MD15G1172800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015271
Physical Location & Seq
Forward (+)
13460515 .. 13462105
1591 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1172800.v1.1.491

Sequence Viewer

Length: 966 bp
ATGAAAGCCGTGGTGTCTGTTTTGCTTATCATTCTGGTAATGGTTTTGCCTGCAAAAGGTCAACTGAAAGCTGGATTCTACTCTTCCTCATGTCCAAAAGCAGAGGCCACGGTGAGATCCACAGTTGAATCATACTACAACAAAGATCCCACCATTGCTGCAGGCTTGCTCAGGCTTCACTTCCACGACTGCTTCGTTCAGGGTTGTGACGGTTCGGTTTTGATCAAGGGCGCTTCATCGGAGGGGAATGCCTTGCCGAATCAAGGGTTGAAAGGATTCGAAGTGATTGATGATGCAAAAGCTCAAGTAGAGGCCTTGTGTCCTGGAGTTGTCTCGTGTGCCGATATTCTTGCATTGGCTGCTCGAGATTCTGTTGACTTAAGCGACGGTCCAAGTTGGTCAGTGCCTACCGGAAGAAGGGATGGCAGGGTCTCTTTGTCATCTCAAGCCTCAAACCTACCTTCTCCTCTTGATTCAGTTGCCGTGCAAAGGCAAAAATTTGCTGCTAAAGGCCTCGACGATCATGATCTCGTAACCCTAGTTGGGGGACATACCATTGGCGAAACGCACTGCCAGTTTATCCGATACCGGCTCTACAATTTCACAGCCACAGGCAACTCCGACCCGACCATAAATCAAGCATTCCTAGCACAACTCCAAGCTCTGTGCCCGATGAACGGTGACGGAACGAAGCCGGTGGCATTGGACAGAGGAAGCCAGACCAAGTTTGATGTGAGCTTCTTCAAGAATGTGAAGGATGGAAATGCAGTTTTGGAGTCGGATCAGAGGCTTTGGGGTGATGACGCAACGCGTAAGATAATGCAAAACTATGCTGGCAACATTAGGGGATTGCTAGGGTTTAGATTTGATTTTGAATTCCCAAAAGCTATGATTAAAATGGGTAGCATTGAGGTGAAAATTGGTACACAAGGTGAGATTAGGAAAGTGTGCTCAAAATTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

322

Amino Acids

34.6

Weight (kDa)

8.06

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 38 - 280 9.5e-87 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 811
AclWI GGATC 3 cut(s) 111, 140, 789
AcsI RAATTY 3 cut(s) 497, 875, 956
AdeI CACNNNGTG 1 cut(s) 932
AfaI GTAC 1 cut(s) 925
AfiI CCNNNNNNNGG 7 cut(s) 56, 263, 417, 489, 543, 544, 677
AflII CTTAAG 1 cut(s) 379
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 4 cut(s) 128, 271, 745, 875
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 5 cut(s) 71, 302, 662, 738, 887
AluI AGCT 5 cut(s) 71, 302, 662, 738, 887
Alw21I GWGCWC 1 cut(s) 953
Alw26I GTCTC 2 cut(s) 337, 436
AlwI GGATC 3 cut(s) 111, 140, 789
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 3 cut(s) 105, 312, 511
ApeKI GCWGC 3 cut(s) 158, 359, 503
ApoI RAATTY 3 cut(s) 497, 875, 956
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 389
AsuHPI GGTGA 5 cut(s) 124, 692, 809, 925, 944
AsuII TTCGAA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 389
BaeGI GKGCMC 1 cut(s) 671
BauI CACGAG 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 953
BbvI GCAGC 3 cut(s) 145, 346, 490
BccI CCATC 2 cut(s) 416, 752
BceAI ACGGC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 337, 436
BfaI CTAG 3 cut(s) 539, 647, 854
BfmI CTRYAG 1 cut(s) 159
BfoI RGCGCY 1 cut(s) 234
BfrI CTTAAG 1 cut(s) 379
BisI GCNGC 3 cut(s) 159, 360, 504
BlsI GCNGC 3 cut(s) 160, 361, 505
Bme1390I CCNGG 1 cut(s) 324
Bme18I GGWCC 1 cut(s) 389
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 345
Bpu10I CCTNAGC 1 cut(s) 170
Bpu14I TTCGAA 1 cut(s) 279
BpuEI CTTGAG 2 cut(s) 288, 429
BsaBI GATNNNNATC 1 cut(s) 525
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 9, 108
BsaWI WCCGGW 1 cut(s) 410
Bsc4I CCNNNNNNNGG 7 cut(s) 56, 263, 417, 489, 543, 544, 677
Bse118I RCCGGY 2 cut(s) 588, 694
Bse1I ACTGG 1 cut(s) 574
Bse3DI GCAATG 1 cut(s) 153
Bse8I GATNNNNATC 1 cut(s) 525
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 9, 108
BseGI GGATG 2 cut(s) 427, 763
BseJI GATNNNNATC 1 cut(s) 525
BseLI CCNNNNNNNGG 7 cut(s) 56, 263, 417, 489, 543, 544, 677
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 574
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 671
BseXI GCAGC 3 cut(s) 145, 346, 490
Bsh1236I CGCG 1 cut(s) 811
BshFI GGCC 3 cut(s) 107, 314, 513
BsiHKAI GWGCWC 1 cut(s) 953
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 3 cut(s) 411, 589, 695
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 7 cut(s) 56, 263, 417, 489, 543, 544, 677
BsmAI GTCTC 2 cut(s) 337, 436
BsmFI GGGAC 1 cut(s) 561
BsmI GAATGC 2 cut(s) 253, 641
BsnI GGCC 3 cut(s) 107, 314, 513
Bso31I GGTCTC 1 cut(s) 436
BsoBI CYCGRG 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 671, 953
Bsp143I GATC 6 cut(s) 116, 145, 222, 520, 526, 781
BspANI GGCC 3 cut(s) 107, 314, 513
BspCNI CTCAG 1 cut(s) 183
BspFNI CGCG 1 cut(s) 811
BspHI TCATGA 1 cut(s) 523
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 3 cut(s) 111, 140, 789
BspT104I TTCGAA 1 cut(s) 279
BspTI CTTAAG 1 cut(s) 379
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 2 cut(s) 588, 694
BsrI ACTGG 1 cut(s) 574
BssAI RCCGGY 2 cut(s) 588, 694
BssECI CCNNGG 2 cut(s) 9, 108
BssMI GATC 6 cut(s) 116, 145, 222, 520, 526, 781
BssSI CACGAG 1 cut(s) 334
Bst2BI CACGAG 1 cut(s) 334
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 5 cut(s) 112, 124, 212, 389, 680
Bst6I CTCTTC 1 cut(s) 88
BstAFI CTTAAG 1 cut(s) 379
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 279
BstC8I GCNNGC 4 cut(s) 51, 163, 167, 835
BstDEI CTNAG 1 cut(s) 170
BstDSI CCRYGG 2 cut(s) 9, 108
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 427, 763
BstFNI CGCG 1 cut(s) 811
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 6 cut(s) 119, 148, 225, 523, 529, 784
BstMAI GTCTC 2 cut(s) 337, 436
BstMBI GATC 6 cut(s) 116, 145, 222, 520, 526, 781
BstMWI GCNNNNNNNGC 2 cut(s) 359, 647
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 322
BstSFI CTRYAG 1 cut(s) 159
BstSLI GKGCMC 1 cut(s) 671
BstUI CGCG 1 cut(s) 811
BstV1I GCAGC 3 cut(s) 145, 346, 490
BstX2I RGATCY 2 cut(s) 116, 145
BstYI RGATCY 2 cut(s) 116, 145
BsuRI GGCC 3 cut(s) 107, 314, 513
BtgI CCRYGG 2 cut(s) 9, 108
BtsCI GGATG 2 cut(s) 427, 763
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 408, 568
Cac8I GCNNGC 4 cut(s) 51, 163, 167, 835
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 233
Cfr10I RCCGGY 2 cut(s) 588, 694
Cfr13I GGNCC 1 cut(s) 389
CseI GACGC 1 cut(s) 812
Csp6I GTAC 1 cut(s) 924
CviAII CATG 2 cut(s) 90, 524
CviQI GTAC 1 cut(s) 924
DdeI CTNAG 1 cut(s) 170
DpnI GATC 6 cut(s) 118, 147, 224, 522, 528, 783
DpnII GATC 6 cut(s) 116, 145, 222, 520, 526, 781
DraIII CACNNNGTG 1 cut(s) 932
Eam1104I CTCTTC 1 cut(s) 88
EarI CTCTTC 1 cut(s) 88
Eco147I AGGCCT 2 cut(s) 314, 513
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 389
Eco88I CYCGRG 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoRI GAATTC 1 cut(s) 875
EcoRII CCWGG 1 cut(s) 322
FaeI CATG 2 cut(s) 93, 527
FaiI YATR 7 cut(s) 91, 133, 525, 552, 632, 831, 890
FaqI GGGAC 1 cut(s) 561
FatI CATG 2 cut(s) 89, 523
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 159, 360, 504
FokI GGATG 2 cut(s) 434, 770
Fsp4HI GCNGC 3 cut(s) 159, 360, 504
FspBI CTAG 3 cut(s) 539, 647, 854
GlaI GCGC 1 cut(s) 232
GluI GCNGC 3 cut(s) 159, 360, 504
GsuI CTGGAG 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 3 cut(s) 107, 314, 513
HapII CCGG 3 cut(s) 411, 589, 695
HgaI GACGC 1 cut(s) 812
HhaI GCGC 1 cut(s) 233
Hin1II CATG 2 cut(s) 93, 527
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HincII GTYRAC 2 cut(s) 62, 376
HindII GTYRAC 2 cut(s) 62, 376
HinfI GANTC 7 cut(s) 75, 128, 259, 276, 368, 473, 776
HpaII CCGG 3 cut(s) 411, 589, 695
HphI GGTGA 5 cut(s) 124, 692, 809, 925, 944
Hpy166II GTNNAC 3 cut(s) 62, 376, 926
Hpy188I TCNGA 5 cut(s) 241, 584, 622, 781, 786
Hpy188III TCNNGA 4 cut(s) 365, 470, 524, 745
Hpy8I GTNNAC 3 cut(s) 62, 376, 926
Hpy99I CGWCG 2 cut(s) 389, 521
HpyAV CCTTC 3 cut(s) 411, 471, 748
HpyCH4III ACNGT 5 cut(s) 112, 124, 212, 389, 680
HpyCH4V TGCA 7 cut(s) 53, 161, 296, 353, 487, 767, 823
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 647
HpyF3I CTNAG 1 cut(s) 170
Hsp92II CATG 2 cut(s) 93, 527
HspAI GCGC 1 cut(s) 231
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 6 cut(s) 116, 145, 222, 520, 526, 781
Lsp1109I GCAGC 3 cut(s) 145, 346, 490
LweI GCATC 1 cut(s) 283
MaeI CTAG 3 cut(s) 539, 647, 854
MaeIII GTNAC 3 cut(s) 206, 532, 680
MalI GATC 6 cut(s) 118, 147, 224, 522, 528, 783
MboI GATC 6 cut(s) 116, 145, 222, 520, 526, 781
MboII GAAGA 3 cut(s) 75, 426, 733
MflI RGATCY 2 cut(s) 116, 145
MhlI GDGCHC 2 cut(s) 671, 953
MluCI AATT 6 cut(s) 497, 598, 875, 918, 956, 961
MluI ACGCGT 1 cut(s) 809
MlyI GAGTC 1 cut(s) 785
MmeI TCCRAC 2 cut(s) 645, 759
MroXI GAANNNNTTC 1 cut(s) 275
MseI TTAA 4 cut(s) 380, 894, 960, 964
MslI CAYNNNNRTG 1 cut(s) 911
MspCI CTTAAG 1 cut(s) 379
MspI CCGG 3 cut(s) 411, 589, 695
MspR9I CCNGG 1 cut(s) 324
Mva1269I GAATGC 2 cut(s) 253, 641
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 1 cut(s) 811
MwoI GCNNNNNNNGC 2 cut(s) 359, 647
NdeII GATC 6 cut(s) 116, 145, 222, 520, 526, 781
NlaIII CATG 2 cut(s) 93, 527
NmuCI GTSAC 2 cut(s) 206, 680
NspV TTCGAA 1 cut(s) 279
PacI TTAATTAA 1 cut(s) 964
PaeR7I CTCGAG 1 cut(s) 363
PagI TCATGA 1 cut(s) 523
PceI AGGCCT 2 cut(s) 314, 513
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PctI GAATGC 2 cut(s) 253, 641
PdmI GAANNNNTTC 1 cut(s) 275
PfeI GAWTC 6 cut(s) 75, 128, 259, 276, 368, 473
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 3 cut(s) 160, 361, 505
PleI GAGTC 1 cut(s) 784
PpsI GAGTC 1 cut(s) 784
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspPI GGNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 2 cut(s) 116, 145
RsaI GTAC 1 cut(s) 925
RsaNI GTAC 1 cut(s) 924
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 4 cut(s) 380, 894, 960, 964
SatI GCNGC 3 cut(s) 159, 360, 504
Sau3AI GATC 6 cut(s) 116, 145, 222, 520, 526, 781
Sau96I GGNCC 1 cut(s) 389
SchI GAGTC 1 cut(s) 785
ScrFI CCNGG 1 cut(s) 324
SduI GDGCHC 2 cut(s) 671, 953
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 159
Sfr274I CTCGAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 279
SinI GGWCC 1 cut(s) 389
SlaI CTCGAG 1 cut(s) 363
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 4 cut(s) 303, 363, 379, 444
SmoI CTYRAG 4 cut(s) 303, 363, 379, 444
Sse9I AATT 6 cut(s) 497, 598, 875, 918, 956, 961
SseBI AGGCCT 2 cut(s) 314, 513
SspMI CTAG 3 cut(s) 539, 647, 854
StuI AGGCCT 2 cut(s) 314, 513
StyD4I CCNGG 1 cut(s) 322
TaaI ACNGT 5 cut(s) 112, 124, 212, 389, 680
TaqI TCGA 3 cut(s) 279, 364, 516
TasI AATT 6 cut(s) 497, 598, 875, 918, 956, 961
TfiI GAWTC 6 cut(s) 75, 128, 259, 276, 368, 473
Tru1I TTAA 4 cut(s) 380, 894, 960, 964
Tru9I TTAA 4 cut(s) 380, 894, 960, 964
TscAI CASTG 2 cut(s) 408, 575
TseFI GTSAC 2 cut(s) 206, 680
TseI GCWGC 3 cut(s) 158, 359, 503
Tsp45I GTSAC 2 cut(s) 206, 680
TspDTI ATGAA 3 cut(s) 17, 225, 689
TspGWI ACGGA 1 cut(s) 699
TspRI CASTG 2 cut(s) 408, 575
Vha464I CTTAAG 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 389
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 3 cut(s) 497, 875, 956
XhoI CTCGAG 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 3 cut(s) 539, 647, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.