Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Reverse (-)

19442303 .. 19446106

Gene Structure 3804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25510.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGGAAGAAAGCGAAGACGTCTCGGAAGGGAAAGAAGGCGTGGAGAGCCAACATAAGCACGGAAGACATCCACGACTTCTTCGAGAAATCAACCAAAGACGCTCTTTCCGGCGGCAATCTCTCCCAGGCTCCCGATGAAGCTCTCTTCTTCGTCGACAACTCCAAAGATATTTCGGTGAAGAGGAAGATTGAAAAGCACAGAGAGAAAGTACTTCACATGGACAGCGTGCTACAGAAAAATCCATTTGTAAAAGCAGTGCATTCTTCGACGCTAAAGAAGTCCAAGAAAAAACGCAAACAGATCACAAATGCCAAAGATGCCACTGAATGCGGCCCTGAGGGTTCTGTCTCAACTTCTGGCATGTCTGATCTATGGAGTGATAAAGGTGGTGCCAACCATGTGGTCAAGAAGAAAATGAAGCCTTCACCTATTCCTGCTGTAGAAGTTGAGCCTCCAGGTTGCTCATATAATCCTACAGATGAAAGTCATCAGGAAGCATTGGCTCATGCTGTTGCAGATGAAATGCAAAAAGTCTATAGAAATGAGTTGGGGCCTGAACCAGTGCCTCTAACTGTTCCAGGGGAGGCTATTGATGAAGAAGAAATGTATTTTATTGAAGCAGATGAAGGCAGTGATGATGACATGAATCCAGAAAATTTGGATGATAATGAGGGTGGTGCATCTGAGAAAAGGCCCTTTAGAACAAAGAGGGTGACAACAGTCGAATTAAATAAGAGAGCTAGGCGTAAGGAACAGCTGAAAAGGGAAGCAGAAGTGAAAAAGGTGCAGAAACTTTCCAAAGAAATTGATAGCTTACCAGATATCATTCAGGAAATAGCTAAAGAGGATGAGGAGAAGCAAAAAAGACATCTTCGACATGTTGTAGCTACAAATGAAAAATCCAAGTCATGTCCCCCGCGCTTGGGGAGGCACAAATTTGAACCTGCCCCTGTTCAAGTACTTTTGACTGAAGAAAGAACCGGATCCATCCGCAAACTGAAGGGTTGCTGCACCCTTGTCAAGGATCGTTACAAGAGTTTTGAAAAAAGAGGATTAATCCCAGTAAAGGCCAACAAAAGGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

363

Amino Acids

40.83

Weight (kDa)

9.28

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop53	PF07767	8 - 336	1.4e-53	Nop53 (60S ribosomal biogenesis)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	23
Acc36I	ACCTGC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	392
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	1 cut(s)	922
AciI	CCGC	4 cut(s)	114, 333, 920, 994
AclWI	GGATC	3 cut(s)	981, 994, 1035
AcsI	RAATTY	2 cut(s)	658, 938
AcuI	CTGAAG	2 cut(s)	993, 1022
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	2 cut(s)	213, 963
AfiI	CCNNNNNNNGG	5 cut(s)	925, 926, 1024, 1069, 1080
AflIII	ACRYGT	1 cut(s)	880
AgsI	TTSAA	5 cut(s)	194, 620, 944, 959, 1046
AjnI	CCWGG	3 cut(s)	126, 457, 580
AluBI	AGCT	6 cut(s)	143, 743, 760, 816, 842, 890
AluI	AGCT	6 cut(s)	143, 743, 760, 816, 842, 890
Alw26I	GTCTC	2 cut(s)	27, 355
AlwI	GGATC	3 cut(s)	981, 994, 1035
AoxI	GGCC	4 cut(s)	334, 554, 695, 1071
ApeKI	GCWGC	1 cut(s)	1011
ApoI	RAATTY	2 cut(s)	658, 938
AseI	ATTAAT	1 cut(s)	1058
AspLEI	GCGC	1 cut(s)	924
AspS9I	GGNCC	3 cut(s)	335, 554, 696
AsuHPI	GGTGA	3 cut(s)	190, 420, 727
AxyI	CCTNAGG	1 cut(s)	339
BamHI	GGATCC	1 cut(s)	986
BanI	GGYRCC	1 cut(s)	392
BbsI	GAAGAC	2 cut(s)	23, 72
BbvI	GCAGC	1 cut(s)	998
BccI	CCATC	1 cut(s)	998
BciT130I	CCWGG	3 cut(s)	128, 459, 582
BcoDI	GTCTC	2 cut(s)	27, 355
BfaI	CTAG	1 cut(s)	744
BfmI	CTRYAG	4 cut(s)	233, 441, 477, 538
BfuAI	ACCTGC	1 cut(s)	955
BisI	GCNGC	3 cut(s)	115, 334, 1012
BlsI	GCNGC	3 cut(s)	116, 335, 1013
BmcAI	AGTACT	2 cut(s)	213, 963
Bme1390I	CCNGG	3 cut(s)	128, 459, 582
BmgT120I	GGNCC	3 cut(s)	335, 554, 696
BmiI	GGNNCC	4 cut(s)	132, 394, 555, 988
BmrFI	CCNGG	3 cut(s)	128, 459, 582
BmrI	ACTGGG	1 cut(s)	1058
BmsI	GCATC	2 cut(s)	310, 692
BmuI	ACTGGG	1 cut(s)	1058
BoxI	GACNNNNGTC	1 cut(s)	722
BpiI	GAAGAC	2 cut(s)	23, 72
BpmI	CTGGAG	1 cut(s)	441
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	2 cut(s)	126, 581
BsaWI	WCCGGW	1 cut(s)	983
Bsc4I	CCNNNNNNNGG	5 cut(s)	925, 926, 1024, 1069, 1080
Bse1I	ACTGG	2 cut(s)	563, 1064
Bse21I	CCTNAGG	1 cut(s)	339
BseBI	CCWGG	3 cut(s)	128, 459, 582
BseDI	CCNNGG	2 cut(s)	126, 581
BseGI	GGATG	4 cut(s)	69, 670, 856, 990
BseLI	CCNNNNNNNGG	5 cut(s)	925, 926, 1024, 1069, 1080
BseMII	CTCAG	2 cut(s)	330, 678
BseNI	ACTGG	2 cut(s)	563, 1064
BseRI	GAGGAG	1 cut(s)	869
BseXI	GCAGC	1 cut(s)	998
BsgI	GTGCAG	2 cut(s)	809, 997
Bsh1236I	CGCG	1 cut(s)	922
BshFI	GGCC	4 cut(s)	336, 556, 697, 1073
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	2 cut(s)	111, 984
BslFI	GGGAC	1 cut(s)	900
BslI	CCNNNNNNNGG	5 cut(s)	925, 926, 1024, 1069, 1080
BsmAI	GTCTC	2 cut(s)	27, 355
BsmBI	CGTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	900
BsmI	GAATGC	2 cut(s)	262, 335
BsnI	GGCC	4 cut(s)	336, 556, 697, 1073
Bsp143I	GATC	4 cut(s)	303, 370, 986, 1027
BspACI	CCGC	4 cut(s)	114, 333, 920, 994
BspANI	GGCC	4 cut(s)	336, 556, 697, 1073
BspCNI	CTCAG	2 cut(s)	331, 679
BspFNI	CGCG	1 cut(s)	922
BspLI	GGNNCC	4 cut(s)	132, 394, 555, 988
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	3 cut(s)	981, 994, 1035
BspT107I	GGYRCC	1 cut(s)	392
BsrI	ACTGG	2 cut(s)	563, 1064
BssECI	CCNNGG	2 cut(s)	126, 581
BssMI	GATC	4 cut(s)	303, 370, 986, 1027
BssNI	GRCGYC	1 cut(s)	20
Bst2UI	CCWGG	3 cut(s)	128, 459, 582
Bst4CI	ACNGT	2 cut(s)	577, 724
Bst6I	CTCTTC	2 cut(s)	152, 176
BstACI	GRCGYC	1 cut(s)	20
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	2 cut(s)	339, 687
BstENI	CCTNNNNNAGG	1 cut(s)	1022
BstF5I	GGATG	4 cut(s)	69, 670, 856, 990
BstFNI	CGCG	1 cut(s)	922
BstHHI	GCGC	1 cut(s)	924
BstKTI	GATC	4 cut(s)	306, 373, 989, 1030
BstMAI	GTCTC	2 cut(s)	27, 355
BstMBI	GATC	4 cut(s)	303, 370, 986, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 320
BstNI	CCWGG	3 cut(s)	128, 459, 582
BstNSI	RCATGY	2 cut(s)	367, 884
BstPAI	GACNNNNGTC	1 cut(s)	722
BstSCI	CCNGG	3 cut(s)	126, 457, 580
BstSFI	CTRYAG	4 cut(s)	233, 441, 477, 538
BstUI	CGCG	1 cut(s)	922
BstV1I	GCAGC	1 cut(s)	998
BstV2I	GAAGAC	2 cut(s)	23, 72
BstX2I	RGATCY	1 cut(s)	986
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	986
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	4 cut(s)	336, 556, 697, 1073
BtsCI	GGATG	4 cut(s)	69, 670, 856, 990
BtsI	GCAGTG	2 cut(s)	264, 640
BtsIMutI	CAGTG	4 cut(s)	264, 324, 570, 640
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	924
Cfr13I	GGNCC	3 cut(s)	335, 554, 696
CseI	GACGC	2 cut(s)	110, 280
Csp6I	GTAC	2 cut(s)	212, 962
CviAII	CATG	7 cut(s)	220, 364, 401, 509, 646, 881, 912
CviQI	GTAC	2 cut(s)	212, 962
DdeI	CTNAG	2 cut(s)	339, 687
DpnI	GATC	4 cut(s)	305, 372, 988, 1029
DpnII	GATC	4 cut(s)	303, 370, 986, 1027
Eam1104I	CTCTTC	2 cut(s)	152, 176
EarI	CTCTTC	2 cut(s)	152, 176
Eco32I	GATATC	1 cut(s)	826
Eco57I	CTGAAG	2 cut(s)	993, 1022
Eco81I	CCTNAGG	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	1022
EcoO109I	RGGNCCY	2 cut(s)	554, 696
EcoRII	CCWGG	3 cut(s)	126, 457, 580
EcoRV	GATATC	1 cut(s)	826
Esp3I	CGTCTC	1 cut(s)	27
FaeI	CATG	7 cut(s)	223, 367, 404, 512, 649, 884, 915
FalI	AAGNNNNNCTT	2 cut(s)	90, 122
FaqI	GGGAC	1 cut(s)	900
FatI	CATG	7 cut(s)	219, 363, 400, 508, 645, 880, 911
FauI	CCCGC	1 cut(s)	927
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	3 cut(s)	115, 334, 1012
FokI	GGATG	4 cut(s)	56, 677, 863, 977
Fsp4HI	GCNGC	3 cut(s)	115, 334, 1012
FspBI	CTAG	1 cut(s)	744
GlaI	GCGC	1 cut(s)	923
GluI	GCNGC	3 cut(s)	115, 334, 1012
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	4 cut(s)	336, 556, 697, 1073
HapII	CCGG	2 cut(s)	111, 984
HgaI	GACGC	2 cut(s)	110, 280
HhaI	GCGC	1 cut(s)	924
Hin1I	GRCGYC	1 cut(s)	20
Hin1II	CATG	7 cut(s)	223, 367, 404, 512, 649, 884, 915
Hin6I	GCGC	1 cut(s)	922
HinP1I	GCGC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	1 cut(s)	649
HpaII	CCGG	2 cut(s)	111, 984
HphI	GGTGA	3 cut(s)	190, 420, 727
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	3 cut(s)	27, 370, 688
Hpy188III	TCNNGA	6 cut(s)	85, 134, 409, 494, 653, 833
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	2 cut(s)	158, 274
HpyAV	CCTTC	5 cut(s)	22, 31, 435, 623, 997
HpyCH4III	ACNGT	2 cut(s)	577, 724
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	6 cut(s)	262, 518, 529, 683, 790, 1014
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 320
HpyF3I	CTNAG	2 cut(s)	339, 687
HpySE526I	ACGT	1 cut(s)	20
Hsp92I	GRCGYC	1 cut(s)	20
Hsp92II	CATG	7 cut(s)	223, 367, 404, 512, 649, 884, 915
HspAI	GCGC	1 cut(s)	922
Kzo9I	GATC	4 cut(s)	303, 370, 986, 1027
LmnI	GCTCC	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	998
LweI	GCATC	2 cut(s)	310, 692
MaeI	CTAG	1 cut(s)	744
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	2 cut(s)	715, 1031
MalI	GATC	4 cut(s)	305, 372, 988, 1029
MboI	GATC	4 cut(s)	303, 370, 986, 1027
MflI	RGATCY	1 cut(s)	986
MluCI	AATT	4 cut(s)	658, 728, 807, 938
MseI	TTAA	2 cut(s)	731, 1058
MspA1I	CMGCKG	1 cut(s)	760
MspI	CCGG	2 cut(s)	111, 984
MspR9I	CCNGG	3 cut(s)	128, 459, 582
Mva1269I	GAATGC	2 cut(s)	262, 335
MvaI	CCWGG	3 cut(s)	128, 459, 582
MvnI	CGCG	1 cut(s)	922
MwoI	GCNNNNNNNGC	2 cut(s)	47, 320
NdeII	GATC	4 cut(s)	303, 370, 986, 1027
NlaIII	CATG	7 cut(s)	223, 367, 404, 512, 649, 884, 915
NlaIV	GGNNCC	4 cut(s)	132, 394, 555, 988
NmuCI	GTSAC	1 cut(s)	715
NspI	RCATGY	2 cut(s)	367, 884
PciI	ACATGT	1 cut(s)	880
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	2 cut(s)	262, 335
PfeI	GAWTC	1 cut(s)	649
PkrI	GCNGC	3 cut(s)	116, 335, 1013
PscI	ACATGT	1 cut(s)	880
PshAI	GACNNNNGTC	1 cut(s)	722
PshBI	ATTAAT	1 cut(s)	1058
Psp6I	CCWGG	3 cut(s)	126, 457, 580
PspGI	CCWGG	3 cut(s)	126, 457, 580
PspN4I	GGNNCC	4 cut(s)	132, 394, 555, 988
PspPI	GGNCC	3 cut(s)	335, 554, 696
PsuI	RGATCY	1 cut(s)	986
PvuII	CAGCTG	1 cut(s)	760
RsaI	GTAC	2 cut(s)	213, 963
RsaNI	GTAC	2 cut(s)	212, 962
SalI	GTCGAC	1 cut(s)	155
SaqAI	TTAA	2 cut(s)	731, 1058
SatI	GCNGC	3 cut(s)	115, 334, 1012
Sau3AI	GATC	4 cut(s)	303, 370, 986, 1027
Sau96I	GGNCC	3 cut(s)	335, 554, 696
ScaI	AGTACT	2 cut(s)	213, 963
ScrFI	CCNGG	3 cut(s)	128, 459, 582
SfaNI	GCATC	2 cut(s)	310, 692
SfcI	CTRYAG	4 cut(s)	233, 441, 477, 538
Sse9I	AATT	4 cut(s)	658, 728, 807, 938
SsiI	CCGC	4 cut(s)	114, 333, 920, 994
SspMI	CTAG	1 cut(s)	744
StyD4I	CCNGG	3 cut(s)	126, 457, 580
TaaI	ACNGT	2 cut(s)	577, 724
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	5 cut(s)	84, 156, 269, 726, 877
TasI	AATT	4 cut(s)	658, 728, 807, 938
TatI	WGTACW	2 cut(s)	211, 961
TauI	GCSGC	2 cut(s)	117, 336
TfiI	GAWTC	1 cut(s)	649
Tru1I	TTAA	2 cut(s)	731, 1058
Tru9I	TTAA	2 cut(s)	731, 1058
TscAI	CASTG	4 cut(s)	264, 331, 570, 640
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	1 cut(s)	1011
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	8 cut(s)	153, 434, 498, 537, 612, 642, 662, 912
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	4 cut(s)	264, 331, 570, 640
VspI	ATTAAT	1 cut(s)	1058
XagI	CCTNNNNNAGG	1 cut(s)	1022
XapI	RAATTY	2 cut(s)	658, 938
XceI	RCATGY	2 cut(s)	367, 884
XmiI	GTMKAC	1 cut(s)	156
XspI	CTAG	1 cut(s)	744
ZraI	GACGTC	1 cut(s)	21
ZrmI	AGTACT	2 cut(s)	213, 963

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.