Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Reverse (-)

26975557 .. 26979341

Gene Structure 3785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAAGAAAGCGAAGACATCTAGAAAGGGAAAGAAGGCATGGAGAACCAACATAAGCACAGAAGACATTCATGACTTCTTCGAGCAGTCAACCAAAGATGCTCTCTCCGGTGGTTCTCTTTCCTCTGCTCCCGCCGAGTCACTCTTCTTCGTCGACAAGTCCAAAGATCTTTCGGTGAAGAGGAAGATTGAAAAACATAGACAGAAAGTACTCCATGTTGAGAGCATGCTACAGAAAAACCCATTTGTACAAGCGGTGCCTTCTTCGACTCTGAAGAAATCGAAGAAAACACTTAAAGAGGTTCCAAAGCCAAAAGATGCGACTGAATGTGGTCCTCAGGGTTCTGTCTCAACTTCGGGCATGGCTGACTTATGGGGTGATAAAGGTGGTGACAACAGCAAGACCAAGAAGACGGCGAAACCATCACTTATTCCTGCCGTAGAAGTTGAGCCTCCAGGATCCTCATTCAATCCCACATTTGAAAGTCACCAGGAAACATTGGCTCATGCTGTTGCACAAGAAATGCACAAAGTCTATAAAAAAGAGTTAGGACCTCAACCAGTTCCTCTAACTGTTCCTGGGGAGGCTGTTGATGAAGAAGAAATGTATTTTCTCGATGCTGATGAAGGCACTGATGATGATATGAATCCAGAAAATTTGGATGAGAATGAGGATGCTGCATCTGAGAAAAGGCCTCTTAAAACAAAGAGGGTGACAACAGTCATGTTAAATAAGAGAGCTAGGCGTAAAGAACAGCTTAAAAAGGAAGCAGAAGCGAAAAAGGCACAGAAGCTTTCCAAAGAAATTGATGGCTTACCAGATATTCTTCAGGAAATAGCTAAAGAGGACGATGAGAAGCATAAAAGACATATTCGACGAGTTGTAGCCAAAAAAGAGAAACTAAAGTCATGCCCCCCACGCTTGGGGAAGCACAAATTCGAGCCTGCCCCAGTTCAAGTCCTCTTGACTGAAGAAATAACTGGATCCCTTCGGAAACTGAAGGGTTGTTGTACCCTTGTCAAGGATCGGTTCAAGAGCCTAGAAAAAAGAGGATTAATCCCGCCAAAATTAAACAAAAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

363

Amino Acids

40.52

Weight (kDa)

9.49

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	156
AciI	CCGC	3 cut(s)	135, 257, 1064
AclWI	GGATC	5 cut(s)	456, 469, 981, 994, 1035
AcsI	RAATTY	2 cut(s)	658, 938
AcuI	CTGAAG	4 cut(s)	296, 815, 993, 1022
AfaI	GTAC	3 cut(s)	213, 252, 1015
AfiI	CCNNNNNNNGG	3 cut(s)	925, 926, 1024
AgsI	TTSAA	5 cut(s)	194, 472, 485, 959, 1036
AjnI	CCWGG	3 cut(s)	457, 492, 580
AluBI	AGCT	4 cut(s)	743, 760, 796, 842
AluI	AGCT	4 cut(s)	743, 760, 796, 842
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	5 cut(s)	456, 469, 981, 994, 1035
AoxI	GGCC	1 cut(s)	695
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	2 cut(s)	658, 938
AseI	ATTAAT	1 cut(s)	1058
Asp700I	GAANNNNTTC	1 cut(s)	69
AspS9I	GGNCC	2 cut(s)	335, 554
AsuHPI	GGTGA	5 cut(s)	190, 392, 404, 482, 727
AvaII	GGWCC	2 cut(s)	335, 554
AxyI	CCTNAGG	1 cut(s)	339
BamHI	GGATCC	2 cut(s)	461, 986
BanI	GGYRCC	1 cut(s)	259
BbsI	GAAGAC	3 cut(s)	23, 72, 419
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	2 cut(s)	433, 806
BceAI	ACGGC	2 cut(s)	425, 432
BciT130I	CCWGG	3 cut(s)	459, 494, 582
BcoDI	GTCTC	1 cut(s)	355
BfaI	CTAG	3 cut(s)	24, 744, 1043
BfmI	CTRYAG	1 cut(s)	233
BglII	AGATCT	1 cut(s)	169
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
BmcAI	AGTACT	1 cut(s)	213
Bme1390I	CCNGG	3 cut(s)	459, 494, 582
Bme18I	GGWCC	2 cut(s)	335, 554
BmgT120I	GGNCC	2 cut(s)	335, 554
BmiI	GGNNCC	4 cut(s)	261, 306, 463, 988
BmrFI	CCNGG	3 cut(s)	459, 494, 582
BmrI	ACTGGG	1 cut(s)	947
BmsI	GCATC	5 cut(s)	91, 310, 610, 667, 692
BmuI	ACTGGG	1 cut(s)	947
BoxI	GACNNNNGTC	1 cut(s)	722
BpiI	GAAGAC	3 cut(s)	23, 72, 419
BpmI	CTGGAG	1 cut(s)	441
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	581
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	3 cut(s)	925, 926, 1024
Bse1I	ACTGG	3 cut(s)	563, 953, 988
Bse21I	CCTNAGG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	3 cut(s)	459, 494, 582
BseDI	CCNNGG	1 cut(s)	581
BseGI	GGATG	2 cut(s)	670, 682
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	3 cut(s)	925, 926, 1024
BseMII	CTCAG	2 cut(s)	353, 678
BseNI	ACTGG	3 cut(s)	563, 953, 988
BseXI	GCAGC	1 cut(s)	667
BshFI	GGCC	1 cut(s)	697
BshNI	GGYRCC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	111
BslI	CCNNNNNNNGG	3 cut(s)	925, 926, 1024
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	697
Bsp1407I	TGTACA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	169, 461, 986, 1027
BspACI	CCGC	3 cut(s)	135, 257, 1064
BspANI	GGCC	1 cut(s)	697
BspCNI	CTCAG	2 cut(s)	352, 679
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	4 cut(s)	261, 306, 463, 988
BspPI	GGATC	5 cut(s)	456, 469, 981, 994, 1035
BspT107I	GGYRCC	1 cut(s)	259
BsrGI	TGTACA	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	563, 953, 988
BssECI	CCNNGG	1 cut(s)	581
BssMI	GATC	4 cut(s)	169, 461, 986, 1027
Bst2UI	CCWGG	3 cut(s)	459, 494, 582
Bst4CI	ACNGT	2 cut(s)	577, 724
Bst6I	CTCTTC	2 cut(s)	152, 176
BstAUI	TGTACA	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	230, 948
BstDEI	CTNAG	2 cut(s)	339, 687
BstENI	CCTNNNNNAGG	1 cut(s)	1022
BstF5I	GGATG	2 cut(s)	670, 682
BstKTI	GATC	4 cut(s)	172, 464, 989, 1030
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	4 cut(s)	169, 461, 986, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	785, 921
BstNI	CCWGG	3 cut(s)	459, 494, 582
BstNSI	RCATGY	1 cut(s)	232
BstPAI	GACNNNNGTC	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	457, 492, 580
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	3 cut(s)	23, 72, 419
BstX2I	RGATCY	3 cut(s)	169, 461, 986
BstYI	RGATCY	3 cut(s)	169, 461, 986
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	1 cut(s)	697
BtsCI	GGATG	2 cut(s)	670, 682
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	2 cut(s)	230, 948
CciI	TCATGA	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	335, 554
Csp6I	GTAC	3 cut(s)	212, 251, 1014
CviAII	CATG	8 cut(s)	42, 74, 218, 229, 364, 509, 727, 912
CviQI	GTAC	3 cut(s)	212, 251, 1014
DdeI	CTNAG	2 cut(s)	339, 687
DpnI	GATC	4 cut(s)	171, 463, 988, 1029
DpnII	GATC	4 cut(s)	169, 461, 986, 1027
Eam1104I	CTCTTC	2 cut(s)	152, 176
EarI	CTCTTC	2 cut(s)	152, 176
Eco147I	AGGCCT	1 cut(s)	697
Eco47I	GGWCC	2 cut(s)	335, 554
Eco57I	CTGAAG	4 cut(s)	296, 815, 993, 1022
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	1022
EcoO109I	RGGNCCY	1 cut(s)	554
EcoRII	CCWGG	3 cut(s)	457, 492, 580
FaeI	CATG	8 cut(s)	45, 77, 221, 232, 367, 512, 730, 915
FalI	AAGNNNNNCTT	2 cut(s)	744, 776
FatI	CATG	8 cut(s)	41, 73, 217, 228, 363, 508, 726, 911
FauI	CCCGC	2 cut(s)	142, 1071
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	2 cut(s)	677, 689
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	3 cut(s)	24, 744, 1043
GluI	GCNGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	697
HapII	CCGG	1 cut(s)	111
Hin1II	CATG	8 cut(s)	45, 77, 221, 232, 367, 512, 730, 915
HincII	GTYRAC	2 cut(s)	93, 157
HindII	GTYRAC	2 cut(s)	93, 157
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	3 cut(s)	140, 271, 649
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	5 cut(s)	190, 392, 404, 482, 727
Hpy166II	GTNNAC	2 cut(s)	93, 157
Hpy188I	TCNGA	3 cut(s)	276, 688, 996
Hpy188III	TCNNGA	7 cut(s)	24, 74, 617, 653, 833, 967, 1036
Hpy8I	GTNNAC	2 cut(s)	93, 157
Hpy99I	CGWCG	2 cut(s)	158, 882
HpyAV	CCTTC	5 cut(s)	31, 273, 623, 997, 1001
HpyCH4III	ACNGT	2 cut(s)	577, 724
HpyCH4V	TGCA	3 cut(s)	518, 529, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	785, 921
HpyF3I	CTNAG	2 cut(s)	339, 687
Hsp92II	CATG	8 cut(s)	45, 77, 221, 232, 367, 512, 730, 915
Kzo9I	GATC	4 cut(s)	169, 461, 986, 1027
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	5 cut(s)	91, 310, 610, 667, 692
MaeI	CTAG	3 cut(s)	24, 744, 1043
MaeIII	GTNAC	4 cut(s)	141, 392, 488, 715
MalI	GATC	4 cut(s)	171, 463, 988, 1029
MboI	GATC	4 cut(s)	169, 461, 986, 1027
MflI	RGATCY	3 cut(s)	169, 461, 986
MluCI	AATT	4 cut(s)	658, 807, 938, 1070
MlyI	GAGTC	2 cut(s)	149, 265
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	6 cut(s)	297, 702, 731, 762, 1058, 1073
MspI	CCGG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	459, 494, 582
MvaI	CCWGG	3 cut(s)	459, 494, 582
MwoI	GCNNNNNNNGC	2 cut(s)	785, 921
NdeII	GATC	4 cut(s)	169, 461, 986, 1027
NlaIII	CATG	8 cut(s)	45, 77, 221, 232, 367, 512, 730, 915
NlaIV	GGNNCC	4 cut(s)	261, 306, 463, 988
NmeAIII	GCCGAG	1 cut(s)	163
NmuCI	GTSAC	4 cut(s)	141, 392, 488, 715
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
PagI	TCATGA	1 cut(s)	73
PceI	AGGCCT	1 cut(s)	697
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	649
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	2 cut(s)	148, 265
PpsI	GAGTC	2 cut(s)	148, 265
PpuMI	RGGWCCY	1 cut(s)	554
PshAI	GACNNNNGTC	1 cut(s)	722
PshBI	ATTAAT	1 cut(s)	1058
Psp5II	RGGWCCY	1 cut(s)	554
Psp6I	CCWGG	3 cut(s)	457, 492, 580
PspGI	CCWGG	3 cut(s)	457, 492, 580
PspN4I	GGNNCC	4 cut(s)	261, 306, 463, 988
PspPI	GGNCC	2 cut(s)	335, 554
PspPPI	RGGWCCY	1 cut(s)	554
PsuI	RGATCY	3 cut(s)	169, 461, 986
RsaI	GTAC	3 cut(s)	213, 252, 1015
RsaNI	GTAC	3 cut(s)	212, 251, 1014
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	6 cut(s)	297, 702, 731, 762, 1058, 1073
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	4 cut(s)	169, 461, 986, 1027
Sau96I	GGNCC	2 cut(s)	335, 554
ScaI	AGTACT	1 cut(s)	213
SchI	GAGTC	2 cut(s)	149, 265
ScrFI	CCNGG	3 cut(s)	459, 494, 582
SetI	ASST	7 cut(s)	306, 391, 559, 745, 762, 798, 844
SfaNI	GCATC	5 cut(s)	91, 310, 610, 667, 692
SfcI	CTRYAG	1 cut(s)	233
SinI	GGWCC	2 cut(s)	335, 554
SphI	GCATGC	1 cut(s)	232
Sse9I	AATT	4 cut(s)	658, 807, 938, 1070
SseBI	AGGCCT	1 cut(s)	697
SsiI	CCGC	3 cut(s)	135, 257, 1064
SspMI	CTAG	3 cut(s)	24, 744, 1043
StuI	AGGCCT	1 cut(s)	697
StyD4I	CCNGG	3 cut(s)	457, 492, 580
TaaI	ACNGT	2 cut(s)	577, 724
TaqI	TCGA	7 cut(s)	84, 156, 269, 284, 618, 877, 942
TasI	AATT	4 cut(s)	658, 807, 938, 1070
TatI	WGTACW	2 cut(s)	211, 250
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	6 cut(s)	297, 702, 731, 762, 1058, 1073
Tru9I	TTAA	6 cut(s)	297, 702, 731, 762, 1058, 1073
TscAI	CASTG	1 cut(s)	640
TseFI	GTSAC	4 cut(s)	141, 392, 488, 715
TseI	GCWGC	1 cut(s)	680
Tsp45I	GTSAC	4 cut(s)	141, 392, 488, 715
TspDTI	ATGAA	4 cut(s)	62, 612, 642, 662
TspRI	CASTG	1 cut(s)	640
VpaK11BI	GGWCC	2 cut(s)	335, 554
VspI	ATTAAT	1 cut(s)	1058
XagI	CCTNNNNNAGG	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	658, 938
XbaI	TCTAGA	1 cut(s)	23
XceI	RCATGY	1 cut(s)	232
XmiI	GTMKAC	1 cut(s)	156
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	3 cut(s)	24, 744, 1043
ZrmI	AGTACT	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.