Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0016615

Physical Location & Seq

Genomic Coordinates Reverse (-)

18646016 .. 18648989

Gene Structure 2974 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCGGTGACGGTGAGCGAGCGCACGGTGCTACAGTTCTCGCCGACCTTGACGGCGAAGGTCCATCCTCTCGTCATCTTCAACATCTGCGACTGCTACGTACGCCGTCCTGACCAGACCAAGCGCGTCATCGGAACGCTTCTCGGCTCCGTCCTCCCCGACGGCACCGTCGACATCCGAAACTCCTACGCTGTTCCTCACAACGAGAACTCCGAGGAGGTTGCTTTAGACATTGAATACCATCACAATATGCTGATATCTCAGCAAAAGGTGAATCCTAAGGAAGTCATTGTTGGATGGTACTCAACTGGTCTTGGAGTTACTGGTTGTAGTGTATTAATCCATGACTTCTATTCTCGTGAGGTTCCCAACCCAGTTCATTTGATAGTTGATACGGGATTCAGTAATGGAGAGGGTGCAATAAAAGCATATGTTTCATCAAATTTGTCTCTGTCTCTTGGAGAACTAAAGCAAGCAGTACGACCAGCAGGAGATCATCAACTTCCACTTGCAGCACAGTTTCAAGAAATTCCTCTGGATCTTCGCATGGTTGAAGCCGAGCGAGTTGGATTTGATATTCTTAAGAAAACAATGACGGACAAGCTTCCAACTGATTTGGAAGGAATGGAAGCCTCAATGGAGCGGCTACTAGCTTTAATTGATGATGTCTACAAATATGTTGACGATGTTGACGAAGGACGTGTTGCACCAGATAACAATGTAGGGAGGTTTCTATGGGATGCTGTAGAATCTCTTCCAAAATTGTCTCCTGCAGTTTTTGATAAGCTAGTGAATGACAGCTTGCAGGACAATATGCTCTTGCTATATTTGTCGAGTATCACCAGGACACAGCTTACCCTTGCTGAAAAGTTGAACACAGCTGCTCAGGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

299

Amino Acids

33.02

Weight (kDa)

4.9

Isoelectric Point (pI)

34.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	17 - 124	2.1e-27	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
MitMem_reg	PF13012	185 - 292	1.7e-30	Maintenance of mitochondrial structure and function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39990
fragaria_vesca	FvH4_7g24110
malus_domestica	MD01G1148100.v1.1 MD07G1215300.v1.1
prunus_persica	Prupe.2G247200_v2.0.a1
pyrus_communis	pycom01g16690 pycom07g19760
rosa_chinensis	RchiOBHm_Chr1g0369531
rosa_laevigata	RLG00000027121
rosa_roxburghii	Rroxscaffold_4G00287550
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1BG322900 Rh1DG353700
rosa_wichuraiana	Rw1G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AccB1I	GGYRCC	1 cut(s)	164
AccBSI	CCGCTC	1 cut(s)	643
AccI	GTMKAC	2 cut(s)	171, 669
AccII	CGCG	1 cut(s)	126
AciI	CCGC	2 cut(s)	5, 643
AclWI	GGATC	1 cut(s)	546
AcsI	RAATTY	2 cut(s)	442, 528
AfaI	GTAC	3 cut(s)	102, 302, 480
AflII	CTTAAG	1 cut(s)	581
AflIII	ACRYGT	1 cut(s)	700
AgsI	TTSAA	5 cut(s)	82, 236, 524, 554, 874
AjiI	CACGTC	1 cut(s)	701
AjnI	CCWGG	1 cut(s)	842
AjuI	GAANNNNNNNTTGG	2 cut(s)	276, 308
AluBI	AGCT	6 cut(s)	604, 653, 787, 801, 853, 881
AluI	AGCT	6 cut(s)	604, 653, 787, 801, 853, 881
Alw26I	GTCTC	3 cut(s)	453, 459, 771
AlwI	GGATC	1 cut(s)	546
AlwNI	CAGNNNCTG	1 cut(s)	892
ApeKI	GCWGC	2 cut(s)	512, 881
ApoI	RAATTY	2 cut(s)	442, 528
AseI	ATTAAT	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	753
AspLEI	GCGC	2 cut(s)	24, 126
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	19, 25, 283, 832
AvaII	GGWCC	1 cut(s)	61
AxyI	CCTNAGG	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	738, 770
BauI	CACGAG	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	524, 868
BccI	CCATC	3 cut(s)	72, 249, 291
BceAI	ACGGC	3 cut(s)	69, 90, 178
BcgI	CGANNNNNNTGC	2 cut(s)	203, 237
BciT130I	CCWGG	1 cut(s)	844
BcoDI	GTCTC	3 cut(s)	453, 459, 771
BfaI	CTAG	2 cut(s)	650, 788
BfmI	CTRYAG	3 cut(s)	32, 744, 771
BfrI	CTTAAG	1 cut(s)	581
BisI	GCNGC	3 cut(s)	513, 644, 882
BlsI	GCNGC	3 cut(s)	514, 645, 883
Bme1390I	CCNGG	1 cut(s)	844
Bme18I	GGWCC	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	701
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	3 cut(s)	148, 166, 366
BmrFI	CCNGG	1 cut(s)	844
BmrI	ACTGGG	1 cut(s)	368
BmsI	GCATC	1 cut(s)	730
BmuI	ACTGGG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	885
BsaAI	YACGTR	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bse1I	ACTGG	3 cut(s)	313, 328, 374
Bse21I	CCTNAGG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	844
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	4 cut(s)	64, 174, 302, 745
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	3 cut(s)	313, 328, 374
BseRI	GAGGAG	1 cut(s)	230
BseXI	GCAGC	2 cut(s)	524, 868
Bsh1236I	CGCG	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	164
BsiWI	CGTACG	1 cut(s)	100
BsmAI	GTCTC	3 cut(s)	453, 459, 771
Bsp143I	GATC	2 cut(s)	493, 538
BspACI	CCGC	2 cut(s)	5, 643
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	126
BspLI	GGNNCC	3 cut(s)	148, 166, 366
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	581
BsrBI	CCGCTC	1 cut(s)	643
BsrI	ACTGG	3 cut(s)	313, 328, 374
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	2 cut(s)	493, 538
BssSI	CACGAG	1 cut(s)	357
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	5 cut(s)	13, 28, 36, 169, 519
Bst6I	CTCTTC	1 cut(s)	759
BstAFI	CTTAAG	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	3 cut(s)	20, 474, 803
BstDEI	CTNAG	3 cut(s)	261, 279, 885
BstF5I	GGATG	4 cut(s)	64, 174, 302, 745
BstFNI	CGCG	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	24, 126
BstKTI	GATC	2 cut(s)	496, 541
BstMAI	GTCTC	3 cut(s)	453, 459, 771
BstMBI	GATC	2 cut(s)	493, 538
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 102, 425
BstNI	CCWGG	1 cut(s)	844
BstSCI	CCNGG	1 cut(s)	842
BstSFI	CTRYAG	3 cut(s)	32, 744, 771
BstSNI	TACGTA	1 cut(s)	100
BstUI	CGCG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	524, 868
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
Bsu36I	CCTNAGG	1 cut(s)	279
BtrI	CACGTC	1 cut(s)	701
BtsCI	GGATG	4 cut(s)	64, 174, 302, 745
Cac8I	GCNNGC	3 cut(s)	20, 474, 803
CaiI	CAGNNNCTG	1 cut(s)	892
CfoI	GCGC	2 cut(s)	24, 126
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	115
Csp6I	GTAC	3 cut(s)	101, 301, 479
CviAII	CATG	2 cut(s)	344, 547
CviQI	GTAC	3 cut(s)	101, 301, 479
DdeI	CTNAG	3 cut(s)	261, 279, 885
DpnI	GATC	2 cut(s)	495, 540
DpnII	GATC	2 cut(s)	493, 538
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	759
EarI	CTCTTC	1 cut(s)	759
Eco105I	TACGTA	1 cut(s)	100
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	61
Eco81I	CCTNAGG	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	842
EcoRV	GATATC	1 cut(s)	258
FaeI	CATG	2 cut(s)	347, 550
FaiI	YATR	9 cut(s)	251, 345, 430, 432, 548, 678, 736, 815, 826
FatI	CATG	2 cut(s)	343, 546
FauNDI	CATATG	1 cut(s)	430
FblI	GTMKAC	2 cut(s)	171, 669
Fnu4HI	GCNGC	3 cut(s)	513, 644, 882
FokI	GGATG	4 cut(s)	51, 161, 309, 752
Fsp4HI	GCNGC	3 cut(s)	513, 644, 882
FspBI	CTAG	2 cut(s)	650, 788
GlaI	GCGC	2 cut(s)	23, 125
GluI	GCNGC	3 cut(s)	513, 644, 882
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	2 cut(s)	24, 126
Hin1II	CATG	2 cut(s)	347, 550
Hin6I	GCGC	2 cut(s)	22, 124
HinP1I	GCGC	2 cut(s)	22, 124
HincII	GTYRAC	3 cut(s)	172, 682, 691
HindII	GTYRAC	3 cut(s)	172, 682, 691
HindIII	AAGCTT	1 cut(s)	602
HinfI	GANTC	3 cut(s)	274, 399, 749
HphI	GGTGA	4 cut(s)	19, 25, 283, 832
Hpy166II	GTNNAC	4 cut(s)	172, 670, 682, 691
Hpy188I	TCNGA	3 cut(s)	134, 179, 214
Hpy188III	TCNNGA	4 cut(s)	110, 359, 524, 536
Hpy8I	GTNNAC	4 cut(s)	172, 670, 682, 691
Hpy99I	CGWCG	2 cut(s)	164, 173
HpyAV	CCTTC	3 cut(s)	52, 614, 689
HpyCH4III	ACNGT	5 cut(s)	13, 28, 36, 169, 519
HpyCH4IV	ACGT	2 cut(s)	99, 700
HpyCH4V	TGCA	5 cut(s)	419, 512, 707, 773, 805
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 102, 425
HpyF3I	CTNAG	3 cut(s)	261, 279, 885
HpySE526I	ACGT	2 cut(s)	99, 700
Hsp92II	CATG	2 cut(s)	347, 550
HspAI	GCGC	2 cut(s)	22, 124
Kzo9I	GATC	2 cut(s)	493, 538
LmnI	GCTCC	2 cut(s)	152, 640
Lsp1109I	GCAGC	2 cut(s)	524, 868
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	2 cut(s)	650, 788
MaeII	ACGT	2 cut(s)	99, 700
MaeIII	GTNAC	2 cut(s)	7, 319
MalI	GATC	2 cut(s)	495, 540
MbiI	CCGCTC	1 cut(s)	643
MboI	GATC	2 cut(s)	493, 538
MboII	GAAGA	3 cut(s)	70, 533, 746
MflI	RGATCY	1 cut(s)	538
MluCI	AATT	4 cut(s)	442, 528, 657, 761
MmeI	TCCRAC	3 cut(s)	274, 547, 632
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	3 cut(s)	338, 582, 656
MspA1I	CMGCKG	1 cut(s)	881
MspCI	CTTAAG	1 cut(s)	581
MspR9I	CCNGG	1 cut(s)	844
MvaI	CCWGG	1 cut(s)	844
MvnI	CGCG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	28, 102, 425
NdeI	CATATG	1 cut(s)	430
NdeII	GATC	2 cut(s)	493, 538
NlaIII	CATG	2 cut(s)	347, 550
NlaIV	GGNNCC	3 cut(s)	148, 166, 366
NmeAIII	GCCGAG	2 cut(s)	123, 583
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 210, 690
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	3 cut(s)	274, 399, 749
Pfl23II	CGTACG	1 cut(s)	100
PkrI	GCNGC	3 cut(s)	514, 645, 883
Ppu21I	YACGTR	1 cut(s)	100
PshBI	ATTAAT	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	842
PspLI	CGTACG	1 cut(s)	100
PspN4I	GGNNCC	3 cut(s)	148, 166, 366
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	538
PvuII	CAGCTG	1 cut(s)	881
RsaI	GTAC	3 cut(s)	102, 302, 480
RsaNI	GTAC	3 cut(s)	101, 301, 479
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	3 cut(s)	338, 582, 656
SatI	GCNGC	3 cut(s)	513, 644, 882
Sau3AI	GATC	2 cut(s)	493, 538
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	844
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	3 cut(s)	32, 744, 771
SinI	GGWCC	1 cut(s)	61
SmlI	CTYRAG	1 cut(s)	581
SmoI	CTYRAG	1 cut(s)	581
SnaBI	TACGTA	1 cut(s)	100
Sse9I	AATT	4 cut(s)	442, 528, 657, 761
SsiI	CCGC	2 cut(s)	5, 643
SspMI	CTAG	2 cut(s)	650, 788
StyD4I	CCNGG	1 cut(s)	842
TaaI	ACNGT	5 cut(s)	13, 28, 36, 169, 519
TaiI	ACGT	2 cut(s)	102, 703
TaqI	TCGA	2 cut(s)	171, 833
TasI	AATT	4 cut(s)	442, 528, 657, 761
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	3 cut(s)	274, 399, 749
Tru1I	TTAA	3 cut(s)	338, 582, 656
Tru9I	TTAA	3 cut(s)	338, 582, 656
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	2 cut(s)	512, 881
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	368, 426
TspGWI	ACGGA	2 cut(s)	139, 611
Vha464I	CTTAAG	1 cut(s)	581
VpaK11BI	GGWCC	1 cut(s)	61
VspI	ATTAAT	1 cut(s)	338
XapI	RAATTY	2 cut(s)	442, 528
XmiI	GTMKAC	2 cut(s)	171, 669
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	2 cut(s)	650, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.