Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Reverse (-)

16878901 .. 16882498

Gene Structure 3598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40430.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGGGAAGAGGTCGAAAACATCAAGGAAAGGGAAAAAAGCATGGAGGGCTAACATTAGCTCCGAGGACATTGAAGATTTCTTCGAGAAAACTACCAGAGATGCTCTCTCCGGTGGCAATCTCTCCGCTGCTCCCAGCGAAGACTTGTTCCACGTCGATAAATCCCATGACCTTCCGGTGAAGCGAAAGATTGAGAAACATAGAGAGAGAGTGCTCCGTGTTGACAGTATCTTAAAGAAGAATCCATTTGTCCAGTTAGTGCCATCTTCAAAGCCAAAGTTGAAGAAAAGTAAGAAGACAATCGTTATAGAAGACAAAGCACCTAAACAAGTTCAAAAAAGTGTTGGTGACGATTCTGTAATGGCCGACTTGTGGGGTGATGATAGTAAAGGAGAACATGAGAGCAATCCTAGAAAGATTTTCAAAAATCCTTCGATTATTTCAGCAGTAGAAATTGAACATCCAGGATGCTCATACAACCCTACAACTGAGAGTCACCAGGATATGTTGGCTGAAGCCGTCGCTCAAGAAATGCAGAAAGTTTACAAAACTGAGTTAGGGCCTGCACCTGTTCCTTTGACTATTGAAGGGGATACACTCAGTGAAGATGAGAGGTACTTTCTTGATGTGGACAATTTTAGTGAAGGCGAAGATAATGAAAACGTTGAGAATGAAGTGTCAGAGGCTGGAATTAAATTAAAGGAGAACCCATTTGTCCAGTTAAAGCCATCTTCAAATACAAACTTGAAGAAAATAGAAGACAAAACACCTAGACAAGCTCAAAAAAGTGTTGGTGACGATTCTGTAATGGTGGACTTGTTGGGTGATGATATTAAAGAAGACCTGAAGTACTTTCTTGAAGTGGGCAATGTTGGTGAAGGTGAAGATAATAAAGATGTTAAGATTGAAGTGTCAGAGGCTGGGAACAATGTCTCAAGGAAAACAAAGAGGGTTACCCGTGTGGAATTAAATAAGCGATGTAGGCAAAAGGCACTGCGAAAAAAAGAGACAAAGGAAAAGGCTAAAGAGAAGATATTAAACGAAATTGACAGCTTGCCCAACATCTTAGAAGAAATAGCCAAAGAAGATGAGGATAAACAGAATAAACATTTACGAAGGGTCATCGCCAAGCAGGAAGTGCTGAAGATACGTCCTCCTCGGTTGGGAAAGTACAAATTTGAGGCTCCTCCAGTTCAAGTCCTCTTGACAGAAGAGATGACTGGGTCACTTCGTAAGCTGAAGGCATGTTGCACTCTTGCAAGAGATCGATTCAAGAGCCTCGAGAAGCGAGGAATACTTGTTCCCTCAAAACAGATTAGAAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

442

Amino Acids

50.16

Weight (kDa)

8.94

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop53	PF07767	8 - 111	8.6e-21	Nop53 (60S ribosomal biogenesis)
Nop53	PF07767	148 - 278	2e-25	Nop53 (60S ribosomal biogenesis)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	126
AclI	AACGTT	1 cut(s)	663
AcoI	YGGCCR	1 cut(s)	363
AcsI	RAATTY	1 cut(s)	1175
AcuI	CTGAAG	4 cut(s)	534, 866, 1163, 1259
AdeI	CACNNNGTG	1 cut(s)	602
AfaI	GTAC	3 cut(s)	617, 851, 1172
AfiI	CCNNNNNNNGG	2 cut(s)	372, 1163
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	2 cut(s)	463, 498
AloI	GAACNNNNNNTCC	2 cut(s)	1284, 1316
AluBI	AGCT	4 cut(s)	60, 779, 1053, 1237
AluI	AGCT	4 cut(s)	60, 779, 1053, 1237
Alw21I	GWGCWC	1 cut(s)	216
Alw26I	GTCTC	2 cut(s)	937, 1001
AlwNI	CAGNNNCTG	2 cut(s)	686, 920
Ama87I	CYCGRG	1 cut(s)	1280
AoxI	GGCC	2 cut(s)	363, 560
ApeKI	GCWGC	1 cut(s)	128
ApoI	RAATTY	1 cut(s)	1175
AspS9I	GGNCC	1 cut(s)	560
AsuHPI	GGTGA	8 cut(s)	190, 359, 389, 488, 806, 836, 887, 893
AvaI	CYCGRG	1 cut(s)	1280
BbsI	GAAGAC	5 cut(s)	147, 302, 318, 765, 846
Bbv12I	GWGCWC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	115
BccI	CCATC	2 cut(s)	271, 736
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	2 cut(s)	465, 500
BciVI	GTATCC	1 cut(s)	586
BcoDI	GTCTC	2 cut(s)	937, 1001
BfaI	CTAG	2 cut(s)	411, 771
BfuI	GTATCC	1 cut(s)	586
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
BmcAI	AGTACT	1 cut(s)	851
Bme1390I	CCNGG	2 cut(s)	465, 500
BmeT110I	CYCGRG	1 cut(s)	1280
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	1185
BmrFI	CCNGG	2 cut(s)	465, 500
BmrI	ACTGGG	1 cut(s)	1230
BmsI	GCATC	2 cut(s)	91, 458
BmuI	ACTGGG	1 cut(s)	1230
BpiI	GAAGAC	5 cut(s)	147, 302, 318, 765, 846
BplI	GAGNNNNNCTC	2 cut(s)	90, 122
BpmI	CTGGAG	1 cut(s)	1173
BpuEI	CTTGAG	2 cut(s)	510, 919
Bsa29I	ATCGAT	1 cut(s)	1267
BsaJI	CCNNGG	2 cut(s)	63, 1157
BsaWI	WCCGGW	2 cut(s)	110, 175
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 1163
Bse1I	ACTGG	4 cut(s)	253, 718, 1190, 1225
Bse3DI	GCAATG	1 cut(s)	874
BseBI	CCWGG	2 cut(s)	465, 500
BseCI	ATCGAT	1 cut(s)	1267
BseDI	CCNNGG	2 cut(s)	63, 1157
BseGI	GGATG	2 cut(s)	460, 473
BseLI	CCNNNNNNNGG	2 cut(s)	372, 1163
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	3 cut(s)	480, 543, 613
BseNI	ACTGG	4 cut(s)	253, 718, 1190, 1225
BseRI	GAGGAG	2 cut(s)	1146, 1176
BseXI	GCAGC	1 cut(s)	115
BseYI	CCCAGC	2 cut(s)	134, 920
BsgI	GTGCAG	1 cut(s)	549
BshFI	GGCC	2 cut(s)	365, 562
BshVI	ATCGAT	1 cut(s)	1267
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	1280
BsiSI	CCGG	2 cut(s)	111, 176
BslI	CCNNNNNNNGG	2 cut(s)	372, 1163
BsmAI	GTCTC	2 cut(s)	937, 1001
BsnI	GGCC	2 cut(s)	365, 562
BsoBI	CYCGRG	1 cut(s)	1280
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	1264
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	365, 562
BspCNI	CTCAG	3 cut(s)	481, 544, 612
BspDI	ATCGAT	1 cut(s)	1267
BspLI	GGNNCC	1 cut(s)	1185
BsrDI	GCAATG	1 cut(s)	874
BsrI	ACTGG	4 cut(s)	253, 718, 1190, 1225
BssECI	CCNNGG	2 cut(s)	63, 1157
BssMI	GATC	1 cut(s)	1264
Bst2UI	CCWGG	2 cut(s)	465, 500
Bst4CI	ACNGT	1 cut(s)	227
Bst6I	CTCTTC	2 cut(s)	2, 1206
BstAPI	GCANNNNNTGC	1 cut(s)	1138
BstC8I	GCNNGC	2 cut(s)	564, 1055
BstDEI	CTNAG	4 cut(s)	489, 552, 599, 1066
BstEII	GGTNACC	1 cut(s)	952
BstF5I	GGATG	2 cut(s)	460, 473
BstKTI	GATC	1 cut(s)	1267
BstMAI	GTCTC	2 cut(s)	937, 1001
BstMBI	GATC	1 cut(s)	1264
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 982, 1138
BstNI	CCWGG	2 cut(s)	465, 500
BstNSI	RCATGY	1 cut(s)	1248
BstPI	GGTNACC	1 cut(s)	952
BstSCI	CCNGG	2 cut(s)	463, 498
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	5 cut(s)	147, 302, 318, 765, 846
Bsu15I	ATCGAT	1 cut(s)	1267
BsuI	GTATCC	1 cut(s)	586
BsuRI	GGCC	2 cut(s)	365, 562
BsuTUI	ATCGAT	1 cut(s)	1267
BtgZI	GCGATG	2 cut(s)	991, 1108
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	460, 473
BtsI	GCAGTG	1 cut(s)	992
BtsIMutI	CAGTG	2 cut(s)	607, 992
Cac8I	GCNNGC	2 cut(s)	564, 1055
CaiI	CAGNNNCTG	2 cut(s)	686, 920
Cfr13I	GGNCC	1 cut(s)	560
ClaI	ATCGAT	1 cut(s)	1267
Csp6I	GTAC	3 cut(s)	616, 850, 1171
CviAII	CATG	4 cut(s)	42, 167, 398, 1245
CviQI	GTAC	3 cut(s)	616, 850, 1171
DdeI	CTNAG	4 cut(s)	489, 552, 599, 1066
DpnI	GATC	1 cut(s)	1266
DpnII	GATC	1 cut(s)	1264
DraIII	CACNNNGTG	1 cut(s)	602
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	2, 1206
EarI	CTCTTC	2 cut(s)	2, 1206
Eco57I	CTGAAG	4 cut(s)	534, 866, 1163, 1259
Eco88I	CYCGRG	1 cut(s)	1280
Eco91I	GGTNACC	1 cut(s)	952
EcoO109I	RGGNCCY	1 cut(s)	560
EcoO65I	GGTNACC	1 cut(s)	952
EcoRII	CCWGG	2 cut(s)	463, 498
FaeI	CATG	4 cut(s)	45, 170, 401, 1248
FaiI	YATR	8 cut(s)	43, 168, 201, 308, 399, 475, 506, 1246
FatI	CATG	4 cut(s)	41, 166, 397, 1244
Fnu4HI	GCNGC	1 cut(s)	129
FokI	GGATG	2 cut(s)	447, 480
Fsp4HI	GCNGC	1 cut(s)	129
FspBI	CTAG	2 cut(s)	411, 771
GluI	GCNGC	1 cut(s)	129
GsaI	CCCAGC	2 cut(s)	138, 924
GsuI	CTGGAG	1 cut(s)	1173
HaeIII	GGCC	2 cut(s)	365, 562
HapII	CCGG	2 cut(s)	111, 176
Hin1II	CATG	4 cut(s)	45, 170, 401, 1248
HincII	GTYRAC	1 cut(s)	223
HindII	GTYRAC	1 cut(s)	223
HinfI	GANTC	5 cut(s)	241, 353, 493, 800, 1269
HpaII	CCGG	2 cut(s)	111, 176
HphI	GGTGA	8 cut(s)	190, 359, 389, 488, 806, 836, 887, 893
Hpy166II	GTNNAC	4 cut(s)	223, 544, 631, 814
Hpy188I	TCNGA	3 cut(s)	64, 682, 916
Hpy188III	TCNNGA	7 cut(s)	85, 527, 623, 857, 1204, 1273, 1282
Hpy8I	GTNNAC	4 cut(s)	223, 544, 631, 814
Hpy99I	CGWCG	2 cut(s)	158, 524
HpyAV	CCTTC	8 cut(s)	182, 441, 581, 638, 872, 1110, 1234, 1314
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	3 cut(s)	153, 663, 1150
HpyCH4V	TGCA	4 cut(s)	535, 566, 1251, 1259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 982, 1138
HpyF3I	CTNAG	4 cut(s)	489, 552, 599, 1066
HpySE526I	ACGT	3 cut(s)	153, 663, 1150
Hsp92II	CATG	4 cut(s)	45, 170, 401, 1248
Kzo9I	GATC	1 cut(s)	1264
LmnI	GCTCC	4 cut(s)	65, 136, 219, 1189
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	2 cut(s)	91, 458
MaeI	CTAG	2 cut(s)	411, 771
MaeII	ACGT	3 cut(s)	153, 663, 1150
MaeIII	GTNAC	5 cut(s)	347, 494, 794, 952, 1224
MalI	GATC	1 cut(s)	1266
MboI	GATC	1 cut(s)	1264
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	7 cut(s)	453, 634, 690, 695, 965, 1044, 1175
MlyI	GAGTC	1 cut(s)	502
MseI	TTAA	8 cut(s)	233, 693, 698, 722, 834, 900, 968, 1037
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	2 cut(s)	111, 176
MspR9I	CCNGG	2 cut(s)	465, 500
MvaI	CCWGG	2 cut(s)	465, 500
MwoI	GCNNNNNNNGC	3 cut(s)	47, 982, 1138
NdeII	GATC	1 cut(s)	1264
NlaIII	CATG	4 cut(s)	45, 170, 401, 1248
NlaIV	GGNNCC	1 cut(s)	1185
NmuCI	GTSAC	4 cut(s)	347, 494, 794, 1224
NspI	RCATGY	1 cut(s)	1248
PaeR7I	CTCGAG	1 cut(s)	1280
PfeI	GAWTC	4 cut(s)	241, 353, 800, 1269
PflFI	GACNNNGTC	1 cut(s)	1222
PfoI	TCCNGGA	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	130
PleI	GAGTC	1 cut(s)	501
PpsI	GAGTC	1 cut(s)	501
Psp1406I	AACGTT	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	463, 498
PspEI	GGTNACC	1 cut(s)	952
PspFI	CCCAGC	2 cut(s)	134, 920
PspGI	CCWGG	2 cut(s)	463, 498
PspN4I	GGNNCC	1 cut(s)	1185
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	2 cut(s)	686, 920
PsyI	GACNNNGTC	1 cut(s)	1222
RsaI	GTAC	3 cut(s)	617, 851, 1172
RsaNI	GTAC	3 cut(s)	616, 850, 1171
SaqAI	TTAA	8 cut(s)	233, 693, 698, 722, 834, 900, 968, 1037
SatI	GCNGC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	1264
Sau96I	GGNCC	1 cut(s)	560
ScaI	AGTACT	1 cut(s)	851
SchI	GAGTC	1 cut(s)	502
ScrFI	CCNGG	2 cut(s)	465, 500
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	2 cut(s)	91, 458
Sfr274I	CTCGAG	1 cut(s)	1280
SlaI	CTCGAG	1 cut(s)	1280
SmlI	CTYRAG	3 cut(s)	525, 934, 1280
SmoI	CTYRAG	3 cut(s)	525, 934, 1280
Sse9I	AATT	7 cut(s)	453, 634, 690, 695, 965, 1044, 1175
SsiI	CCGC	1 cut(s)	126
SspMI	CTAG	2 cut(s)	411, 771
StyD4I	CCNGG	2 cut(s)	463, 498
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	3 cut(s)	156, 666, 1153
TaqI	TCGA	6 cut(s)	14, 84, 156, 434, 1267, 1281
TasI	AATT	7 cut(s)	453, 634, 690, 695, 965, 1044, 1175
TatI	WGTACW	2 cut(s)	849, 1170
TfiI	GAWTC	4 cut(s)	241, 353, 800, 1269
Tru1I	TTAA	8 cut(s)	233, 693, 698, 722, 834, 900, 968, 1037
Tru9I	TTAA	8 cut(s)	233, 693, 698, 722, 834, 900, 968, 1037
TscAI	CASTG	2 cut(s)	607, 999
TseFI	GTSAC	4 cut(s)	347, 494, 794, 1224
TseI	GCWGC	1 cut(s)	128
Tsp45I	GTSAC	4 cut(s)	347, 494, 794, 1224
TspDTI	ATGAA	2 cut(s)	672, 687
TspGWI	ACGGA	1 cut(s)	206
TspRI	CASTG	2 cut(s)	607, 999
Tth111I	GACNNNGTC	1 cut(s)	1222
XapI	RAATTY	1 cut(s)	1175
XceI	RCATGY	1 cut(s)	1248
XhoI	CTCGAG	1 cut(s)	1280
XspI	CTAG	2 cut(s)	411, 771
ZrmI	AGTACT	1 cut(s)	851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.