Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016615

Physical Location & Seq

Genomic Coordinates Reverse (-)

59329813 .. 59333347

Gene Structure 3535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGGTGACAGAGCGCACGGTGCTACAGTTCTCGCCGACCTTGACGGCGAAGGTTCATCCTCTCGTCATCTTCAACATCTGCGACTGCTACGTCCGCCGCCCTGACCAGACCGAGCGCGTCATCGGCACGCTCCTCGGCTCCGTCCTCCCCGATGGCACAGTCGACATCAGAAACTCCTACGCCGTTCCTCACAGCGAGTTTTCCGAGCAGGTTGCTTTAGACATTGATTACCATCACAATATGCTGATATCTCAGCAAAAGGTGAATCCTAAGGAAGTCATTGTTGGATGGTACTCAACCGGTCTTGGAGTTACTGGTTCTAGTGTATTAATCCATGATTTCTATTCTGGAGAGGTTCCCAACCCAATTCATTTGACAGTTGATACGGGATTCAGTAATGGAGAGGGTACAGTAAAAGCATATGTTTCGTCAAATTTGTCTCTGTCTCATGGAGAACAACAGCAAGCAGGAGGTCGACAAGCAGGAGATCGTCAACTTCCACTTGCAGCACAGTTTCAAGAAATTCCTCTTGATCTTCGCATGGTTGAAGCCGAGCGAGTTGGATTTGATATTCTTAAGACAACAATGACTGACAAGCTTCCAACTGATTTAGAAGGAATGGAAGCCTCAATGGAGCGGCTGCTAGCTTTAATCGATGACGTGTATAAATATGTTGACAGTGTTGACGAAGGACGTGTTGCACCAGATAACAATGTAGGGAGGTTTCTATGGGATGCTGTAGAATCTCTTCCAAAATTGTCTCCTGCAGTTTTTGATAAGCTAGTGAATGACAGCTTGCAGGACAATATGCTCTTGCTATATTTGTCGAGTATCACCAGGACACAGCTTACCCTAGCTGAAAAGTTGAACACAGCTGCTCAGGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

297

Amino Acids

32.78

Weight (kDa)

4.75

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	15 - 121	1.7e-26	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	184 - 291	7e-30	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39990
fragaria_vesca	FvH4_7g24110
malus_domestica	MD01G1148100.v1.1 MD07G1215300.v1.1
prunus_persica	Prupe.2G247200_v2.0.a1
pyrus_communis	pycom01g16690 pycom07g19760
rosa_chinensis	RchiOBHm_Chr1g0369531
rosa_laevigata	RLG00000027121
rosa_roxburghii	Rroxscaffold_4G00287550
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1BG322900 Rh1DG353700
rosa_wichuraiana	Rw1G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	640
AccI	GTMKAC	2 cut(s)	165, 478
AccII	CGCG	1 cut(s)	120
AciI	CCGC	4 cut(s)	5, 97, 100, 640
AcsI	RAATTY	2 cut(s)	436, 525
AfaI	GTAC	2 cut(s)	296, 412
AflII	CTTAAG	1 cut(s)	578
AflIII	ACRYGT	2 cut(s)	663, 697
AgeI	ACCGGT	1 cut(s)	302
AgsI	TTSAA	4 cut(s)	76, 521, 551, 871
AjiI	CACGTC	2 cut(s)	664, 698
AjnI	CCWGG	1 cut(s)	839
AjuI	GAANNNNNNNTTGG	2 cut(s)	270, 302
AluBI	AGCT	7 cut(s)	601, 650, 784, 798, 850, 860, 878
AluI	AGCT	7 cut(s)	601, 650, 784, 798, 850, 860, 878
Alw26I	GTCTC	3 cut(s)	447, 453, 768
AlwNI	CAGNNNCTG	1 cut(s)	889
ApeKI	GCWGC	3 cut(s)	509, 643, 878
ApoI	RAATTY	2 cut(s)	436, 525
AseI	ATTAAT	1 cut(s)	332
AsiGI	ACCGGT	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	750
AspLEI	GCGC	2 cut(s)	18, 120
AsuHPI	GGTGA	3 cut(s)	19, 277, 829
AsuNHI	GCTAGC	1 cut(s)	646
AxyI	CCTNAGG	1 cut(s)	273
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbvI	GCAGC	3 cut(s)	521, 630, 865
BccI	CCATC	3 cut(s)	149, 243, 285
BceAI	ACGGC	2 cut(s)	63, 170
BcgI	CGANNNNNNTGC	6 cut(s)	118, 152, 197, 231, 411, 445
BciT130I	CCWGG	1 cut(s)	841
BcoDI	GTCTC	3 cut(s)	447, 453, 768
BfaI	CTAG	4 cut(s)	324, 647, 785, 857
BfmI	CTRYAG	3 cut(s)	26, 741, 768
BfrI	CTTAAG	1 cut(s)	578
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	5 cut(s)	100, 510, 641, 644, 879
BlsI	GCNGC	5 cut(s)	101, 511, 642, 645, 880
Bme1390I	CCNGG	1 cut(s)	841
BmgBI	CACGTC	2 cut(s)	664, 698
BmiI	GGNNCC	2 cut(s)	142, 360
BmrFI	CCNGG	1 cut(s)	841
BmsI	GCATC	1 cut(s)	727
BmtI	GCTAGC	1 cut(s)	650
BpmI	CTGGAG	1 cut(s)	372
Bpu10I	CCTNAGC	1 cut(s)	882
Bsa29I	ATCGAT	1 cut(s)	657
BsaBI	GATNNNNATC	1 cut(s)	234
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	302
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	322
Bse21I	CCTNAGG	1 cut(s)	273
Bse8I	GATNNNNATC	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	841
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	3 cut(s)	58, 296, 742
BseJI	GATNNNNATC	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	322
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	521, 630, 865
Bsh1236I	CGCG	1 cut(s)	120
BshTI	ACCGGT	1 cut(s)	302
BshVI	ATCGAT	1 cut(s)	657
BsiSI	CCGG	1 cut(s)	303
BsmAI	GTCTC	3 cut(s)	447, 453, 768
Bsp143I	GATC	2 cut(s)	490, 535
BspACI	CCGC	4 cut(s)	5, 97, 100, 640
BspCNI	CTCAG	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	657
BspFNI	CGCG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	142, 360
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	202
BspOI	GCTAGC	1 cut(s)	650
BspTI	CTTAAG	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	640
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	322
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	490, 535
Bst2UI	CCWGG	1 cut(s)	841
Bst4CI	ACNGT	7 cut(s)	22, 30, 163, 382, 415, 516, 683
Bst6I	CTCTTC	1 cut(s)	756
BstAFI	CTTAAG	1 cut(s)	578
BstC8I	GCNNGC	4 cut(s)	131, 468, 648, 800
BstDEI	CTNAG	3 cut(s)	255, 273, 882
BstF5I	GGATG	3 cut(s)	58, 296, 742
BstFNI	CGCG	1 cut(s)	120
BstHHI	GCGC	2 cut(s)	18, 120
BstKTI	GATC	2 cut(s)	493, 538
BstMAI	GTCTC	3 cut(s)	447, 453, 768
BstMBI	GATC	2 cut(s)	490, 535
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 96, 126
BstNI	CCWGG	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	3 cut(s)	26, 741, 768
BstUI	CGCG	1 cut(s)	120
BstV1I	GCAGC	3 cut(s)	521, 630, 865
Bsu15I	ATCGAT	1 cut(s)	657
Bsu36I	CCTNAGG	1 cut(s)	273
BsuTUI	ATCGAT	1 cut(s)	657
BtrI	CACGTC	2 cut(s)	664, 698
BtsCI	GGATG	3 cut(s)	58, 296, 742
BtsIMutI	CAGTG	1 cut(s)	688
BveI	ACCTGC	1 cut(s)	202
Cac8I	GCNNGC	4 cut(s)	131, 468, 648, 800
CaiI	CAGNNNCTG	1 cut(s)	889
CfoI	GCGC	2 cut(s)	18, 120
Cfr10I	RCCGGY	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	657
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	2 cut(s)	295, 411
CspAI	ACCGGT	1 cut(s)	302
CviAII	CATG	3 cut(s)	338, 452, 544
CviQI	GTAC	2 cut(s)	295, 411
DdeI	CTNAG	3 cut(s)	255, 273, 882
DpnI	GATC	2 cut(s)	492, 537
DpnII	GATC	2 cut(s)	490, 535
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
EciI	GGCGGA	1 cut(s)	86
Eco32I	GATATC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	839
EcoRV	GATATC	1 cut(s)	252
FaeI	CATG	3 cut(s)	341, 455, 547
FatI	CATG	3 cut(s)	337, 451, 543
FauNDI	CATATG	1 cut(s)	424
FblI	GTMKAC	2 cut(s)	165, 478
Fnu4HI	GCNGC	5 cut(s)	100, 510, 641, 644, 879
FokI	GGATG	3 cut(s)	45, 303, 749
Fsp4HI	GCNGC	5 cut(s)	100, 510, 641, 644, 879
FspBI	CTAG	4 cut(s)	324, 647, 785, 857
GlaI	GCGC	2 cut(s)	17, 119
GluI	GCNGC	5 cut(s)	100, 510, 641, 644, 879
GsuI	CTGGAG	1 cut(s)	372
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	2 cut(s)	18, 120
Hin1II	CATG	3 cut(s)	341, 455, 547
Hin6I	GCGC	2 cut(s)	16, 118
HinP1I	GCGC	2 cut(s)	16, 118
HincII	GTYRAC	5 cut(s)	166, 479, 497, 679, 688
HindII	GTYRAC	5 cut(s)	166, 479, 497, 679, 688
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	3 cut(s)	268, 393, 746
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	3 cut(s)	19, 277, 829
Hpy166II	GTNNAC	5 cut(s)	166, 479, 497, 679, 688
Hpy188I	TCNGA	2 cut(s)	173, 208
Hpy188III	TCNNGA	3 cut(s)	351, 521, 533
Hpy8I	GTNNAC	5 cut(s)	166, 479, 497, 679, 688
HpyAV	CCTTC	3 cut(s)	46, 611, 686
HpyCH4III	ACNGT	7 cut(s)	22, 30, 163, 382, 415, 516, 683
HpyCH4IV	ACGT	3 cut(s)	93, 663, 697
HpyCH4V	TGCA	4 cut(s)	509, 704, 770, 802
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 96, 126
HpyF3I	CTNAG	3 cut(s)	255, 273, 882
HpySE526I	ACGT	3 cut(s)	93, 663, 697
Hsp92II	CATG	3 cut(s)	341, 455, 547
HspAI	GCGC	2 cut(s)	16, 118
Kzo9I	GATC	2 cut(s)	490, 535
LmnI	GCTCC	3 cut(s)	138, 146, 637
Lsp1109I	GCAGC	3 cut(s)	521, 630, 865
LweI	GCATC	1 cut(s)	727
MaeI	CTAG	4 cut(s)	324, 647, 785, 857
MaeII	ACGT	3 cut(s)	93, 663, 697
MaeIII	GTNAC	2 cut(s)	7, 313
MalI	GATC	2 cut(s)	492, 537
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	2 cut(s)	490, 535
MboII	GAAGA	3 cut(s)	64, 530, 743
MluCI	AATT	4 cut(s)	369, 436, 525, 758
MmeI	TCCRAC	3 cut(s)	268, 544, 629
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	332, 579, 653
MspA1I	CMGCKG	1 cut(s)	878
MspCI	CTTAAG	1 cut(s)	578
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	841
MvaI	CCWGG	1 cut(s)	841
MvnI	CGCG	1 cut(s)	120
MwoI	GCNNNNNNNGC	3 cut(s)	22, 96, 126
NdeI	CATATG	1 cut(s)	424
NdeII	GATC	2 cut(s)	490, 535
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	3 cut(s)	341, 455, 547
NlaIV	GGNNCC	2 cut(s)	142, 360
NmeAIII	GCCGAG	2 cut(s)	117, 580
NmuCI	GTSAC	1 cut(s)	7
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	268, 393, 746
PinAI	ACCGGT	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	101, 511, 642, 645, 880
PshBI	ATTAAT	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	839
PspN4I	GGNNCC	2 cut(s)	142, 360
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	889
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	2 cut(s)	296, 412
RsaNI	GTAC	2 cut(s)	295, 411
SalI	GTCGAC	2 cut(s)	164, 477
SaqAI	TTAA	3 cut(s)	332, 579, 653
SatI	GCNGC	5 cut(s)	100, 510, 641, 644, 879
Sau3AI	GATC	2 cut(s)	490, 535
ScrFI	CCNGG	1 cut(s)	841
SfaNI	GCATC	1 cut(s)	727
SfcI	CTRYAG	3 cut(s)	26, 741, 768
SmlI	CTYRAG	1 cut(s)	578
SmoI	CTYRAG	1 cut(s)	578
Sse9I	AATT	4 cut(s)	369, 436, 525, 758
SsiI	CCGC	4 cut(s)	5, 97, 100, 640
SspMI	CTAG	4 cut(s)	324, 647, 785, 857
StyD4I	CCNGG	1 cut(s)	839
TaaI	ACNGT	7 cut(s)	22, 30, 163, 382, 415, 516, 683
TaiI	ACGT	3 cut(s)	96, 666, 700
TaqI	TCGA	4 cut(s)	165, 478, 657, 830
TaqII	GACCGA	1 cut(s)	128
TasI	AATT	4 cut(s)	369, 436, 525, 758
TauI	GCSGC	2 cut(s)	102, 643
TfiI	GAWTC	3 cut(s)	268, 393, 746
Tru1I	TTAA	3 cut(s)	332, 579, 653
Tru9I	TTAA	3 cut(s)	332, 579, 653
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	509, 643, 878
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	47, 362
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	688
Vha464I	CTTAAG	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	332
XapI	RAATTY	2 cut(s)	436, 525
XmiI	GTMKAC	2 cut(s)	165, 478
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	4 cut(s)	324, 647, 785, 857

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.