AT2G41480

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0015271
Physical Location & Seq
Reverse (-)
17296894 .. 17298725
1832 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G41480.1

Sequence Viewer

Length: 987 bp
ATGGGAGTGTACTTAGGTAAGTATTGTTATATAATGATAATAATGTTAGTGTTGGTGTTGGGAAAAGAAGTGAGAAGCCAGTTGTTAAAAAATGGTTATTATTCAACTTCATGTCCAAAAGCTGAGTCGATAGTTAGATCCACTGTTGAATCTCACTTTGATTCTGATCCCACAATTTCCCCTGGCTTGCTTAGGCTTCATTTCCATGACTGTTTTGTTCAGGGTTGTGATGGTTCGGTTTTAATCAAAGGGAAATCTGCGGAGCAAGCTGCTCTACCAAATCTTGGTCTAAGAGGTTTAGAAGTGATCGATGATGCTAAAGCCCGGCTTGAGGCGGTGTGTCCAGGAGTTGTGTCATGTGCAGATATACTTGCACTTGCTGCTCGTGACTCTGTTGACTTGAGTGATGGGCCAAGCTGGCGAGTACCAACGGGTCGTAAAGACGGGAGAATCTCGTTGGCAACTGAAGCATCGAATCTACCTTCTCCACTTGACTCTGTTGCTGTTCAAAAGCAAAAGTTTCAAGATAAAGGATTGGATACTCATGATCTAGTTACTCTACTAGGTGCACATACAATTGGACAAACCGACTGTCTCTTCTTCCGTTACCGTTTATACAACTTCACGGTGACCGGAAACTCCGATCCAACCATAAGCCCATCGTTTCTTACACAGCTCAAGACTCTTTGTCCTCCCAATGGAGACGGTTCGAAACGTGTTGCTCTTGACATTGGTAGCCCCTCAAAATTCGATGAAAGTTTCTTCAAGAACTTACGCGACGGAAACGCTATTCTAGAGTCGGACCAACGGCTTTGGTCGGACGCCGAGACAAATGCCGTGGTGAAGAAGTATGCGAGTCGTCTTAGAGGTTTGTTAGGGTTTAGGTTTGATTATGAGTTTGGTAAAGCTATGATTAAGATGAGTTCCATTGATGTAAAGACTGACGTTGATGGCGAGGTTAGGAAAGTTTGTTCCAAGGTGAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

328

Amino Acids

35.89

Weight (kDa)

7.52

Isoelectric Point (pI)

32.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 286 3.2e-86 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AccII CGCG 1 cut(s) 777
AciI CCGC 2 cut(s) 260, 335
AclWI GGATC 3 cut(s) 132, 161, 638
AcsI RAATTY 1 cut(s) 746
AcuI CTGAAG 1 cut(s) 486
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 2 cut(s) 11, 426
AfiI CCNNNNNNNGG 3 cut(s) 284, 331, 698
AflIII ACRYGT 1 cut(s) 715
AgsI TTSAA 5 cut(s) 105, 149, 509, 524, 766
AhdI GACNNNNNGTC 1 cut(s) 687
AjnI CCWGG 2 cut(s) 181, 343
AloI GAACNNNNNNTCC 2 cut(s) 955, 987
AluBI AGCT 5 cut(s) 122, 269, 417, 676, 908
AluI AGCT 5 cut(s) 122, 269, 417, 676, 908
Alw21I GWGCWC 1 cut(s) 571
Alw26I GTCTC 3 cut(s) 599, 696, 821
Alw44I GTGCAC 1 cut(s) 567
AlwI GGATC 3 cut(s) 132, 161, 638
AoxI GGCC 1 cut(s) 410
ApaLI GTGCAC 1 cut(s) 567
ApeKI GCWGC 2 cut(s) 269, 380
ApoI RAATTY 1 cut(s) 746
ArsI GACNNNNNNTTYG 4 cut(s) 110, 142, 577, 609
AspS9I GGNCC 2 cut(s) 410, 802
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 640, 853
AsuII TTCGAA 1 cut(s) 710
AvaII GGWCC 1 cut(s) 802
BaeGI GKGCMC 1 cut(s) 571
BauI CACGAG 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 571
BbvI GCAGC 2 cut(s) 256, 367
BccI CCATC 4 cut(s) 224, 401, 667, 944
BceAI ACGGC 2 cut(s) 821, 824
BcgI CGANNNNNNTGC 2 cut(s) 815, 849
BciT130I CCWGG 2 cut(s) 183, 345
BciVI GTATCC 1 cut(s) 532
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 599, 696, 821
BfaI CTAG 4 cut(s) 551, 563, 794, 985
BfuI GTATCC 1 cut(s) 532
BglI GCCNNNNNGGC 1 cut(s) 418
BisI GCNGC 2 cut(s) 270, 381
BlsI GCNGC 2 cut(s) 271, 382
Bme1390I CCNGG 3 cut(s) 183, 325, 345
Bme18I GGWCC 1 cut(s) 802
BmeRI GACNNNNNGTC 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 410, 802
BmrFI CCNGG 3 cut(s) 183, 325, 345
BmsI GCATC 2 cut(s) 304, 479
Bpu10I CCTNAGC 1 cut(s) 191
Bpu14I TTCGAA 1 cut(s) 710
BpuEI CTTGAG 3 cut(s) 350, 421, 662
BpuMI CCSGG 1 cut(s) 325
Bsa29I ATCGAT 1 cut(s) 309
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 3 cut(s) 181, 837, 975
BsaWI WCCGGW 1 cut(s) 632
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 331, 698
Bse1I ACTGG 1 cut(s) 79
Bse8I GATNNNNATC 1 cut(s) 165
BseBI CCWGG 2 cut(s) 183, 345
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 181, 837, 975
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 3 cut(s) 284, 331, 698
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 79
BseSI GKGCMC 1 cut(s) 571
BseXI GCAGC 2 cut(s) 256, 367
BsgI GTGCAG 1 cut(s) 381
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 571
BsiSI CCGG 2 cut(s) 325, 633
BslI CCNNNNNNNGG 3 cut(s) 284, 331, 698
BsmAI GTCTC 3 cut(s) 599, 696, 821
BsmBI CGTCTC 1 cut(s) 696
BsnI GGCC 1 cut(s) 412
Bsp119I TTCGAA 1 cut(s) 710
Bsp1286I GDGCHC 1 cut(s) 571
Bsp143I GATC 5 cut(s) 137, 166, 306, 547, 643
BspACI CCGC 2 cut(s) 260, 335
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 1 cut(s) 115
BspDI ATCGAT 1 cut(s) 309
BspFNI CGCG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 544
BspPI GGATC 3 cut(s) 132, 161, 638
BspT104I TTCGAA 1 cut(s) 710
BsrI ACTGG 1 cut(s) 79
BssECI CCNNGG 3 cut(s) 181, 837, 975
BssMI GATC 5 cut(s) 137, 166, 306, 547, 643
BssNI GRCGYC 1 cut(s) 822
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 975
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 183, 345
Bst4CI ACNGT 6 cut(s) 145, 212, 593, 611, 628, 707
Bst6I CTCTTC 1 cut(s) 602
BstACI GRCGYC 1 cut(s) 822
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 710
BstC8I GCNNGC 3 cut(s) 188, 267, 419
BstDEI CTNAG 5 cut(s) 13, 123, 191, 290, 863
BstDSI CCRYGG 1 cut(s) 837
BstEII GGTNACC 1 cut(s) 628
BstFNI CGCG 1 cut(s) 777
BstKTI GATC 5 cut(s) 140, 169, 309, 550, 646
BstMAI GTCTC 3 cut(s) 599, 696, 821
BstMBI GATC 5 cut(s) 137, 166, 306, 547, 643
BstMWI GCNNNNNNNGC 4 cut(s) 266, 380, 418, 467
BstNI CCWGG 2 cut(s) 183, 345
BstPI GGTNACC 1 cut(s) 628
BstSCI CCNGG 3 cut(s) 181, 323, 343
BstSLI GKGCMC 1 cut(s) 571
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 2 cut(s) 256, 367
BstX2I RGATCY 1 cut(s) 137
BstYI RGATCY 1 cut(s) 137
Bsu15I ATCGAT 1 cut(s) 309
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 1 cut(s) 412
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 837
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 3 cut(s) 188, 267, 419
CciI TCATGA 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 410, 802
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 830
Csp6I GTAC 2 cut(s) 10, 425
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 4 cut(s) 111, 206, 357, 545
CviQI GTAC 2 cut(s) 10, 425
DdeI CTNAG 5 cut(s) 13, 123, 191, 290, 863
DpnI GATC 5 cut(s) 139, 168, 308, 549, 645
DpnII GATC 5 cut(s) 137, 166, 306, 547, 643
DriI GACNNNNNGTC 1 cut(s) 687
Eam1104I CTCTTC 1 cut(s) 602
Eam1105I GACNNNNNGTC 1 cut(s) 687
EarI CTCTTC 1 cut(s) 602
Eco130I CCWWGG 1 cut(s) 975
Eco47I GGWCC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 486
Eco91I GGTNACC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 628
EcoRII CCWGG 2 cut(s) 181, 343
EcoT14I CCWWGG 1 cut(s) 975
ErhI CCWWGG 1 cut(s) 975
Esp3I CGTCTC 1 cut(s) 696
FaeI CATG 4 cut(s) 114, 209, 360, 548
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 4 cut(s) 110, 205, 356, 544
Fnu4HI GCNGC 2 cut(s) 270, 381
Fsp4HI GCNGC 2 cut(s) 270, 381
FspBI CTAG 4 cut(s) 551, 563, 794, 985
GluI GCNGC 2 cut(s) 270, 381
HaeIII GGCC 1 cut(s) 412
HapII CCGG 2 cut(s) 325, 633
HgaI GACGC 1 cut(s) 830
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 4 cut(s) 114, 209, 360, 548
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HpaII CCGG 2 cut(s) 325, 633
HphI GGTGA 2 cut(s) 640, 853
Hpy166II GTNNAC 4 cut(s) 10, 397, 569, 982
Hpy188I TCNGA 4 cut(s) 166, 643, 802, 820
Hpy188III TCNNGA 7 cut(s) 386, 524, 545, 679, 725, 766, 794
Hpy8I GTNNAC 4 cut(s) 10, 397, 569, 982
Hpy99I CGWCG 1 cut(s) 782
HpyAV CCTTC 1 cut(s) 492
HpyCH4III ACNGT 6 cut(s) 145, 212, 593, 611, 628, 707
HpyCH4IV ACGT 2 cut(s) 715, 945
HpyCH4V TGCA 3 cut(s) 362, 374, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 266, 380, 418, 467
HpyF3I CTNAG 5 cut(s) 13, 123, 191, 290, 863
HpySE526I ACGT 2 cut(s) 715, 945
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 4 cut(s) 114, 209, 360, 548
Kzo9I GATC 5 cut(s) 137, 166, 306, 547, 643
LmnI GCTCC 1 cut(s) 262
LpnPI CCDG 9 cut(s) 92, 168, 195, 206, 330, 338, 357, 403, 646
Lsp1109I GCAGC 2 cut(s) 256, 367
LweI GCATC 2 cut(s) 304, 479
MaeI CTAG 4 cut(s) 551, 563, 794, 985
MaeII ACGT 2 cut(s) 715, 945
MaeIII GTNAC 4 cut(s) 386, 553, 605, 628
MalI GATC 5 cut(s) 139, 168, 308, 549, 645
MboI GATC 5 cut(s) 137, 166, 306, 547, 643
MboII GAAGA 4 cut(s) 589, 592, 754, 856
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 137
MhlI GDGCHC 1 cut(s) 571
MluCI AATT 3 cut(s) 174, 576, 746
MlyI GAGTC 6 cut(s) 134, 383, 488, 676, 806, 865
MmeI TCCRAC 3 cut(s) 671, 780, 798
MnlI CCTC 6 cut(s) 287, 325, 702, 751, 860, 949
MseI TTAA 3 cut(s) 86, 242, 915
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 2 cut(s) 325, 633
MspR9I CCNGG 3 cut(s) 183, 325, 345
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 2 cut(s) 183, 345
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 4 cut(s) 266, 380, 418, 467
NciI CCSGG 1 cut(s) 325
NdeII GATC 5 cut(s) 137, 166, 306, 547, 643
NlaIII CATG 4 cut(s) 114, 209, 360, 548
NmeAIII GCCGAG 1 cut(s) 850
NmuCI GTSAC 2 cut(s) 386, 628
NspV TTCGAA 1 cut(s) 710
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 1 cut(s) 951
PfeI GAWTC 4 cut(s) 149, 161, 450, 475
PflMI CCANNNNNTGG 1 cut(s) 284
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 2 cut(s) 271, 382
PleI GAGTC 6 cut(s) 133, 383, 488, 676, 805, 864
PpsI GAGTC 6 cut(s) 133, 383, 488, 676, 805, 864
Psp6I CCWGG 2 cut(s) 181, 343
PspEI GGTNACC 1 cut(s) 628
PspGI CCWGG 2 cut(s) 181, 343
PspPI GGNCC 2 cut(s) 410, 802
PsuI RGATCY 1 cut(s) 137
RsaI GTAC 2 cut(s) 11, 426
RsaNI GTAC 2 cut(s) 10, 425
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 3 cut(s) 86, 242, 915
SatI GCNGC 2 cut(s) 270, 381
Sau3AI GATC 5 cut(s) 137, 166, 306, 547, 643
Sau96I GGNCC 2 cut(s) 410, 802
SchI GAGTC 6 cut(s) 134, 383, 488, 676, 806, 865
ScrFI CCNGG 3 cut(s) 183, 325, 345
SduI GDGCHC 1 cut(s) 571
SfaNI GCATC 2 cut(s) 304, 479
SfuI TTCGAA 1 cut(s) 710
SinI GGWCC 1 cut(s) 802
SmiMI CAYNNNNRTG 1 cut(s) 204
SmlI CTYRAG 3 cut(s) 329, 400, 677
SmoI CTYRAG 3 cut(s) 329, 400, 677
Sse9I AATT 3 cut(s) 174, 576, 746
SsiI CCGC 2 cut(s) 260, 335
SspMI CTAG 4 cut(s) 551, 563, 794, 985
StyD4I CCNGG 3 cut(s) 181, 323, 343
StyI CCWWGG 1 cut(s) 975
TaaI ACNGT 6 cut(s) 145, 212, 593, 611, 628, 707
TaiI ACGT 2 cut(s) 718, 948
TaqI TCGA 5 cut(s) 128, 309, 473, 710, 750
TasI AATT 3 cut(s) 174, 576, 746
TatI WGTACW 1 cut(s) 9
TfiI GAWTC 4 cut(s) 149, 161, 450, 475
Tru1I TTAA 3 cut(s) 86, 242, 915
Tru9I TTAA 3 cut(s) 86, 242, 915
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 2 cut(s) 386, 628
TseI GCWGC 2 cut(s) 269, 380
Tsp45I GTSAC 2 cut(s) 386, 628
TspDTI ATGAA 3 cut(s) 99, 188, 768
TspGWI ACGGA 2 cut(s) 593, 795
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 284
VneI GTGCAC 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 802
XapI RAATTY 1 cut(s) 746
XbaI TCTAGA 1 cut(s) 793
XspI CTAG 4 cut(s) 551, 563, 794, 985
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.