Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Forward (+)

47905750 .. 47908788

Gene Structure 3039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0364200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGAAGACGAACAAAGCGACGGTTTTGACGTTTGCTGAGAAATGCAAGAGTATATTGTCTTCGAATTGGCAAGGGCAGCTCAATACCGTCAAGGCTGATGCTAAAGGAAGCAAGGAGGACATTTACACATCGAAGATCAAGTACATATGCAAAAGAGGGAAGCCTTACATTTGGGTACCAGAGAATGAGTTGCATAATGTGAACTTAATTGTTGATGAACGGAGTTCTTTTTCTGTGGCTAATCCCATCCCAGGGCCACTGGCAAGTTTACTTAGATCAATAAAGAAGTTACCAGCTCGAGTTGCTCTGACTGGAGATGTTGTATCTTTAACAGATGAAAAGGCTCAGTCTGCAACAAAAGTCCTTAGAGAAGTCATGCTATCGGAACAGACAGCAATCAGCACGTCTAGTTATACAGTTTCAGGTGTATTAAGTTCTTCTGACCATAGTCGTACATCGCGGAGTGAAAACCTTAAGGATCTCTTGGAAGGGGATGAAAAGTACATAGTTTATAAGTTCAACCAAAGATCATGCATGTACATTGATGGCAATGGAAGCACTCATGACATTGACCAAGAAGATATAGGTGGATCTAAAGCAGATCCGTTAGCTCCTTTATCTGCTAAACTTATTGATGGGATAAATCAGAGTGTAGCAAGACGCAGAGCCCTGATGCTTTTTTGTTTGACATACAAGAATGTCAATGCTAAGGATGCATACATGCTGTCTGTCGATCGCAAGGGATTTGACATATTGAGCAAGGTTGCCGGTCCGTTGTTGAAGGATGGCATTGGTCAGTACCAGTGGAAGGAGTTTAGATTTACTTTGAAGGAAGAGGCACGTGATGTTGAATCATTCTGCAGTCAACTAGTAGAAATGGAAGAGGATGCTGTTAAGGAGGTTTCAAGCCATAGTGGTTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

308

Amino Acids

34.13

Weight (kDa)

8.13

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc65I	GGTACC	1 cut(s)	175
AccB1I	GGYRCC	1 cut(s)	175
AccII	CGCG	1 cut(s)	460
AciI	CCGC	1 cut(s)	460
AclWI	GGATC	3 cut(s)	486, 596, 598
AcvI	CACGTG	1 cut(s)	842
AfaI	GTAC	6 cut(s)	143, 177, 454, 503, 539, 800
AfiI	CCNNNNNNNGG	3 cut(s)	251, 252, 808
AflII	CTTAAG	1 cut(s)	473
AgsI	TTSAA	5 cut(s)	520, 781, 829, 851, 906
AhlI	ACTAGT	1 cut(s)	868
AjiI	CACGTC	1 cut(s)	405
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	3 cut(s)	79, 296, 611
AluI	AGCT	3 cut(s)	79, 296, 611
AlwI	GGATC	3 cut(s)	486, 596, 598
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	76
Asp718I	GGTACC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	254, 770
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	1 cut(s)	770
BanI	GGYRCC	1 cut(s)	175
BanII	GRGCYC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	4 cut(s)	43, 75, 125, 157
BbrPI	CACGTG	1 cut(s)	842
BbsI	GAAGAC	2 cut(s)	11, 51
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	4 cut(s)	254, 539, 629, 779
BciT130I	CCWGG	1 cut(s)	252
BcuI	ACTAGT	1 cut(s)	868
BfaI	CTAG	2 cut(s)	408, 869
BfmI	CTRYAG	1 cut(s)	859
BfrI	CTTAAG	1 cut(s)	473
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	297
BmgBI	CACGTC	1 cut(s)	405
BmgT120I	GGNCC	2 cut(s)	254, 770
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	4 cut(s)	88, 663, 703, 877
BoxI	GACNNNNGTC	1 cut(s)	447
BpiI	GAAGAC	2 cut(s)	11, 51
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	708
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	2 cut(s)	250, 251
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 252, 808
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	3 cut(s)	264, 316, 802
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	250, 251
BseGI	GGATG	5 cut(s)	246, 499, 718, 790, 892
BseLI	CCNNNNNNNGG	3 cut(s)	251, 252, 808
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	27, 359
BseNI	ACTGG	3 cut(s)	264, 316, 802
BseXI	GCAGC	1 cut(s)	88
Bsh1236I	CGCG	1 cut(s)	460
Bsh1285I	CGRYCG	1 cut(s)	736
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	175
BsiEI	CGRYCG	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	1 cut(s)	768
BslI	CCNNNNNNNGG	3 cut(s)	251, 252, 808
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	297
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp1407I	TGTACA	1 cut(s)	537
Bsp143I	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
BspACI	CCGC	1 cut(s)	460
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	28, 358
BspFNI	CGCG	1 cut(s)	460
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	177
BspMAI	CTGCAG	1 cut(s)	863
BspPI	GGATC	3 cut(s)	486, 596, 598
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	537
BsrI	ACTGG	3 cut(s)	264, 316, 802
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	2 cut(s)	250, 251
BssMI	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	22, 88, 418
Bst6I	CTCTTC	2 cut(s)	828, 876
BstAFI	CTTAAG	1 cut(s)	473
BstAUI	TGTACA	1 cut(s)	537
BstBAI	YACGTR	1 cut(s)	842
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	36, 272, 345, 365, 708
BstF5I	GGATG	5 cut(s)	246, 499, 718, 790, 892
BstFNI	CGCG	1 cut(s)	460
BstKTI	GATC	7 cut(s)	138, 278, 481, 530, 593, 604, 736
BstMBI	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
BstMCI	CGRYCG	1 cut(s)	736
BstMWI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 555, 713
BstNI	CCWGG	1 cut(s)	252
BstNSI	RCATGY	2 cut(s)	538, 724
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	859
BstUI	CGCG	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	2 cut(s)	11, 51
BstX2I	RGATCY	3 cut(s)	478, 590, 601
BstYI	RGATCY	3 cut(s)	478, 590, 601
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	405
BtsCI	GGATG	5 cut(s)	246, 499, 718, 790, 892
BtsIMutI	CAGTG	2 cut(s)	257, 809
CciI	TCATGA	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	2 cut(s)	254, 770
CpoI	CGGWCCG	1 cut(s)	770
CseI	GACGC	1 cut(s)	669
Csp6I	GTAC	6 cut(s)	142, 176, 453, 502, 538, 799
CspI	CGGWCCG	1 cut(s)	770
CviAII	CATG	6 cut(s)	376, 531, 535, 563, 721, 924
CviQI	GTAC	6 cut(s)	142, 176, 453, 502, 538, 799
DdeI	CTNAG	5 cut(s)	36, 272, 345, 365, 708
DpnI	GATC	7 cut(s)	137, 277, 480, 529, 592, 603, 735
DpnII	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
Eam1104I	CTCTTC	2 cut(s)	828, 876
EarI	CTCTTC	2 cut(s)	828, 876
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	770
Eco72I	CACGTG	1 cut(s)	842
Eco88I	CYCGRG	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	250
EcoT22I	ATGCAT	2 cut(s)	536, 718
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FatI	CATG	6 cut(s)	375, 530, 534, 562, 720, 923
FauNDI	CATATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	5 cut(s)	233, 506, 725, 797, 899
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	1 cut(s)	77
FspBI	CTAG	2 cut(s)	408, 869
GluI	GCNGC	1 cut(s)	77
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	1 cut(s)	768
HgaI	GACGC	1 cut(s)	669
Hin1II	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
HincII	GTYRAC	1 cut(s)	866
HindII	GTYRAC	1 cut(s)	866
HinfI	GANTC	1 cut(s)	851
HpaII	CCGG	1 cut(s)	768
Hpy166II	GTNNAC	3 cut(s)	202, 269, 866
Hpy188I	TCNGA	4 cut(s)	309, 385, 442, 648
Hpy188III	TCNNGA	1 cut(s)	563
Hpy8I	GTNNAC	3 cut(s)	202, 269, 866
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	4 cut(s)	482, 775, 802, 823
HpyCH4III	ACNGT	3 cut(s)	22, 88, 418
HpyCH4IV	ACGT	3 cut(s)	29, 404, 841
HpyCH4V	TGCA	7 cut(s)	45, 150, 193, 353, 534, 716, 861
HpyF10VI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 555, 713
HpyF3I	CTNAG	5 cut(s)	36, 272, 345, 365, 708
HpySE526I	ACGT	3 cut(s)	29, 404, 841
Hsp92II	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
KpnI	GGTACC	1 cut(s)	179
Kzo9I	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
LmnI	GCTCC	1 cut(s)	616
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	4 cut(s)	88, 663, 703, 877
MaeI	CTAG	2 cut(s)	408, 869
MaeII	ACGT	3 cut(s)	29, 404, 841
MaeIII	GTNAC	1 cut(s)	288
MalI	GATC	7 cut(s)	137, 277, 480, 529, 592, 603, 735
MboI	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
MboII	GAAGA	7 cut(s)	16, 51, 145, 429, 590, 845, 893
MflI	RGATCY	3 cut(s)	478, 590, 601
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	2 cut(s)	64, 207
MnlI	CCTC	5 cut(s)	109, 149, 829, 877, 892
Mph1103I	ATGCAT	2 cut(s)	536, 718
MseI	TTAA	5 cut(s)	206, 329, 431, 474, 894
MspCI	CTTAAG	1 cut(s)	473
MspI	CCGG	1 cut(s)	768
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
MvnI	CGCG	1 cut(s)	460
MwoI	GCNNNNNNNGC	5 cut(s)	76, 302, 350, 555, 713
NdeI	CATATG	1 cut(s)	146
NdeII	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
NlaIII	CATG	6 cut(s)	379, 534, 538, 566, 724, 927
NlaIV	GGNNCC	1 cut(s)	177
NsiI	ATGCAT	2 cut(s)	536, 718
NspI	RCATGY	2 cut(s)	538, 724
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	297
PagI	TCATGA	1 cut(s)	562
PasI	CCCWGGG	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 26
PfeI	GAWTC	1 cut(s)	851
PkrI	GCNGC	1 cut(s)	78
Ple19I	CGATCG	1 cut(s)	736
PmaCI	CACGTG	1 cut(s)	842
PmlI	CACGTG	1 cut(s)	842
Ppu21I	YACGTR	1 cut(s)	842
PshAI	GACNNNNGTC	1 cut(s)	447
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	250
PspCI	CACGTG	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	2 cut(s)	254, 770
PspXI	VCTCGAGB	1 cut(s)	297
PstI	CTGCAG	1 cut(s)	863
PsuI	RGATCY	3 cut(s)	478, 590, 601
PvuI	CGATCG	1 cut(s)	736
RsaI	GTAC	6 cut(s)	143, 177, 454, 503, 539, 800
RsaNI	GTAC	6 cut(s)	142, 176, 453, 502, 538, 799
Rsr2I	CGGWCCG	1 cut(s)	770
RsrII	CGGWCCG	1 cut(s)	770
SaqAI	TTAA	5 cut(s)	206, 329, 431, 474, 894
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	7 cut(s)	135, 275, 478, 527, 590, 601, 733
Sau96I	GGNCC	2 cut(s)	254, 770
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	4 cut(s)	88, 663, 703, 877
SfcI	CTRYAG	1 cut(s)	859
Sfr274I	CTCGAG	1 cut(s)	297
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	770
SlaI	CTCGAG	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	297, 473
SmoI	CTYRAG	2 cut(s)	297, 473
SpeI	ACTAGT	1 cut(s)	868
Sse9I	AATT	2 cut(s)	64, 207
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	408, 869
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	3 cut(s)	22, 88, 418
TaiI	ACGT	3 cut(s)	32, 407, 844
TaqI	TCGA	4 cut(s)	62, 131, 298, 732
TasI	AATT	2 cut(s)	64, 207
TatI	WGTACW	3 cut(s)	141, 501, 537
TfiI	GAWTC	1 cut(s)	851
Tru1I	TTAA	5 cut(s)	206, 329, 431, 474, 894
Tru9I	TTAA	5 cut(s)	206, 329, 431, 474, 894
TscAI	CASTG	2 cut(s)	264, 809
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	4 cut(s)	17, 231, 351, 510
TspGWI	ACGGA	3 cut(s)	235, 594, 762
TspRI	CASTG	2 cut(s)	264, 809
Vha464I	CTTAAG	1 cut(s)	473
VpaK11BI	GGWCC	1 cut(s)	770
XceI	RCATGY	2 cut(s)	538, 724
XhoI	CTCGAG	1 cut(s)	297
XspI	CTAG	2 cut(s)	408, 869
Zsp2I	ATGCAT	2 cut(s)	536, 718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.