlsI	GCNGC	5 cut(s)	135, 442, 730, 802, 811
Bme1390I	CCNGG	2 cut(s)	126, 472
Bme18I	GGWCC	2 cut(s)	66, 785
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmgT120I	GGNCC	3 cut(s)	66, 276, 785
BmiI	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
BmrFI	CCNGG	2 cut(s)	126, 472
BmsI	GCATC	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	172
Bpu10I	CCTNAGC	1 cut(s)	70
BpuMI	CCSGG	1 cut(s)	472
BsaBI	GATNNNNATC	1 cut(s)	830
BsaHI	GRCGYC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	365
BsaJI	CCNNGG	6 cut(s)	421, 444, 511, 522, 535, 721
BsaWI	WCCGGW	1 cut(s)	692
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 692, 794
Bse1I	ACTGG	2 cut(s)	703, 773
Bse3DI	GCAATG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	830
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	6 cut(s)	421, 444, 511, 522, 535, 721
BseGI	GGATG	1 cut(s)	25
BseJI	GATNNNNATC	1 cut(s)	830
BseLI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	6 cut(s)	60, 84, 89, 159, 339, 516
BseNI	ACTGG	2 cut(s)	703, 773
BseSI	GKGCMC	2 cut(s)	235, 672
BseXI	GCAGC	5 cut(s)	120, 427, 715, 787, 796
BsgI	GTGCAG	1 cut(s)	786
BshFI	GGCC	3 cut(s)	179, 278, 534
BshNI	GGYRCC	2 cut(s)	232, 287
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	2 cut(s)	472, 693
BslFI	GGGAC	2 cut(s)	79, 608
BslI	CCNNNNNNNGG	3 cut(s)	631, 692, 794
BsmAI	GTCTC	2 cut(s)	365, 606
BsmFI	GGGAC	2 cut(s)	79, 608
BsnI	GGCC	3 cut(s)	179, 278, 534
Bso31I	GGTCTC	1 cut(s)	365
Bsp1286I	GDGCHC	2 cut(s)	235, 672
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	2 cut(s)	760, 771
Bsp19I	CCATGG	1 cut(s)	511
BspACI	CCGC	1 cut(s)	585
BspANI	GGCC	3 cut(s)	179, 278, 534
BspCNI	CTCAG	6 cut(s)	59, 83, 88, 160, 338, 515
BspLI	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
BspMAI	CTGCAG	1 cut(s)	138
BspPI	GGATC	2 cut(s)	768, 779
BspT107I	GGYRCC	2 cut(s)	232, 287
BspTNI	GGTCTC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	2 cut(s)	703, 773
BssECI	CCNNGG	6 cut(s)	421, 444, 511, 522, 535, 721
BssMI	GATC	2 cut(s)	760, 771
BssNI	GRCGYC	1 cut(s)	594
BssT1I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	3 cut(s)	117, 214, 577
Bst6I	CTCTTC	2 cut(s)	9, 368
BstACI	GRCGYC	1 cut(s)	594
BstAPI	GCANNNNNTGC	1 cut(s)	809
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	1 cut(s)	753
BstDEI	CTNAG	6 cut(s)	46, 70, 75, 168, 325, 502
BstDSI	CCRYGG	2 cut(s)	444, 511
BstF5I	GGATG	1 cut(s)	25
BstKTI	GATC	2 cut(s)	763, 774
BstMAI	GTCTC	2 cut(s)	365, 606
BstMBI	GATC	2 cut(s)	760, 771
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	124, 470
BstSFI	CTRYAG	1 cut(s)	134
BstSLI	GKGCMC	2 cut(s)	235, 672
BstV1I	GCAGC	5 cut(s)	120, 427, 715, 787, 796
BstX2I	RGATCY	1 cut(s)	771
BstYI	RGATCY	1 cut(s)	771
BsuRI	GGCC	3 cut(s)	179, 278, 534
BtgI	CCRYGG	2 cut(s)	444, 511
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	2 cut(s)	312, 663
BtsIMutI	CAGTG	7 cut(s)	113, 312, 510, 573, 588, 663, 766
Cac8I	GCNNGC	1 cut(s)	753
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	3 cut(s)	66, 276, 785
CseI	GACGC	1 cut(s)	602
Csp6I	GTAC	2 cut(s)	288, 571
CviAII	CATG	5 cut(s)	141, 512, 620, 752, 756
CviQI	GTAC	2 cut(s)	288, 571
DdeI	CTNAG	6 cut(s)	46, 70, 75, 168, 325, 502
DpnI	GATC	2 cut(s)	762, 773
DpnII	GATC	2 cut(s)	760, 771
DrdI	GACNNNNNNGTC	1 cut(s)	620
DriI	GACNNNNNGTC	1 cut(s)	357
DseDI	GACNNNNNNGTC	1 cut(s)	620
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	2 cut(s)	9, 368
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	2 cut(s)	9, 368
EciI	GGCGGA	1 cut(s)	574
Eco130I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
Eco31I	GGTCTC	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	66, 785
EcoO109I	RGGNCCY	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	124
EcoT14I	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
EcoT22I	ATGCAT	1 cut(s)	757
ErhI	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
FaeI	CATG	5 cut(s)	144, 515, 623, 755, 759
FaqI	GGGAC	2 cut(s)	79, 608
FatI	CATG	5 cut(s)	140, 511, 619, 751, 755
Fnu4HI	GCNGC	5 cut(s)	134, 441, 729, 801, 810
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	5 cut(s)	134, 441, 729, 801, 810
FspBI	CTAG	2 cut(s)	714, 855
GluI	GCNGC	5 cut(s)	134, 441, 729, 801, 810
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	3 cut(s)	179, 278, 534
HapII	CCGG	2 cut(s)	472, 693
HgaI	GACGC	1 cut(s)	602
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	5 cut(s)	144, 515, 623, 755, 759
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	2 cut(s)	321, 614
HpaII	CCGG	2 cut(s)	472, 693
HphI	GGTGA	3 cut(s)	140, 539, 682
Hpy166II	GTNNAC	6 cut(s)	226, 307, 508, 571, 573, 670
Hpy188I	TCNGA	5 cut(s)	49, 78, 785, 825, 836
Hpy188III	TCNNGA	4 cut(s)	151, 208, 327, 850
Hpy8I	GTNNAC	6 cut(s)	226, 307, 508, 571, 573, 670
HpyAV	CCTTC	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	117, 214, 577
HpyCH4V	TGCA	6 cut(s)	136, 415, 656, 670, 755, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
HpyF3I	CTNAG	6 cut(s)	46, 70, 75, 168, 325, 502
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	5 cut(s)	144, 515, 623, 755, 759
KpnI	GGTACC	1 cut(s)	291
Kzo9I	GATC	2 cut(s)	760, 771
LmnI	GCTCC	9 cut(s)	32, 97, 115, 494, 640, 717, 725, 748, 797
Lsp1109I	GCAGC	5 cut(s)	120, 427, 715, 787, 796
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	714, 855
MaeIII	GTNAC	3 cut(s)	332, 349, 527
MalI	GATC	2 cut(s)	762, 773
MboI	GATC	2 cut(s)	760, 771
MboII	GAAGA	3 cut(s)	26, 355, 766
MfeI	CAATTG	1 cut(s)	645
MflI	RGATCY	1 cut(s)	771
MhlI	GDGCHC	2 cut(s)	235, 672
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	2 cut(s)	546, 645
MluNI	TGGCCA	1 cut(s)	179
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	763
MnlI	CCTC	9 cut(s)	10, 18, 45, 79, 203, 259, 323, 454, 824
Mox20I	TGGCCA	1 cut(s)	179
Mph1103I	ATGCAT	1 cut(s)	757
MscI	TGGCCA	1 cut(s)	179
Msp20I	TGGCCA	1 cut(s)	179
MspI	CCGG	2 cut(s)	472, 693
MspR9I	CCNGG	2 cut(s)	126, 472
MunI	CAATTG	1 cut(s)	645
MvaI	CCWGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	6 cut(s)	130, 164, 440, 593, 806, 809
NciI	CCSGG	1 cut(s)	472
NcoI	CCATGG	1 cut(s)	511
NdeII	GATC	2 cut(s)	760, 771
NlaIII	CATG	5 cut(s)	144, 515, 623, 755, 759
NlaIV	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
NmuCI	GTSAC	3 cut(s)	332, 349, 527
NsiI	ATGCAT	1 cut(s)	757
NspI	RCATGY	1 cut(s)	755
PaeI	GCATGC	1 cut(s)	755
PfeI	GAWTC	1 cut(s)	321
PflMI	CCANNNNNTGG	1 cut(s)	794
PkrI	GCNGC	5 cut(s)	135, 442, 730, 802, 811
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PpuMI	RGGWCCY	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	7 cut(s)	34, 67, 99, 234, 289, 636, 719
PspPI	GGNCC	3 cut(s)	66, 276, 785
PspPPI	RGGWCCY	1 cut(s)	66
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PstI	CTGCAG	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	771
RsaI	GTAC	2 cut(s)	289, 572
RsaNI	GTAC	2 cut(s)	288, 571
SatI	GCNGC	5 cut(s)	134, 441, 729, 801, 810
Sau3AI	GATC	2 cut(s)	760, 771
Sau96I	GGNCC	3 cut(s)	66, 276, 785
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	2 cut(s)	126, 472
SduI	GDGCHC	2 cut(s)	235, 672
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	134
SinI	GGWCC	2 cut(s)	66, 785
SphI	GCATGC	1 cut(s)	755
Sse9I	AATT	2 cut(s)	546, 645
SsiI	CCGC	1 cut(s)	585
SspMI	CTAG	2 cut(s)	714, 855
StyD4I	CCNGG	2 cut(s)	124, 470
StyI	CCWWGG	5 cut(s)	421, 511, 522, 535, 721
TaaI	ACNGT	3 cut(s)	117, 214, 577
TasI	AATT	2 cut(s)	546, 645
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	7 cut(s)	120, 319, 510, 580, 595, 663, 773
TseFI	GTSAC	3 cut(s)	332, 349, 527
TseI	GCWGC	5 cut(s)	133, 440, 728, 800, 809
Tsp45I	GTSAC	3 cut(s)	332, 349, 527
TspDTI	ATGAA	2 cut(s)	492, 781
TspRI	CASTG	7 cut(s)	120, 319, 510, 580, 595, 663, 773
Van91I	CCANNNNNTGG	1 cut(s)	794
VneI	GTGCAC	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	66, 785
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	2 cut(s)	714, 855
Zsp2I	ATGCAT	1 cut(s)	757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.