Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0011772

Physical Location & Seq

Genomic Coordinates Forward (+)

7265849 .. 7268248

Gene Structure 2400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026957

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCTACAGAAAAACCCATTTGTAAAAGCAGTGCCTTCTTCAACACTAAAGAAGTGTAAGAAAAAGCGAAAACAGATTGCAAATGCCAATGATGTGACTGAATGCGGCCCTGAGGGTTCTGTCTCAACTTCTGGCATGGCTGACCTATGGGGTGATAAAGGTGGTGACAATCGTGTGGTCAAGAAGATGATGAAGCCTTCACCTATTCCTGCTGTAGAAGTTGAGCCTCCAGGTTGCTCATATAATCCCACAGATGAAAGTCATCAGGAAGCATTGGCTCATGCTGTTGCAGATGAAATGCAGAAAGTCTATAGAAATGAGCTAGGGCCTGAACCAGTGCCTCTAACTGTTCCAGGGGAGACTATTGATGAAGAAGAAATGTATTTTATTGAAGCAGATGAAGGCAGTGATGATGATATGAATCCAGAAAACTTGGATGAGAATGAGCATGGTGCATCTGAGAAAAGGCCCTTTAAAACAAAGAGGGTGACAACAGTCGAATTAAATAAGAGAGCTAGGCGTAAAGAACAGCTGAAAAGGGAAGCAGAAGCGAAGAAGGTGCAGAAGCTTTCCAAAGAAATTGATGGCTTACCAGATATCCTGCAGGAAATAGCTGAAGAGGACGAGGAGAAGCTAAAAAGACATCTTCGACGAGTTGTAGCTAAAAAGGAAAAATCTAAGTCATGCCCCCCGCGCTTGGGGAAGCACAAATTTGAACCTGCCCCAGTTCAAGTCCTTCTGACTGAAGAAAGAACTGGATCCATCCGTAAACTGAAGGGTTGTTGCACCCTTGTCAAGGATCGCTTCAAGAGTCTTGAAAAAAGAGGATTAATCCCAGTAAAGGCCAACAAAAGGAAATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000054 GO:0000055 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0031503 GO:0031974 GO:0031981 GO:0033036 GO:0033750 GO:0034613 GO:0034622 GO:0042254 GO:0042255 GO:0042273 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050657 GO:0050658 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0065003 GO:0070013 GO:0070727 GO:0070925 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071826 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko05168 map05168

Pfam Domains

Protein Families

Nop53

Protein Analysis

288

Amino Acids

32.36

Weight (kDa)

8.92

Isoelectric Point (pI)

58.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nop53	PF07767	59 - 272	3.6e-38	Nop53 (60S ribosomal biogenesis)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011772)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40430 AT2G40430 AT2G40430
fragaria_vesca	FvH4_7g25510 FvH4_7g25510
malus_domestica	MD01G1161500.v1.1 MD07G1229400.v1.1
prunus_persica	Prupe.2G259600_v2.0.a1
pyrus_communis	pycom01g17730 pycom07g20750
rosa_chinensis	RchiOBHm_Chr1g0371491
rosa_laevigata	RLG00000026957
rosa_roxburghii	Rroxscaffold_4G00285640
rosa_rugosa	Rorug01G0364200
rosa_samantha	Rh1AG374600 Rh1BG338000 Rh1CG351300 Rh1DG369000
rosa_wichuraiana	Rw1G032950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	727
AccII	CGCG	1 cut(s)	694
AciI	CCGC	2 cut(s)	105, 692
AclWI	GGATC	3 cut(s)	753, 766, 807
AcsI	RAATTY	1 cut(s)	710
AcuI	CTGAAG	3 cut(s)	636, 765, 794
AfiI	CCNNNNNNNGG	5 cut(s)	697, 698, 796, 841, 852
AgsI	TTSAA	6 cut(s)	42, 392, 716, 731, 808, 818
AjnI	CCWGG	2 cut(s)	229, 352
AluBI	AGCT	7 cut(s)	322, 515, 532, 568, 614, 634, 662
AluI	AGCT	7 cut(s)	322, 515, 532, 568, 614, 634, 662
Alw26I	GTCTC	2 cut(s)	127, 353
AlwI	GGATC	3 cut(s)	753, 766, 807
AoxI	GGCC	4 cut(s)	106, 326, 467, 843
ApoI	RAATTY	1 cut(s)	710
AseI	ATTAAT	1 cut(s)	830
AspLEI	GCGC	1 cut(s)	696
AspS9I	GGNCC	3 cut(s)	107, 326, 468
AsuHPI	GGTGA	4 cut(s)	164, 176, 192, 499
AxyI	CCTNAGG	1 cut(s)	111
BamHI	GGATCC	1 cut(s)	758
BccI	CCATC	2 cut(s)	578, 770
BcgI	CGANNNNNNTGC	2 cut(s)	541, 575
BciT130I	CCWGG	2 cut(s)	231, 354
BcoDI	GTCTC	2 cut(s)	127, 353
BfaI	CTAG	2 cut(s)	323, 516
BfmI	CTRYAG	4 cut(s)	5, 213, 310, 602
BfuAI	ACCTGC	1 cut(s)	727
BisI	GCNGC	1 cut(s)	106
BlsI	GCNGC	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	231, 354
BmgT120I	GGNCC	3 cut(s)	107, 326, 468
BmiI	GGNNCC	1 cut(s)	760
BmrFI	CCNGG	2 cut(s)	231, 354
BmrI	ACTGGG	2 cut(s)	719, 830
BmsI	GCATC	1 cut(s)	464
BmuI	ACTGGG	2 cut(s)	719, 830
BoxI	GACNNNNGTC	1 cut(s)	494
BpmI	CTGGAG	1 cut(s)	213
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	353
Bsc4I	CCNNNNNNNGG	5 cut(s)	697, 698, 796, 841, 852
Bse1I	ACTGG	4 cut(s)	335, 725, 760, 836
Bse21I	CCTNAGG	1 cut(s)	111
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	231, 354
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	2 cut(s)	442, 762
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	5 cut(s)	697, 698, 796, 841, 852
BseMII	CTCAG	2 cut(s)	102, 450
BseNI	ACTGG	4 cut(s)	335, 725, 760, 836
BseRI	GAGGAG	1 cut(s)	641
BsgI	GTGCAG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	4 cut(s)	108, 328, 469, 845
BslI	CCNNNNNNNGG	5 cut(s)	697, 698, 796, 841, 852
BsmAI	GTCTC	2 cut(s)	127, 353
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	4 cut(s)	108, 328, 469, 845
Bsp143I	GATC	2 cut(s)	758, 799
BspACI	CCGC	2 cut(s)	105, 692
BspANI	GGCC	4 cut(s)	108, 328, 469, 845
BspCNI	CTCAG	2 cut(s)	103, 451
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	760
BspMAI	CTGCAG	1 cut(s)	606
BspMI	ACCTGC	1 cut(s)	727
BspPI	GGATC	3 cut(s)	753, 766, 807
BsrI	ACTGG	4 cut(s)	335, 725, 760, 836
BssECI	CCNNGG	1 cut(s)	353
BssMI	GATC	2 cut(s)	758, 799
Bst2UI	CCWGG	2 cut(s)	231, 354
Bst4CI	ACNGT	2 cut(s)	349, 496
Bst6I	CTCTTC	1 cut(s)	612
BstDEI	CTNAG	3 cut(s)	111, 459, 678
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	2 cut(s)	442, 762
BstFNI	CGCG	1 cut(s)	694
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	2 cut(s)	761, 802
BstMAI	GTCTC	2 cut(s)	127, 353
BstMBI	GATC	2 cut(s)	758, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	693
BstNI	CCWGG	2 cut(s)	231, 354
BstPAI	GACNNNNGTC	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	229, 352
BstSFI	CTRYAG	4 cut(s)	5, 213, 310, 602
BstUI	CGCG	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	758
BstYI	RGATCY	1 cut(s)	758
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	4 cut(s)	108, 328, 469, 845
BtsCI	GGATG	2 cut(s)	442, 762
BtsI	GCAGTG	2 cut(s)	36, 412
BtsIMutI	CAGTG	3 cut(s)	36, 342, 412
BveI	ACCTGC	1 cut(s)	727
CfoI	GCGC	1 cut(s)	696
Cfr13I	GGNCC	3 cut(s)	107, 326, 468
CviAII	CATG	4 cut(s)	136, 281, 449, 684
DdeI	CTNAG	3 cut(s)	111, 459, 678
DpnI	GATC	2 cut(s)	760, 801
DpnII	GATC	2 cut(s)	758, 799
DraI	TTTAAA	1 cut(s)	475
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	598
Eco57I	CTGAAG	3 cut(s)	636, 765, 794
Eco81I	CCTNAGG	1 cut(s)	111
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoO109I	RGGNCCY	2 cut(s)	326, 468
EcoRII	CCWGG	2 cut(s)	229, 352
EcoRV	GATATC	1 cut(s)	598
FaeI	CATG	4 cut(s)	139, 284, 452, 687
FaiI	YATR	9 cut(s)	137, 148, 241, 243, 282, 312, 419, 450, 685
FalI	AAGNNNNNCTT	2 cut(s)	788, 820
FatI	CATG	4 cut(s)	135, 280, 448, 683
FauI	CCCGC	1 cut(s)	699
Fnu4HI	GCNGC	1 cut(s)	106
FokI	GGATG	2 cut(s)	449, 749
Fsp4HI	GCNGC	1 cut(s)	106
FspBI	CTAG	2 cut(s)	323, 516
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	213
HaeIII	GGCC	4 cut(s)	108, 328, 469, 845
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	4 cut(s)	139, 284, 452, 687
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	2 cut(s)	421, 811
HphI	GGTGA	4 cut(s)	164, 176, 192, 499
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	2 cut(s)	460, 741
Hpy188III	TCNNGA	5 cut(s)	181, 266, 425, 808, 815
Hpy8I	GTNNAC	1 cut(s)	770
Hpy99I	CGWCG	1 cut(s)	654
HpyAV	CCTTC	6 cut(s)	45, 207, 395, 550, 746, 769
HpyCH4III	ACNGT	2 cut(s)	349, 496
HpyCH4V	TGCA	7 cut(s)	80, 290, 301, 455, 562, 604, 786
HpyF10VI	GCNNNNNNNGC	1 cut(s)	693
HpyF3I	CTNAG	3 cut(s)	111, 459, 678
Hsp92II	CATG	4 cut(s)	139, 284, 452, 687
HspAI	GCGC	1 cut(s)	694
Kzo9I	GATC	2 cut(s)	758, 799
LweI	GCATC	1 cut(s)	464
MaeI	CTAG	2 cut(s)	323, 516
MaeIII	GTNAC	3 cut(s)	94, 164, 487
MalI	GATC	2 cut(s)	760, 801
MboI	GATC	2 cut(s)	758, 799
MboII	GAAGA	8 cut(s)	30, 196, 383, 386, 565, 629, 638, 758
MflI	RGATCY	1 cut(s)	758
MluCI	AATT	3 cut(s)	500, 579, 710
MlyI	GAGTC	1 cut(s)	820
MnlI	CCTC	7 cut(s)	106, 237, 351, 477, 613, 619, 818
MseI	TTAA	4 cut(s)	474, 503, 830, 862
MspA1I	CMGCKG	1 cut(s)	532
MspR9I	CCNGG	2 cut(s)	231, 354
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	2 cut(s)	231, 354
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	1 cut(s)	693
NdeII	GATC	2 cut(s)	758, 799
NlaIII	CATG	4 cut(s)	139, 284, 452, 687
NlaIV	GGNNCC	1 cut(s)	760
NmuCI	GTSAC	3 cut(s)	94, 164, 487
PctI	GAATGC	1 cut(s)	107
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	819
PpsI	GAGTC	1 cut(s)	819
PshAI	GACNNNNGTC	1 cut(s)	494
PshBI	ATTAAT	1 cut(s)	830
Psp6I	CCWGG	2 cut(s)	229, 352
PspGI	CCWGG	2 cut(s)	229, 352
PspN4I	GGNNCC	1 cut(s)	760
PspPI	GGNCC	3 cut(s)	107, 326, 468
PstI	CTGCAG	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	532
SaqAI	TTAA	4 cut(s)	474, 503, 830, 862
SatI	GCNGC	1 cut(s)	106
Sau3AI	GATC	2 cut(s)	758, 799
Sau96I	GGNCC	3 cut(s)	107, 326, 468
SbfI	CCTGCAGG	1 cut(s)	606
SchI	GAGTC	1 cut(s)	820
ScrFI	CCNGG	2 cut(s)	231, 354
SdaI	CCTGCAGG	1 cut(s)	606
SfaNI	GCATC	1 cut(s)	464
SfcI	CTRYAG	4 cut(s)	5, 213, 310, 602
Sse8387I	CCTGCAGG	1 cut(s)	606
Sse9I	AATT	3 cut(s)	500, 579, 710
SsiI	CCGC	2 cut(s)	105, 692
SspI	AATATT	1 cut(s)	860
SspMI	CTAG	2 cut(s)	323, 516
StyD4I	CCNGG	2 cut(s)	229, 352
TaaI	ACNGT	2 cut(s)	349, 496
TaqI	TCGA	2 cut(s)	498, 649
TasI	AATT	3 cut(s)	500, 579, 710
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	4 cut(s)	474, 503, 830, 862
Tru9I	TTAA	4 cut(s)	474, 503, 830, 862
TscAI	CASTG	3 cut(s)	36, 342, 412
TseFI	GTSAC	3 cut(s)	94, 164, 487
Tsp45I	GTSAC	3 cut(s)	94, 164, 487
TspDTI	ATGAA	6 cut(s)	206, 270, 309, 384, 414, 434
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	3 cut(s)	36, 342, 412
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	794
XapI	RAATTY	1 cut(s)	710
XspI	CTAG	2 cut(s)	323, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.