Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Reverse (-)

30436609 .. 30440327

Gene Structure 3719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1229400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAAGAAGGCCAAGACCTCCAGGAAGGGGAAGAAGGCATGGAGGGCTAACATCAGCACTGATGACATCCACGATTTCTTCGAGCAGTCCACCAAGGACGCCCTCTCCGGCGGCTCTCTCGCCTCCGCCCCCGCCGAGTCCCTCTTCTTCGAAGACAAGTCCAAAGATCTTTCGGTGAAGAGGAAGATTGAAAAGCACAGACAGAAAGTACTCCATGTTGAGAGCATGCTACAGAAAAACCCATTTGTACAACCAGTGCCTTCTTCAACTCTGAAGAAATCTAAGAAAGCACATAAAAAGGTTCCAGAACTAATAGATGAATCTGAATGGAGTCCTGAGCGTTCTGTCTCATCTTCTGGCATGGCTGACTTATGGGGCTATACAGGTGATGACAACAAAAAAACCAAGAAGACGAGGAAGCCATCAATTATTCCTGCTGTAGAAGTTGAGCCTCCAGGATCCTCATTCAATCCCACATTTGAAAGTCATCAGGAAACATTGGCTCATGCTGTTGCAGAAGAAATGGGGAAAGTCTATAAAAAAGAGCTTGGACCTCAACCAGTTCCTCTAACTGTTCCTGGAGAGGCTGTTGACGAAGAAGAAATGTATTTTCTTGAGGCAGATGAAGGCAGTGATGACAATATGAATCCAGAAAATTTGGATGAGAATGGGGATGCTGCATCCGAGAAAATGCCTTTAAAAACAAAGAGGGTGACAACAGTTGTATTAAATAAGAGAGCTAGGCGTAAAGAACAGCTTAAAAAGGAAGCAGAAGCGAGACAGGCGAAGCAGCTTTCCAAAGAAATTGATGGCTTACCAGATATCATTCAAGAAATAGCGAAAGAGGATGAGGAGAGGCATAAAAGACATCTTCGACGAGTTGTAGCTAAACAAGAAAAACTCAAGTCATGTCCCCCACGATTGGGGAAGCATAAGTTCGAGCCTGCCCCAGTTCAAGTCCTCTTGACTGAAGAGATATCAGGATCCATCCGGAAGCTTAAGGGTTGTTGCACCCTTGTCAATGATAGGTTCAAGAGCCTCGAAAAAAGAGGACTAATCCCGCCAAAAGCGAACAAAAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

363

Amino Acids

40.75

Weight (kDa)

9.35

Isoelectric Point (pI)

60.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop53	PF07767	8 - 348	1.9e-58	Nop53 (60S ribosomal biogenesis)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	993
AciI	CCGC	4 cut(s)	114, 129, 135, 1064
AclWI	GGATC	4 cut(s)	456, 469, 981, 994
AcsI	RAATTY	1 cut(s)	658
AcuI	CTGAAG	2 cut(s)	296, 993
AcyI	GRCGYC	1 cut(s)	102
AfaI	GTAC	2 cut(s)	213, 252
AfiI	CCNNNNNNNGG	3 cut(s)	30, 925, 926
AflII	CTTAAG	1 cut(s)	1001
AgsI	TTSAA	7 cut(s)	194, 270, 472, 485, 833, 959, 1036
AjnI	CCWGG	3 cut(s)	23, 457, 580
AluBI	AGCT	6 cut(s)	550, 743, 760, 796, 890, 1000
AluI	AGCT	6 cut(s)	550, 743, 760, 796, 890, 1000
Alw26I	GTCTC	2 cut(s)	355, 775
AlwI	GGATC	4 cut(s)	456, 469, 981, 994
Aor13HI	TCCGGA	1 cut(s)	993
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	680, 793
ApoI	RAATTY	1 cut(s)	658
AspS9I	GGNCC	1 cut(s)	554
AsuHPI	GGTGA	3 cut(s)	190, 401, 727
AsuII	TTCGAA	1 cut(s)	153
AvaII	GGWCC	1 cut(s)	554
BamHI	GGATCC	2 cut(s)	461, 986
BbsI	GAAGAC	2 cut(s)	162, 419
BbvI	GCAGC	2 cut(s)	667, 805
BccI	CCATC	3 cut(s)	433, 806, 998
BciT130I	CCWGG	3 cut(s)	25, 459, 582
BcoDI	GTCTC	2 cut(s)	355, 775
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	2 cut(s)	233, 441
BfrI	CTTAAG	1 cut(s)	1001
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	3 cut(s)	115, 681, 794
BlsI	GCNGC	3 cut(s)	116, 682, 795
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	25, 459, 582
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	3 cut(s)	306, 463, 988
BmrFI	CCNGG	3 cut(s)	25, 459, 582
BmrI	ACTGGG	1 cut(s)	947
BmsI	GCATC	2 cut(s)	667, 692
BmuI	ACTGGG	1 cut(s)	947
BpiI	GAAGAC	2 cut(s)	162, 419
BpmI	CTGGAG	3 cut(s)	7, 441, 603
Bpu10I	CCTNAGC	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	638, 890
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	993
BsaXI	ACNNNNNCTCC	4 cut(s)	92, 122, 576, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 925, 926
Bse1I	ACTGG	3 cut(s)	257, 563, 953
BseAI	TCCGGA	1 cut(s)	993
BseBI	CCWGG	3 cut(s)	25, 459, 582
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	6 cut(s)	69, 670, 682, 683, 856, 990
BseLI	CCNNNNNNNGG	3 cut(s)	30, 925, 926
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	3 cut(s)	257, 563, 953
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	2 cut(s)	667, 805
BshFI	GGCC	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	111, 994
BslFI	GGGAC	2 cut(s)	127, 900
BslI	CCNNNNNNNGG	3 cut(s)	30, 925, 926
BsmAI	GTCTC	2 cut(s)	355, 775
BsmFI	GGGAC	2 cut(s)	127, 900
BsnI	GGCC	1 cut(s)	14
Bsp119I	TTCGAA	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	993
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	169, 461, 986
BspACI	CCGC	4 cut(s)	114, 129, 135, 1064
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	331
BspEI	TCCGGA	1 cut(s)	993
BspLI	GGNNCC	3 cut(s)	306, 463, 988
BspPI	GGATC	4 cut(s)	456, 469, 981, 994
BspT104I	TTCGAA	1 cut(s)	153
BspTI	CTTAAG	1 cut(s)	1001
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	257, 563, 953
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	3 cut(s)	169, 461, 986
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	96
Bst2UI	CCWGG	3 cut(s)	25, 459, 582
Bst4CI	ACNGT	2 cut(s)	577, 724
Bst6I	CTCTTC	3 cut(s)	152, 176, 969
BstACI	GRCGYC	1 cut(s)	102
BstAFI	CTTAAG	1 cut(s)	1001
BstAUI	TGTACA	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	230, 948
BstDEI	CTNAG	2 cut(s)	285, 339
BstF5I	GGATG	6 cut(s)	69, 670, 682, 683, 856, 990
BstKTI	GATC	3 cut(s)	172, 464, 989
BstMAI	GTCTC	2 cut(s)	355, 775
BstMBI	GATC	3 cut(s)	169, 461, 986
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 785
BstNI	CCWGG	3 cut(s)	25, 459, 582
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	3 cut(s)	23, 457, 580
BstSFI	CTRYAG	2 cut(s)	233, 441
BstV1I	GCAGC	2 cut(s)	667, 805
BstV2I	GAAGAC	2 cut(s)	162, 419
BstX2I	RGATCY	3 cut(s)	169, 461, 986
BstYI	RGATCY	3 cut(s)	169, 461, 986
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	6 cut(s)	69, 670, 682, 683, 856, 990
BtsI	GCAGTG	1 cut(s)	640
BtsIMutI	CAGTG	3 cut(s)	60, 264, 640
Cac8I	GCNNGC	2 cut(s)	230, 948
Cfr13I	GGNCC	1 cut(s)	554
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	212, 251
CviAII	CATG	6 cut(s)	42, 218, 229, 364, 509, 912
CviQI	GTAC	2 cut(s)	212, 251
DdeI	CTNAG	2 cut(s)	285, 339
DpnI	GATC	3 cut(s)	171, 463, 988
DpnII	GATC	3 cut(s)	169, 461, 986
DraI	TTTAAA	1 cut(s)	702
Eam1104I	CTCTTC	3 cut(s)	152, 176, 969
EarI	CTCTTC	3 cut(s)	152, 176, 969
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	96
Eco32I	GATATC	2 cut(s)	826, 981
Eco47I	GGWCC	1 cut(s)	554
Eco57I	CTGAAG	2 cut(s)	296, 993
EcoRII	CCWGG	3 cut(s)	23, 457, 580
EcoRV	GATATC	2 cut(s)	826, 981
EcoT14I	CCWWGG	1 cut(s)	96
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	6 cut(s)	45, 221, 232, 367, 512, 915
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FaqI	GGGAC	2 cut(s)	127, 900
FatI	CATG	6 cut(s)	41, 217, 228, 363, 508, 911
FauI	CCCGC	2 cut(s)	142, 1071
Fnu4HI	GCNGC	3 cut(s)	115, 681, 794
FokI	GGATG	6 cut(s)	56, 670, 677, 689, 863, 977
Fsp4HI	GCNGC	3 cut(s)	115, 681, 794
FspBI	CTAG	1 cut(s)	744
GluI	GCNGC	3 cut(s)	115, 681, 794
GsuI	CTGGAG	3 cut(s)	7, 441, 603
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	2 cut(s)	111, 994
HgaI	GACGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	6 cut(s)	45, 221, 232, 367, 512, 915
HincII	GTYRAC	1 cut(s)	595
HindII	GTYRAC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	998
HinfI	GANTC	4 cut(s)	140, 323, 334, 649
HpaII	CCGG	2 cut(s)	111, 994
HphI	GGTGA	3 cut(s)	190, 401, 727
Hpy166II	GTNNAC	2 cut(s)	93, 595
Hpy188I	TCNGA	3 cut(s)	276, 328, 688
Hpy8I	GTNNAC	2 cut(s)	93, 595
Hpy99I	CGWCG	1 cut(s)	882
HpyAV	CCTTC	5 cut(s)	4, 22, 31, 273, 623
HpyCH4III	ACNGT	2 cut(s)	577, 724
HpyCH4V	TGCA	3 cut(s)	518, 683, 1014
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 785
HpyF3I	CTNAG	2 cut(s)	285, 339
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	6 cut(s)	45, 221, 232, 367, 512, 915
Kpn2I	TCCGGA	1 cut(s)	993
Kzo9I	GATC	3 cut(s)	169, 461, 986
Lsp1109I	GCAGC	2 cut(s)	667, 805
LweI	GCATC	2 cut(s)	667, 692
MaeI	CTAG	1 cut(s)	744
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	3 cut(s)	171, 463, 988
MboI	GATC	3 cut(s)	169, 461, 986
MflI	RGATCY	3 cut(s)	169, 461, 986
MluCI	AATT	3 cut(s)	429, 658, 807
MlyI	GAGTC	2 cut(s)	149, 343
MroI	TCCGGA	1 cut(s)	993
MseI	TTAA	4 cut(s)	701, 731, 762, 1002
MspCI	CTTAAG	1 cut(s)	1001
MspI	CCGG	2 cut(s)	111, 994
MspR9I	CCNGG	3 cut(s)	25, 459, 582
MvaI	CCWGG	3 cut(s)	25, 459, 582
MwoI	GCNNNNNNNGC	2 cut(s)	47, 785
NdeII	GATC	3 cut(s)	169, 461, 986
NlaIII	CATG	6 cut(s)	45, 221, 232, 367, 512, 915
NlaIV	GGNNCC	3 cut(s)	306, 463, 988
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	1 cut(s)	232
NspV	TTCGAA	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PfeI	GAWTC	2 cut(s)	323, 649
PfoI	TCCNGGA	3 cut(s)	23, 457, 580
PkrI	GCNGC	3 cut(s)	116, 682, 795
PleI	GAGTC	2 cut(s)	148, 342
PpsI	GAGTC	2 cut(s)	148, 342
Psp6I	CCWGG	3 cut(s)	23, 457, 580
PspGI	CCWGG	3 cut(s)	23, 457, 580
PspN4I	GGNNCC	3 cut(s)	306, 463, 988
PspPI	GGNCC	1 cut(s)	554
PsuI	RGATCY	3 cut(s)	169, 461, 986
RsaI	GTAC	2 cut(s)	213, 252
RsaNI	GTAC	2 cut(s)	212, 251
SaqAI	TTAA	4 cut(s)	701, 731, 762, 1002
SatI	GCNGC	3 cut(s)	115, 681, 794
Sau3AI	GATC	3 cut(s)	169, 461, 986
Sau96I	GGNCC	1 cut(s)	554
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	2 cut(s)	149, 343
ScrFI	CCNGG	3 cut(s)	25, 459, 582
SfaNI	GCATC	2 cut(s)	667, 692
SfcI	CTRYAG	2 cut(s)	233, 441
SfuI	TTCGAA	1 cut(s)	153
SinI	GGWCC	1 cut(s)	554
SmlI	CTYRAG	3 cut(s)	617, 905, 1001
SmoI	CTYRAG	3 cut(s)	617, 905, 1001
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	3 cut(s)	429, 658, 807
SsiI	CCGC	4 cut(s)	114, 129, 135, 1064
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	3 cut(s)	23, 457, 580
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	577, 724
TaqI	TCGA	5 cut(s)	84, 153, 877, 942, 1044
TasI	AATT	3 cut(s)	429, 658, 807
TatI	WGTACW	2 cut(s)	211, 250
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	2 cut(s)	323, 649
Tru1I	TTAA	4 cut(s)	701, 731, 762, 1002
Tru9I	TTAA	4 cut(s)	701, 731, 762, 1002
TscAI	CASTG	3 cut(s)	67, 264, 640
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	2 cut(s)	680, 793
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	3 cut(s)	336, 642, 662
TspRI	CASTG	3 cut(s)	67, 264, 640
Vha464I	CTTAAG	1 cut(s)	1001
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	658
XceI	RCATGY	1 cut(s)	232
XspI	CTAG	1 cut(s)	744
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.