Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Reverse (-)

26667768 .. 26671498

Gene Structure 3731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1161500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAAGAAAGCCAAGACCTCCAGGAAGGGAAAGAAGGCATGGAGGGCAAACATCAGCACCGATGACATCCACGACTTCTTCGAGCAGTCCACCAAGGACGCTCTTTCCGGCGGCTCTCTTGCCTCCGCCGCCGCCGAGTCCCTCTTCTTCGAAGACAAGTCCAAAGATCTTTCGGTGAAGAGGAAGATTGAAAAACATAGACAGAAAGTACTCCACGTTGAGAGCATGCTACAGAAAAACCCATTTGTACAACCAGTGCATTCTTCGACACAGAAGAAATCCAAGAAAGCACATAAAAAGGTTCCAGAACTGATGGATGGATCTGAATGGAGTCCTAAGGGTTCTGTCTCACATTCTGGCATGGCTGACTTATGGGGATATACAGGTGACGACAACAAAAAAACCAAGAAGATGAAGAAGCCATCAATTATTCCTGCCGTAGAAGTTGAGCCTCCGGGATCCTCATTCAATCCCACATTTGAAAGTCATCAGGAAACATTGGCTCATGCTGTTGCAGAAGAAATGGGGAAAGTCTATAAAAAAGAGCTAGGAGCTCAACCGGTTCCTTTAACCGTTCCTGGGGAGGCTGTTGATGAAGAAGAAATGTATTTTCTCGAGGCAGATGAAGGCACTGATGATGATATGAATCAAGAAAATTTGGATGAGAATGGGGATGCTGCATCCGAGAAAAGGCCTTTAAAAACAAAGAGGGTGACAACAGTCGTCTTAAATAAGAGAGCTAGGCGTAAAGAACAGCTTAAAAAGGAAGCAGAAGCGAGAGAGGCCAAGAAGCTTTCTAAAGAAATTGATGGCTTACCAGATATCATTGAGGAAATAGCTAAAGAGGACGAGGAGAGGCATAAAAGACATCTTCGACAAGTTGTAGCTAAGGAAGAAAAACGAAAGTCATGTCCCCCACGACTGGGAAAGCATAAGTTCGAGCCTGCCCCGATTCAAGTCCTCTTGTCTGAAGAAATAACTGGATCCCTCCGTAAGCTAAAGGGTTGTTCCACCCTTGTCAAGGATCGGTTCAAGAGCCTCGAAAAAAGAGGACTAATCCCACCAAAACCGAACAAAAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

363

Amino Acids

40.77

Weight (kDa)

9.39

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop53	PF07767	8 - 348	2.4e-60	Nop53 (60S ribosomal biogenesis)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	114, 129, 132, 135
AclWI	GGATC	6 cut(s)	331, 456, 469, 981, 994, 1035
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	1 cut(s)	993
AfaI	GTAC	2 cut(s)	213, 252
AfiI	CCNNNNNNNGG	5 cut(s)	582, 693, 925, 926, 1024
AgeI	ACCGGT	1 cut(s)	562
AgsI	TTSAA	5 cut(s)	194, 472, 485, 959, 1036
AjnI	CCWGG	2 cut(s)	23, 580
AluBI	AGCT	8 cut(s)	550, 557, 743, 760, 796, 842, 890, 1000
AluI	AGCT	8 cut(s)	550, 557, 743, 760, 796, 842, 890, 1000
Alw21I	GWGCWC	1 cut(s)	559
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	6 cut(s)	331, 456, 469, 981, 994, 1035
Ama87I	CYCGRG	1 cut(s)	617
AoxI	GGCC	2 cut(s)	695, 786
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	1 cut(s)	658
ArsI	GACNNNNNNTTYG	2 cut(s)	898, 930
AsiGI	ACCGGT	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	3 cut(s)	190, 401, 727
AsuII	TTCGAA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	617
AxyI	CCTNAGG	1 cut(s)	339
BamHI	GGATCC	2 cut(s)	461, 986
BanII	GRGCYC	1 cut(s)	559
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	559
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	4 cut(s)	310, 314, 433, 806
BceAI	ACGGC	1 cut(s)	425
BciT130I	CCWGG	2 cut(s)	25, 582
BcnI	CCSGG	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	2 cut(s)	551, 744
BfmI	CTRYAG	1 cut(s)	233
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	4 cut(s)	115, 132, 135, 681
BlsI	GCNGC	4 cut(s)	116, 133, 136, 682
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	25, 459, 582
BmeT110I	CYCGRG	1 cut(s)	617
BmiI	GGNNCC	4 cut(s)	306, 463, 567, 988
BmrFI	CCNGG	3 cut(s)	25, 459, 582
BmrI	ACTGGG	1 cut(s)	935
BmsI	GCATC	2 cut(s)	667, 692
BmuI	ACTGGG	1 cut(s)	935
BoxI	GACNNNNGTC	1 cut(s)	722
BpiI	GAAGAC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	7
Bpu10I	CCTNAGC	1 cut(s)	891
Bpu14I	TTCGAA	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	459
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	96, 581
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	5 cut(s)	582, 693, 925, 926, 1024
Bse118I	RCCGGY	1 cut(s)	562
Bse1I	ACTGG	3 cut(s)	257, 930, 988
Bse21I	CCTNAGG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	25, 582
BseDI	CCNNGG	2 cut(s)	96, 581
BseGI	GGATG	5 cut(s)	69, 325, 670, 682, 683
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	5 cut(s)	582, 693, 925, 926, 1024
BseNI	ACTGG	3 cut(s)	257, 930, 988
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	2 cut(s)	697, 788
BshTI	ACCGGT	1 cut(s)	562
BsiHKAI	GWGCWC	1 cut(s)	559
BsiHKCI	CYCGRG	1 cut(s)	617
BsiSI	CCGG	3 cut(s)	111, 458, 563
BslFI	GGGAC	2 cut(s)	127, 900
BslI	CCNNNNNNNGG	5 cut(s)	582, 693, 925, 926, 1024
BsmAI	GTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	127, 900
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	2 cut(s)	697, 788
BsoBI	CYCGRG	1 cut(s)	617
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	559
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	5 cut(s)	169, 323, 461, 986, 1027
BspACI	CCGC	4 cut(s)	114, 129, 132, 135
BspANI	GGCC	2 cut(s)	697, 788
BspLI	GGNNCC	4 cut(s)	306, 463, 567, 988
BspPI	GGATC	6 cut(s)	331, 456, 469, 981, 994, 1035
BspT104I	TTCGAA	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	562
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	257, 930, 988
BssAI	RCCGGY	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	96, 581
BssMI	GATC	5 cut(s)	169, 323, 461, 986, 1027
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	2 cut(s)	25, 582
Bst4CI	ACNGT	2 cut(s)	577, 724
Bst6I	CTCTTC	2 cut(s)	152, 176
BstAUI	TGTACA	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	230, 948
BstDEI	CTNAG	2 cut(s)	339, 891
BstENI	CCTNNNNNAGG	1 cut(s)	1022
BstF5I	GGATG	5 cut(s)	69, 325, 670, 682, 683
BstKTI	GATC	5 cut(s)	172, 326, 464, 989, 1030
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	5 cut(s)	169, 323, 461, 986, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 131, 785
BstNI	CCWGG	2 cut(s)	25, 582
BstNSI	RCATGY	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	23, 457, 580
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	4 cut(s)	169, 323, 461, 986
BstYI	RGATCY	4 cut(s)	169, 323, 461, 986
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	2 cut(s)	697, 788
BtsCI	GGATG	5 cut(s)	69, 325, 670, 682, 683
BtsIMutI	CAGTG	2 cut(s)	264, 633
Cac8I	GCNNGC	2 cut(s)	230, 948
Cfr10I	RCCGGY	1 cut(s)	562
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	212, 251
CspAI	ACCGGT	1 cut(s)	562
CviAII	CATG	5 cut(s)	42, 229, 364, 509, 912
CviQI	GTAC	2 cut(s)	212, 251
DdeI	CTNAG	2 cut(s)	339, 891
DpnI	GATC	5 cut(s)	171, 325, 463, 988, 1029
DpnII	GATC	5 cut(s)	169, 323, 461, 986, 1027
DraI	TTTAAA	1 cut(s)	702
Eam1104I	CTCTTC	2 cut(s)	152, 176
EarI	CTCTTC	2 cut(s)	152, 176
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	697
Eco24I	GRGCYC	1 cut(s)	559
Eco32I	GATATC	1 cut(s)	826
Eco53kI	GAGCTC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	993
Eco81I	CCTNAGG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	617
EcoICRI	GAGCTC	1 cut(s)	557
EcoNI	CCTNNNNNAGG	1 cut(s)	1022
EcoRII	CCWGG	2 cut(s)	23, 580
EcoRV	GATATC	1 cut(s)	826
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	45, 232, 367, 512, 915
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	2 cut(s)	127, 900
FatI	CATG	5 cut(s)	41, 228, 363, 508, 911
Fnu4HI	GCNGC	4 cut(s)	115, 132, 135, 681
FokI	GGATG	5 cut(s)	56, 332, 670, 677, 689
FriOI	GRGCYC	1 cut(s)	559
Fsp4HI	GCNGC	4 cut(s)	115, 132, 135, 681
FspBI	CTAG	2 cut(s)	551, 744
GluI	GCNGC	4 cut(s)	115, 132, 135, 681
GsuI	CTGGAG	1 cut(s)	7
HaeIII	GGCC	2 cut(s)	697, 788
HapII	CCGG	3 cut(s)	111, 458, 563
HgaI	GACGC	1 cut(s)	110
Hin1II	CATG	5 cut(s)	45, 232, 367, 512, 915
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	4 cut(s)	140, 334, 649, 955
HpaII	CCGG	3 cut(s)	111, 458, 563
HphI	GGTGA	3 cut(s)	190, 401, 727
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	3 cut(s)	328, 688, 973
Hpy188III	TCNNGA	5 cut(s)	308, 494, 617, 653, 1036
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	3 cut(s)	22, 31, 623
HpyCH4III	ACNGT	2 cut(s)	577, 724
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	3 cut(s)	262, 518, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 131, 785
HpyF3I	CTNAG	2 cut(s)	339, 891
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	45, 232, 367, 512, 915
Kzo9I	GATC	5 cut(s)	169, 323, 461, 986, 1027
LmnI	GCTCC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	2 cut(s)	667, 692
MaeI	CTAG	2 cut(s)	551, 744
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	2 cut(s)	389, 715
MalI	GATC	5 cut(s)	171, 325, 463, 988, 1029
MboI	GATC	5 cut(s)	169, 323, 461, 986, 1027
MflI	RGATCY	4 cut(s)	169, 323, 461, 986
MhlI	GDGCHC	1 cut(s)	559
MluCI	AATT	3 cut(s)	429, 658, 807
MlyI	GAGTC	2 cut(s)	149, 343
MseI	TTAA	4 cut(s)	572, 701, 731, 762
MspI	CCGG	3 cut(s)	111, 458, 563
MspR9I	CCNGG	3 cut(s)	25, 459, 582
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	2 cut(s)	25, 582
MwoI	GCNNNNNNNGC	3 cut(s)	47, 131, 785
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	5 cut(s)	169, 323, 461, 986, 1027
NlaIII	CATG	5 cut(s)	45, 232, 367, 512, 915
NlaIV	GGNNCC	4 cut(s)	306, 463, 567, 988
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	2 cut(s)	389, 715
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	2 cut(s)	649, 955
PfoI	TCCNGGA	2 cut(s)	23, 457
PinAI	ACCGGT	1 cut(s)	562
PkrI	GCNGC	4 cut(s)	116, 133, 136, 682
PleI	GAGTC	2 cut(s)	148, 342
PpsI	GAGTC	2 cut(s)	148, 342
PshAI	GACNNNNGTC	1 cut(s)	722
Psp124BI	GAGCTC	1 cut(s)	559
Psp6I	CCWGG	2 cut(s)	23, 580
PspGI	CCWGG	2 cut(s)	23, 580
PspN4I	GGNNCC	4 cut(s)	306, 463, 567, 988
PsuI	RGATCY	4 cut(s)	169, 323, 461, 986
RsaI	GTAC	2 cut(s)	213, 252
RsaNI	GTAC	2 cut(s)	212, 251
SacI	GAGCTC	1 cut(s)	559
SaqAI	TTAA	4 cut(s)	572, 701, 731, 762
SatI	GCNGC	4 cut(s)	115, 132, 135, 681
Sau3AI	GATC	5 cut(s)	169, 323, 461, 986, 1027
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	2 cut(s)	149, 343
ScrFI	CCNGG	3 cut(s)	25, 459, 582
SduI	GDGCHC	1 cut(s)	559
SfaNI	GCATC	2 cut(s)	667, 692
SfcI	CTRYAG	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	617
SfuI	TTCGAA	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	617
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	3 cut(s)	429, 658, 807
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	4 cut(s)	114, 129, 132, 135
SspMI	CTAG	2 cut(s)	551, 744
SstI	GAGCTC	1 cut(s)	559
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	23, 457, 580
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	577, 724
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	7 cut(s)	84, 153, 269, 618, 877, 942, 1044
TasI	AATT	3 cut(s)	429, 658, 807
TatI	WGTACW	2 cut(s)	211, 250
TauI	GCSGC	3 cut(s)	117, 134, 137
TfiI	GAWTC	2 cut(s)	649, 955
Tru1I	TTAA	4 cut(s)	572, 701, 731, 762
Tru9I	TTAA	4 cut(s)	572, 701, 731, 762
TscAI	CASTG	2 cut(s)	264, 640
TseFI	GTSAC	2 cut(s)	389, 715
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	2 cut(s)	389, 715
TspDTI	ATGAA	4 cut(s)	431, 612, 642, 662
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	2 cut(s)	264, 640
XagI	CCTNNNNNAGG	1 cut(s)	1022
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	617
XspI	CTAG	2 cut(s)	551, 744
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.