Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001159

Physical Location & Seq

Genomic Coordinates Forward (+)

2786999 .. 2789632

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0039600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCTTCTTCATCAGGTACGCTTAGTGCTAAAGAAGCATTTAATTTCTTAAGGCCTAAACTTGCTTCAATTGAGTGGTGTAAATTAATTTGGTGCAAGTATGTTGCTCCACGTATGTCTCTTTTGGTCTGGAAAGTATTGCGAGGCCAGGTCCTTTGTGATGATTTTTTGCAAAAATGTGGAGTCTCTCTTGGTTCAATTTGCTTGCTTTGTAGGAAGCATGTTGAGTCATTAGAGCACATATTTCTTAATTGTCCTTTTGCTGCATCAATATGGACTTGCATGATGGAAAGATTTGAATTGGGTGGTCTCCCTGGCACATTATTGGAGCTTTTGTTTAAAGGCCATAGAGTTGGTCGCAGCCCTCAACTAAAAGAGTTATGGATAGATTGTTTTTGCTCATCTCTGTGGTTCATCTGGCGAATGAGAAATAGGTGCAAGTTTGAAGGTATTGTGCCCAATGCTATGCATGCTTGTAGGATGATCTTAGGTTATGTAAATACTTCTGGCCGCATAGCCATTGGTTGCATGTTCAACTCTATCCAGGATCTTTGTGTAGTTAAGAGATTTGGGGTTCCTTGTAAACCTCGTCGTGCACCCCGTATCATAGAGGTAAATTGGTTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

209

Amino Acids

23.91

Weight (kDa)

9.35

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	9 - 92	2.4e-21	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001159)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01620 AT1G01620 AT2G45960 AT2G45960 AT2G45960 AT3G61430 AT3G61430 AT4G00430 AT4G00430 AT4G23400
fragaria_vesca	FvH4_5g02630 FvH4_7g14430 FvH4_7g24120 FvH4_7g24120
malus_domestica	MD01G1062800.v1.1 MD01G1148400.v1.1 MD07G1215400.v1.1 MD14G1106500.v1.1
prunus_persica	Prupe.2G171200_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.2G247300_v2.0.a1 Prupe.5G101400_v2.0.a1
pyrus_communis	pycom01g09330 pycom14g10150
rosa_chinensis	RchiOBHm_Chr1g0355771 RchiOBHm_Chr1g0369541 RchiOBHm_Chr7g0197451
rosa_laevigata	RLG00000003939 RLG00000027120 RLG00000028128
rosa_multiflora	Rmu_co8411161.1_g000001 Rmu_sc0001154.1_g000001 Rmu_sc0002284.1_g000001 Rmu_sc0004705.1_g000036 Rmu_ssc0000484.1_g000029
rosa_roxburghii	Rroxscaffold_3G00258450 Rroxscaffold_4G00287540 Rroxscaffold_4G00299990
rosa_rugosa	Rorug01G0248100 Rorug01G0351100 Rorug07G0039600
rosa_samantha	Rh1AG261100 Rh1AG359300 Rh1BG230600 Rh1BG323000 Rh1CG243700 Rh1CG336300 Rh1DG258600 Rh1DG353800 Rh7AG164800 Rh7BG167000 Rh7CG173300 Rh7DG166200
rosa_wichuraiana	Rw1G023010 Rw1G031660 Rw7G014370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	511
AclWI	GGATC	1 cut(s)	555
AcoI	YGGCCR	1 cut(s)	508
AfaI	GTAC	1 cut(s)	19
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	5 cut(s)	69, 198, 299, 446, 535
AjnI	CCWGG	3 cut(s)	147, 313, 543
AluBI	AGCT	1 cut(s)	331
AluI	AGCT	1 cut(s)	331
Alw21I	GWGCWC	2 cut(s)	240, 598
Alw26I	GTCTC	3 cut(s)	123, 190, 314
Alw44I	GTGCAC	1 cut(s)	594
AlwI	GGATC	1 cut(s)	555
AoxI	GGCC	4 cut(s)	53, 145, 343, 508
ApaLI	GTGCAC	1 cut(s)	594
ApeKI	GCWGC	2 cut(s)	263, 360
AseI	ATTAAT	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	2 cut(s)	459, 598
Bbv12I	GWGCWC	2 cut(s)	240, 598
BbvI	GCAGC	2 cut(s)	250, 372
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	3 cut(s)	149, 315, 545
BcoDI	GTCTC	3 cut(s)	123, 190, 314
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	3 cut(s)	264, 361, 511
BlsI	GCNGC	3 cut(s)	265, 362, 512
Bme1390I	CCNGG	3 cut(s)	149, 315, 545
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	576
BmrFI	CCNGG	3 cut(s)	149, 315, 545
BmsI	GCATC	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
BseBI	CCWGG	3 cut(s)	149, 315, 545
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	1 cut(s)	486
BseSI	GKGCMC	2 cut(s)	459, 598
BseXI	GCAGC	2 cut(s)	250, 372
BshFI	GGCC	4 cut(s)	55, 147, 345, 510
BsiHKAI	GWGCWC	2 cut(s)	240, 598
BsmAI	GTCTC	3 cut(s)	123, 190, 314
BsnI	GGCC	4 cut(s)	55, 147, 345, 510
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	3 cut(s)	240, 459, 598
Bsp143I	GATC	2 cut(s)	483, 547
BspACI	CCGC	1 cut(s)	511
BspANI	GGCC	4 cut(s)	55, 147, 345, 510
BspLI	GGNNCC	1 cut(s)	576
BspPI	GGATC	1 cut(s)	555
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	2 cut(s)	483, 547
Bst2UI	CCWGG	3 cut(s)	149, 315, 545
BstAFI	CTTAAG	1 cut(s)	49
BstBAI	YACGTR	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	206, 471
BstDEI	CTNAG	2 cut(s)	23, 487
BstF5I	GGATG	1 cut(s)	486
BstKTI	GATC	2 cut(s)	486, 550
BstMAI	GTCTC	3 cut(s)	123, 190, 314
BstMBI	GATC	2 cut(s)	483, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 470
BstNI	CCWGG	3 cut(s)	149, 315, 545
BstNSI	RCATGY	3 cut(s)	224, 473, 532
BstSCI	CCNGG	3 cut(s)	147, 313, 543
BstSLI	GKGCMC	2 cut(s)	459, 598
BstV1I	GCAGC	2 cut(s)	250, 372
BstX2I	RGATCY	1 cut(s)	547
BstXI	CCANNNNNNTGG	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	547
BsuRI	GGCC	4 cut(s)	55, 147, 345, 510
BtsCI	GGATG	1 cut(s)	486
Cac8I	GCNNGC	2 cut(s)	206, 471
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	18
CviAII	CATG	4 cut(s)	221, 283, 470, 529
CviJI	RGCY	7 cut(s)	55, 147, 331, 345, 363, 510, 518
CviKI_1	RGCY	7 cut(s)	55, 147, 331, 345, 363, 510, 518
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	2 cut(s)	23, 487
DpnI	GATC	2 cut(s)	485, 549
DpnII	GATC	2 cut(s)	483, 547
DraI	TTTAAA	1 cut(s)	340
EaeI	YGGCCR	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	147, 313, 543
EcoT22I	ATGCAT	1 cut(s)	471
FaeI	CATG	4 cut(s)	224, 286, 473, 532
FatI	CATG	4 cut(s)	220, 282, 469, 528
Fnu4HI	GCNGC	3 cut(s)	264, 361, 511
FokI	GGATG	1 cut(s)	493
Fsp4HI	GCNGC	3 cut(s)	264, 361, 511
GluI	GCNGC	3 cut(s)	264, 361, 511
HaeIII	GGCC	4 cut(s)	55, 147, 345, 510
Hin1II	CATG	4 cut(s)	224, 286, 473, 532
HinfI	GANTC	2 cut(s)	183, 227
Hpy166II	GTNNAC	2 cut(s)	584, 596
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	2 cut(s)	584, 596
Hpy99I	CGWCG	1 cut(s)	594
HpyAV	CCTTC	2 cut(s)	15, 440
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	8 cut(s)	96, 172, 266, 282, 438, 469, 528, 596
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 470
HpyF3I	CTNAG	2 cut(s)	23, 487
HpySE526I	ACGT	1 cut(s)	112
Hsp92II	CATG	4 cut(s)	224, 286, 473, 532
Kzo9I	GATC	2 cut(s)	483, 547
LmnI	GCTCC	2 cut(s)	112, 328
LpnPI	CCDG	9 cut(s)	115, 134, 161, 300, 327, 403, 492, 530, 557
Lsp1109I	GCAGC	2 cut(s)	250, 372
LweI	GCATC	1 cut(s)	275
MaeII	ACGT	1 cut(s)	112
MalI	GATC	2 cut(s)	485, 549
MboI	GATC	2 cut(s)	483, 547
MfeI	CAATTG	1 cut(s)	69
MflI	RGATCY	1 cut(s)	547
MhlI	GDGCHC	3 cut(s)	240, 459, 598
MluCI	AATT	8 cut(s)	43, 69, 83, 87, 198, 250, 299, 616
MlyI	GAGTC	2 cut(s)	192, 236
MnlI	CCTC	4 cut(s)	137, 375, 597, 604
Mph1103I	ATGCAT	1 cut(s)	471
MseI	TTAA	7 cut(s)	42, 50, 86, 249, 339, 561, 628
MslI	CAYNNNNRTG	2 cut(s)	271, 406
MspCI	CTTAAG	1 cut(s)	49
MspR9I	CCNGG	3 cut(s)	149, 315, 545
MunI	CAATTG	1 cut(s)	69
MvaI	CCWGG	3 cut(s)	149, 315, 545
MwoI	GCNNNNNNNGC	2 cut(s)	35, 470
NdeII	GATC	2 cut(s)	483, 547
NlaIII	CATG	4 cut(s)	224, 286, 473, 532
NlaIV	GGNNCC	1 cut(s)	576
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	3 cut(s)	224, 473, 532
PaeI	GCATGC	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	55
PcsI	WCGNNNNNNNCGW	1 cut(s)	598
PfoI	TCCNGGA	1 cut(s)	543
PkrI	GCNGC	3 cut(s)	265, 362, 512
PleI	GAGTC	2 cut(s)	191, 235
PpsI	GAGTC	2 cut(s)	191, 235
Ppu21I	YACGTR	1 cut(s)	113
PpuMI	RGGWCCY	1 cut(s)	151
PshBI	ATTAAT	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	151
Psp6I	CCWGG	3 cut(s)	147, 313, 543
PspGI	CCWGG	3 cut(s)	147, 313, 543
PspN4I	GGNNCC	1 cut(s)	576
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	547
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	2 cut(s)	271, 406
SaqAI	TTAA	7 cut(s)	42, 50, 86, 249, 339, 561, 628
SatI	GCNGC	3 cut(s)	264, 361, 511
Sau3AI	GATC	2 cut(s)	483, 547
Sau96I	GGNCC	1 cut(s)	151
SchI	GAGTC	2 cut(s)	192, 236
ScrFI	CCNGG	3 cut(s)	149, 315, 545
SduI	GDGCHC	3 cut(s)	240, 459, 598
SetI	ASST	9 cut(s)	19, 115, 153, 333, 437, 451, 493, 589, 615
SfaNI	GCATC	1 cut(s)	275
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	2 cut(s)	271, 406
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	8 cut(s)	43, 69, 83, 87, 198, 250, 299, 616
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	1 cut(s)	511
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	3 cut(s)	147, 313, 543
TaiI	ACGT	1 cut(s)	115
TasI	AATT	8 cut(s)	43, 69, 83, 87, 198, 250, 299, 616
TauI	GCSGC	1 cut(s)	513
Tru1I	TTAA	7 cut(s)	42, 50, 86, 249, 339, 561, 628
Tru9I	TTAA	7 cut(s)	42, 50, 86, 249, 339, 561, 628
TseI	GCWGC	2 cut(s)	263, 360
TspDTI	ATGAA	1 cut(s)	403
Vha464I	CTTAAG	1 cut(s)	49
VneI	GTGCAC	1 cut(s)	594
VpaK11BI	GGWCC	1 cut(s)	151
VspI	ATTAAT	1 cut(s)	86
XceI	RCATGY	3 cut(s)	224, 473, 532
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.