Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016615

Physical Location & Seq

Genomic Coordinates Reverse (-)

22044140 .. 22046655

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19760.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGGCGATCGAGCACACTGTGCTACAGTTCTCCACGTCTCCGTCGTCGAGCTTGTCGGCGAAGGTTCATCCTCTCGTCATATTCAACATCTGCGATTGCTACGTTAGGCGTCCCGACCAGTCCGAGCGCGTCATCGGCACGCTCCTCGGTTCCGTCCTGCCTGACGGCACTGTTGACATCAGAAACTCATACGCTGTTCCTCATATGAGCGCCGAGCAGGTAGCTTTAGATATTGAGTACCATCACAATATGTTGATATCCCACCAGAAGGTGAATCCGAAGGAAGTCATTGTTGGATGGTATTCGACTGGTCTTGGAGTTACTGGTGGTAGCGCATTGTTCCATGAATTCTATTCTAGAGAAGCTCCCAACCCAGTTCATTTGACTGTTGATACTGGATTCGTTAATGGAGCGGGTACCATAAAAGCTTATGTTTCGGTGAATTTGTCTCTTGGAGATCGTCAACTTGCAGCTCAGTTTCAAGAAATTCCTCTTGATCTTCGCATGGTTGAAGCTGAGCGAGTTGGATATGATATTTTAAAGACCCCAATGGTTGACAAACTCCCAACTGATCTGGAAGGAATGGAAGCCTCGATGGAGAGACTTCTAGCTTTAATTGATGATGTTTACAAATATGTTGACAATGTTGTGGAAGGCCGTGCTGAACAAGATAACACTATAGGGAGATTTCTTTTTGATACAATTGCATCTCTTCCGAAACTGTCTCCCTCAGCTTTTGATAAGCTTATCAATGACAGCCTACAGGACAACTTGCTCTTACTGTATTTGTCAAGCATAACAAGGACACAGCTCACCCTAGCCGAAAAATTGAACACAGCTGCACAAGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

286

Amino Acids

31.42

Weight (kDa)

4.98

Isoelectric Point (pI)

34.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39990
fragaria_vesca	FvH4_7g24110
malus_domestica	MD01G1148100.v1.1 MD07G1215300.v1.1
prunus_persica	Prupe.2G247200_v2.0.a1
pyrus_communis	pycom01g16690 pycom07g19760
rosa_chinensis	RchiOBHm_Chr1g0369531
rosa_laevigata	RLG00000027121
rosa_roxburghii	Rroxscaffold_4G00287550
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1BG322900 Rh1DG353700
rosa_wichuraiana	Rw1G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
Acc65I	GGTACC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	416
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	5, 416
AcsI	RAATTY	3 cut(s)	350, 445, 489
AcyI	GRCGYC	1 cut(s)	112
AdeI	CACNNNGTG	1 cut(s)	22
AfaI	GTAC	2 cut(s)	242, 421
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	4 cut(s)	88, 485, 515, 835
AjiI	CACGTC	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	4 cut(s)	45, 456, 598, 732
AoxI	GGCC	1 cut(s)	658
ApeKI	GCWGC	2 cut(s)	473, 842
ApoI	RAATTY	3 cut(s)	350, 445, 489
Asp718I	GGTACC	1 cut(s)	419
AspLEI	GCGC	3 cut(s)	132, 215, 338
AsuHPI	GGTGA	3 cut(s)	286, 454, 808
BanI	GGYRCC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	733
BbvI	GCAGC	2 cut(s)	485, 829
BccI	CCATC	3 cut(s)	252, 294, 592
BceAI	ACGGC	2 cut(s)	184, 645
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BcoDI	GTCTC	4 cut(s)	45, 456, 598, 732
BfaI	CTAG	3 cut(s)	360, 611, 821
BfmI	CTRYAG	3 cut(s)	26, 681, 764
BfoI	RGCGCY	1 cut(s)	216
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	6, 474, 843
BlpI	GCTNAGC	1 cut(s)	519
BlsI	GCNGC	3 cut(s)	7, 475, 844
BmgBI	CACGTC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	154, 421
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	719
BmuI	ACTGGG	1 cut(s)	371
Bpu10I	CCTNAGC	1 cut(s)	733
Bpu1102I	GCTNAGC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse1I	ACTGG	5 cut(s)	121, 316, 331, 377, 403
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	70, 305
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseMII	CTCAG	3 cut(s)	491, 510, 747
BseNI	ACTGG	5 cut(s)	121, 316, 331, 377, 403
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	485, 829
BsgI	GTGCAG	1 cut(s)	828
Bsh1236I	CGCG	1 cut(s)	132
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	1 cut(s)	660
BshNI	GGYRCC	1 cut(s)	419
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	18
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	4 cut(s)	45, 456, 598, 732
BsmBI	CGTCTC	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	660
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	9, 460, 499, 574
Bsp1720I	GCTNAGC	1 cut(s)	519
BspACI	CCGC	2 cut(s)	5, 416
BspANI	GGCC	1 cut(s)	660
BspCNI	CTCAG	3 cut(s)	490, 511, 746
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	154, 421
BspMI	ACCTGC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	419
BsrBI	CCGCTC	1 cut(s)	416
BsrI	ACTGG	5 cut(s)	121, 316, 331, 377, 403
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	9, 460, 499, 574
BssNI	GRCGYC	1 cut(s)	112
Bst4CI	ACNGT	6 cut(s)	22, 30, 175, 391, 726, 786
Bst6I	CTCTTC	1 cut(s)	720
BstACI	GRCGYC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	3 cut(s)	477, 519, 733
BstF5I	GGATG	2 cut(s)	70, 305
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	3 cut(s)	132, 215, 338
BstKTI	GATC	4 cut(s)	12, 463, 502, 577
BstMAI	GTCTC	4 cut(s)	45, 456, 598, 732
BstMBI	GATC	4 cut(s)	9, 460, 499, 574
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 138
BstSFI	CTRYAG	3 cut(s)	26, 681, 764
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	485, 829
BsuRI	GGCC	1 cut(s)	660
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	70, 305
BtsIMutI	CAGTG	2 cut(s)	18, 171
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	143
CfoI	GCGC	3 cut(s)	132, 215, 338
CseI	GACGC	2 cut(s)	101, 121
Csp6I	GTAC	2 cut(s)	241, 420
CviAII	CATG	2 cut(s)	347, 508
CviQI	GTAC	2 cut(s)	241, 420
DdeI	CTNAG	3 cut(s)	477, 519, 733
DpnI	GATC	4 cut(s)	11, 462, 501, 576
DpnII	GATC	4 cut(s)	9, 460, 499, 574
DraI	TTTAAA	1 cut(s)	543
DraIII	CACNNNGTG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco32I	GATATC	1 cut(s)	261
EcoRI	GAATTC	1 cut(s)	350
EcoRV	GATATC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	2 cut(s)	350, 511
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	2 cut(s)	346, 507
FauI	CCCGC	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	207
Fnu4HI	GCNGC	3 cut(s)	6, 474, 843
FokI	GGATG	2 cut(s)	57, 312
Fsp4HI	GCNGC	3 cut(s)	6, 474, 843
FspBI	CTAG	3 cut(s)	360, 611, 821
GlaI	GCGC	3 cut(s)	131, 214, 337
GluI	GCNGC	3 cut(s)	6, 474, 843
HaeII	RGCGCY	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	660
HgaI	GACGC	2 cut(s)	101, 121
HhaI	GCGC	3 cut(s)	132, 215, 338
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	350, 511
Hin6I	GCGC	3 cut(s)	130, 213, 336
HinP1I	GCGC	3 cut(s)	130, 213, 336
HincII	GTYRAC	4 cut(s)	178, 467, 559, 643
HindII	GTYRAC	4 cut(s)	178, 467, 559, 643
HindIII	AAGCTT	2 cut(s)	429, 746
HinfI	GANTC	2 cut(s)	277, 402
HphI	GGTGA	3 cut(s)	286, 454, 808
Hpy166II	GTNNAC	5 cut(s)	178, 467, 559, 631, 643
Hpy188I	TCNGA	4 cut(s)	127, 185, 282, 720
Hpy188III	TCNNGA	5 cut(s)	116, 360, 485, 497, 578
Hpy8I	GTNNAC	5 cut(s)	178, 467, 559, 631, 643
Hpy99I	CGWCG	2 cut(s)	49, 52
HpyAV	CCTTC	5 cut(s)	58, 265, 277, 575, 650
HpyCH4III	ACNGT	6 cut(s)	22, 30, 175, 391, 726, 786
HpyCH4IV	ACGT	2 cut(s)	38, 105
HpyCH4V	TGCA	3 cut(s)	473, 710, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 138
HpyF3I	CTNAG	3 cut(s)	477, 519, 733
HpySE526I	ACGT	2 cut(s)	38, 105
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	2 cut(s)	350, 511
HspAI	GCGC	3 cut(s)	130, 213, 336
KpnI	GGTACC	1 cut(s)	423
Kzo9I	GATC	4 cut(s)	9, 460, 499, 574
LmnI	GCTCC	3 cut(s)	150, 373, 413
Lsp1109I	GCAGC	2 cut(s)	485, 829
LweI	GCATC	1 cut(s)	719
MaeI	CTAG	3 cut(s)	360, 611, 821
MaeII	ACGT	2 cut(s)	38, 105
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	4 cut(s)	11, 462, 501, 576
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	4 cut(s)	9, 460, 499, 574
MboII	GAAGA	2 cut(s)	494, 707
MfeI	CAATTG	1 cut(s)	705
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	6 cut(s)	350, 445, 489, 618, 705, 830
MmeI	TCCRAC	2 cut(s)	277, 508
MnlI	CCTC	6 cut(s)	84, 158, 213, 504, 604, 742
MseI	TTAA	3 cut(s)	408, 542, 617
MspA1I	CMGCKG	1 cut(s)	842
MunI	CAATTG	1 cut(s)	705
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	22, 138
NdeI	CATATG	1 cut(s)	207
NdeII	GATC	4 cut(s)	9, 460, 499, 574
NlaIII	CATG	2 cut(s)	350, 511
NlaIV	GGNNCC	2 cut(s)	154, 421
NmeAIII	GCCGAG	1 cut(s)	241
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	277, 402
PkrI	GCNGC	3 cut(s)	7, 475, 844
Ple19I	CGATCG	1 cut(s)	12
PspN4I	GGNNCC	2 cut(s)	154, 421
PvuI	CGATCG	1 cut(s)	12
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	2 cut(s)	242, 421
RsaNI	GTAC	2 cut(s)	241, 420
SaqAI	TTAA	3 cut(s)	408, 542, 617
SatI	GCNGC	3 cut(s)	6, 474, 843
Sau3AI	GATC	4 cut(s)	9, 460, 499, 574
SduI	GDGCHC	1 cut(s)	18
SfaNI	GCATC	1 cut(s)	719
SfcI	CTRYAG	3 cut(s)	26, 681, 764
Sse9I	AATT	6 cut(s)	350, 445, 489, 618, 705, 830
SsiI	CCGC	2 cut(s)	5, 416
SspMI	CTAG	3 cut(s)	360, 611, 821
TaaI	ACNGT	6 cut(s)	22, 30, 175, 391, 726, 786
TaiI	ACGT	2 cut(s)	41, 108
TaqI	TCGA	4 cut(s)	12, 50, 308, 596
TasI	AATT	6 cut(s)	350, 445, 489, 618, 705, 830
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	277, 402
Tru1I	TTAA	3 cut(s)	408, 542, 617
Tru9I	TTAA	3 cut(s)	408, 542, 617
TscAI	CASTG	2 cut(s)	25, 178
TseI	GCWGC	2 cut(s)	473, 842
TspDTI	ATGAA	3 cut(s)	59, 363, 371
TspGWI	ACGGA	2 cut(s)	33, 145
TspRI	CASTG	2 cut(s)	25, 178
XapI	RAATTY	3 cut(s)	350, 445, 489
XbaI	TCTAGA	1 cut(s)	359
XspI	CTAG	3 cut(s)	360, 611, 821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.