Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016615

Physical Location & Seq

Genomic Coordinates Reverse (-)

26347959 .. 26350998

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G247200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGGTGATCGAGCACACAGTTTTGCAGTTCTCCACGTCTTCGTCATCGAGCTTGTCGGCGAAGGTTCATCCTCTCGTCATCTTCAACATCTGCGATTGCTATGTCAGGCGTCCTGACCAAGCCGAGCGCGTTATTGGCACGCTCCTCGGCTCTGTCCTGCCTGATGGCACAGTCGATATTAGAAACTCTTACGCCGTTCCTCATAACGAGAGCGCTGACCAGGTTGCTTTAGATATCGATTACCATCACAATATGCTCATATCCCAGCAAAAGGTGAATCCAAAGGAAGTCATTGTTGGATGGTATTCTACTGGTTTTGGAGTTACTGGGGGTAGCGTATTGATCCATGAGTTCTATTCTAGGGAGGCTCCCAACCCTGTTCATTTGACCGTTGATACTGGATTTAGAAATGGGGAGGGTACCATTAAAGCCTATGTTTCAGTGAATTTGTCTCTTGGAGATCGGCAACTTGCAGCACAGTTTCAAGAAATTCCTCTCGATCTTCGTATGGTTGAAGCTGAGAGAGTTGGATATGATATTCTAAAGACCACAATGGTTGACAAACTCCCTACTGATTTGGAAGGAATGGAAGCCTCAATGGAGCGACTCCTAGCTTTAATTGATGATGTTTACAAATATGTTGACAATGTTGTGGAAAGTCGTGTTGAACCCGATAACAACATAGGGAGATTTCTCTTAGATGCAGTTGCATCTCTTCCGAAATTATCTCCTACAGCTTTTGATAAGCTTGTGAATGACAGCCTGCAGGACAATTTGGTCTTGCTCTATTTGTCAAGCATCACCAGGACACAGCTCACCCTAGCCGAAAAGTTGAACACGGCTGCGCAGGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009743 GO:0009744 GO:0009790 GO:0009791 GO:0009793 GO:0009846 GO:0009856 GO:0009987 GO:0010033 GO:0010154 GO:0010467 GO:0016020 GO:0019538 GO:0022414 GO:0031369 GO:0032501 GO:0032502 GO:0032991 GO:0034285 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0044706 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0061458 GO:0071541 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

JAB MitMem_reg

Protein Analysis

287

Amino Acids

31.59

Weight (kDa)

4.85

Isoelectric Point (pI)

32.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016615)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39990
fragaria_vesca	FvH4_7g24110
malus_domestica	MD01G1148100.v1.1 MD07G1215300.v1.1
prunus_persica	Prupe.2G247200_v2.0.a1
pyrus_communis	pycom01g16690 pycom07g19760
rosa_chinensis	RchiOBHm_Chr1g0369531
rosa_laevigata	RLG00000027121
rosa_roxburghii	Rroxscaffold_4G00287550
rosa_rugosa	Rorug01G0351100
rosa_samantha	Rh1BG322900 Rh1DG353700
rosa_wichuraiana	Rw1G031650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	779
Acc16I	TGCGCA	1 cut(s)	849
Acc36I	ACCTGC	1 cut(s)	841
Acc65I	GGTACC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	132
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	448, 492
AcyI	GRCGYC	1 cut(s)	112
AfaI	GTAC	1 cut(s)	424
AfeI	AGCGCT	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	88, 488, 518, 671, 838
AjiI	CACGTC	1 cut(s)	39
AjnI	CCWGG	2 cut(s)	222, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	6 cut(s)	54, 521, 617, 740, 751, 817
AluI	AGCT	6 cut(s)	54, 521, 617, 740, 751, 817
Alw21I	GWGCWC	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	459
AlwI	GGATC	1 cut(s)	340
AlwNI	CAGNNNCTG	1 cut(s)	856
Aor51HI	AGCGCT	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	476, 845
ApoI	RAATTY	2 cut(s)	448, 492
Asp718I	GGTACC	1 cut(s)	422
AspLEI	GCGC	3 cut(s)	132, 218, 850
AsuHPI	GGTGA	4 cut(s)	19, 289, 796, 811
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	33
Bbv12I	GWGCWC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	488, 832
BccI	CCATC	3 cut(s)	161, 255, 297
BceAI	ACGGC	2 cut(s)	182, 858
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	2 cut(s)	224, 808
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	3 cut(s)	363, 614, 824
BfmI	CTRYAG	2 cut(s)	735, 767
BfoI	RGCGCY	1 cut(s)	219
BfuAI	ACCTGC	1 cut(s)	841
BisI	GCNGC	2 cut(s)	477, 846
BlsI	GCNGC	2 cut(s)	478, 847
Bme1390I	CCNGG	2 cut(s)	224, 808
BmgBI	CACGTC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	372, 424
BmrFI	CCNGG	2 cut(s)	224, 808
BmrI	ACTGGG	1 cut(s)	339
BmsI	GCATC	3 cut(s)	694, 722, 810
BmuI	ACTGGG	1 cut(s)	339
BpiI	GAAGAC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	246
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	148
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse1I	ACTGG	3 cut(s)	319, 334, 406
Bse8I	GATNNNNATC	1 cut(s)	246
BseBI	CCWGG	2 cut(s)	224, 808
BseCI	ATCGAT	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	2 cut(s)	70, 308
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	3 cut(s)	319, 334, 406
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	488, 832
BseYI	CCCAGC	1 cut(s)	267
Bsh1236I	CGCG	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	18
Bsp143I	GATC	4 cut(s)	9, 345, 463, 502
BspACI	CCGC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	514
BspDI	ATCGAT	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	372, 424
BspMAI	CTGCAG	1 cut(s)	771
BspMI	ACCTGC	1 cut(s)	841
BspPI	GGATC	1 cut(s)	340
BspT107I	GGYRCC	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	319, 334, 406
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	4 cut(s)	9, 345, 463, 502
BssNI	GRCGYC	1 cut(s)	112
Bst2UI	CCWGG	2 cut(s)	224, 808
Bst4CI	ACNGT	4 cut(s)	22, 175, 394, 483
Bst6I	CTCTTC	1 cut(s)	723
BstACI	GRCGYC	1 cut(s)	112
BstC8I	GCNNGC	2 cut(s)	143, 767
BstDEI	CTNAG	2 cut(s)	522, 700
BstF5I	GGATG	2 cut(s)	70, 308
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	3 cut(s)	132, 218, 850
BstKTI	GATC	4 cut(s)	12, 348, 466, 505
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	4 cut(s)	9, 345, 463, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstNI	CCWGG	2 cut(s)	224, 808
BstSCI	CCNGG	2 cut(s)	222, 806
BstSFI	CTRYAG	2 cut(s)	735, 767
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	488, 832
BstV2I	GAAGAC	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	240
BsuTUI	ATCGAT	1 cut(s)	240
BtrI	CACGTC	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	70, 308
BtsIMutI	CAGTG	1 cut(s)	450
BveI	ACCTGC	1 cut(s)	841
Cac8I	GCNNGC	2 cut(s)	143, 767
CaiI	CAGNNNCTG	1 cut(s)	856
CfoI	GCGC	3 cut(s)	132, 218, 850
ClaI	ATCGAT	1 cut(s)	240
CseI	GACGC	1 cut(s)	101
CsiI	ACCWGGT	1 cut(s)	222
Csp6I	GTAC	1 cut(s)	423
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	1 cut(s)	350
CviQI	GTAC	1 cut(s)	423
DdeI	CTNAG	2 cut(s)	522, 700
DpnI	GATC	4 cut(s)	11, 347, 465, 504
DpnII	GATC	4 cut(s)	9, 345, 463, 502
DrdI	GACNNNNNNGTC	1 cut(s)	779
DseDI	GACNNNNNNGTC	1 cut(s)	779
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
Eco32I	GATATC	1 cut(s)	238
Eco47III	AGCGCT	1 cut(s)	217
EcoRII	CCWGG	2 cut(s)	222, 806
EcoRV	GATATC	1 cut(s)	238
FaeI	CATG	1 cut(s)	353
FatI	CATG	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	477, 846
FokI	GGATG	2 cut(s)	57, 315
Fsp4HI	GCNGC	2 cut(s)	477, 846
FspBI	CTAG	3 cut(s)	363, 614, 824
FspI	TGCGCA	1 cut(s)	849
GlaI	GCGC	3 cut(s)	131, 217, 849
GluI	GCNGC	2 cut(s)	477, 846
GsaI	CCCAGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	219
HgaI	GACGC	1 cut(s)	101
HhaI	GCGC	3 cut(s)	132, 218, 850
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	353
Hin6I	GCGC	3 cut(s)	130, 216, 848
HinP1I	GCGC	3 cut(s)	130, 216, 848
HincII	GTYRAC	2 cut(s)	562, 646
HindII	GTYRAC	2 cut(s)	562, 646
HindIII	AAGCTT	1 cut(s)	749
HinfI	GANTC	2 cut(s)	280, 609
HphI	GGTGA	4 cut(s)	19, 289, 796, 811
Hpy166II	GTNNAC	3 cut(s)	562, 634, 646
Hpy188I	TCNGA	1 cut(s)	723
Hpy188III	TCNNGA	3 cut(s)	116, 488, 500
Hpy8I	GTNNAC	3 cut(s)	562, 634, 646
HpyAV	CCTTC	2 cut(s)	58, 578
HpyCH4III	ACNGT	4 cut(s)	22, 175, 394, 483
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	5 cut(s)	28, 476, 707, 713, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	2 cut(s)	522, 700
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	353
HspAI	GCGC	3 cut(s)	130, 216, 848
KpnI	GGTACC	1 cut(s)	426
Kzo9I	GATC	4 cut(s)	9, 345, 463, 502
LmnI	GCTCC	3 cut(s)	150, 376, 604
Lsp1109I	GCAGC	2 cut(s)	488, 832
LweI	GCATC	3 cut(s)	694, 722, 810
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	3 cut(s)	363, 614, 824
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	11, 347, 465, 504
MboI	GATC	4 cut(s)	9, 345, 463, 502
MboII	GAAGA	4 cut(s)	33, 76, 497, 710
MhlI	GDGCHC	1 cut(s)	18
MluCI	AATT	5 cut(s)	448, 492, 621, 725, 775
MlyI	GAGTC	1 cut(s)	603
MmeI	TCCRAC	2 cut(s)	280, 511
MnlI	CCTC	7 cut(s)	84, 158, 213, 361, 412, 507, 607
MseI	TTAA	2 cut(s)	429, 620
MspR9I	CCNGG	2 cut(s)	224, 808
MvaI	CCWGG	2 cut(s)	224, 808
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	4 cut(s)	9, 345, 463, 502
NlaIII	CATG	1 cut(s)	353
NlaIV	GGNNCC	2 cut(s)	372, 424
NmeAIII	GCCGAG	2 cut(s)	129, 151
NsbI	TGCGCA	1 cut(s)	849
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	478, 847
PleI	GAGTC	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	222, 806
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	2 cut(s)	222, 806
PspN4I	GGNNCC	2 cut(s)	372, 424
PstI	CTGCAG	1 cut(s)	771
PstNI	CAGNNNCTG	1 cut(s)	856
RsaI	GTAC	1 cut(s)	424
RsaNI	GTAC	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	429, 620
SatI	GCNGC	2 cut(s)	477, 846
Sau3AI	GATC	4 cut(s)	9, 345, 463, 502
SbfI	CCTGCAGG	1 cut(s)	771
SchI	GAGTC	1 cut(s)	603
ScrFI	CCNGG	2 cut(s)	224, 808
SdaI	CCTGCAGG	1 cut(s)	771
SduI	GDGCHC	1 cut(s)	18
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	3 cut(s)	694, 722, 810
SfcI	CTRYAG	2 cut(s)	735, 767
Sse8387I	CCTGCAGG	1 cut(s)	771
Sse9I	AATT	5 cut(s)	448, 492, 621, 725, 775
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	363, 614, 824
StyD4I	CCNGG	2 cut(s)	222, 806
TaaI	ACNGT	4 cut(s)	22, 175, 394, 483
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	5 cut(s)	12, 50, 177, 240, 501
TasI	AATT	5 cut(s)	448, 492, 621, 725, 775
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	2 cut(s)	429, 620
Tru9I	TTAA	2 cut(s)	429, 620
TscAI	CASTG	1 cut(s)	450
TseI	GCWGC	2 cut(s)	476, 845
TspDTI	ATGAA	2 cut(s)	59, 374
TspRI	CASTG	1 cut(s)	450
XapI	RAATTY	2 cut(s)	448, 492
XspI	CTAG	3 cut(s)	363, 614, 824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.