pycom15g15450

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015271
Physical Location & Seq
Forward (+)
10760172 .. 10761854
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15450.1

Sequence Viewer

Length: 972 bp
ATGAAGGTGGTGTCGGTTTTGCTTATCATTCTGGTAATGGTTTTGCCTGCAAAAGGTCAACTGAAAGCTGGATTCTACTCTTCCTCATGTCCAAAAGCAGAGGCCATGGTGAGATCCACAGTTGAATCATACTACAACAAGGATCCCACCTTTGCTGCAGGCTTGCTCAGACTTCACTTCCACGACTGCTTCGTTGAGGGTTGTGACGGTTCAGTTTTGATCAAGGGCGCTTCATCGGAGAGGAATGCCTTGCCGAATCTAGGGTTGAAAGGATTCGAAGTGATTGATGATGCAAAAGCTCAAGTAGAGGCCTTGTGTCCTGGAGTTGTCTCGTGTGCCGATATTCTTGCATTGGCTGCTCGAGATTCTAGCGACGGTCCAAGTTGGTCAGTGCCTACCGGAAGAAGGGATGGCAGGGTCTCTTTGTCATCTCAAGCCTCAAACCTACCTTCTCCTCTTGATTCAGTTGCCGTGCAAAGGCAAAAATTTGCTGCTAAAGGCCTCGACGATCATGATCTCGTAACCCTAGTTGGGGGACATACCATTGGCGAAACGCACTGCCAGTTCATCCGATACCGGCTCTACAATTTCACAGCCACAGGCAACTCCGACCCGACCATAAACCAAGCATTCCTAGAACAACTCCAAGCTCTGTGCCCGATGAACGGCGATGGAACGAAGCCGGTGGCATTGGACAGAGGAAGCCAGACCAAGTTTGATGTGAGCTTCTTCAAGAATGTGAAGGATGGAAATGCAGTTTTGGAGTCGGATCAAAGGCTTTGGGGTGATGACGCAACGCGTAAGATAATGCAAAACTATGCTGGCAACATTAGGGGATTGCTAGGGTTTAGATTTGACTTTGAATTCCCAAAAGCTATGATTAAAATGGGTAGCATTGAGGTGAAAATTGGTACACAAGTGGTTCAGACTTCAAAGCTGTGCGCTCGTCTCTTTGCACCCGAGTTTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

324

Amino Acids

35.07

Weight (kDa)

6.95

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 37 - 276 1.6e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 799
AclWI GGATC 4 cut(s) 108, 137, 150, 777
AcsI RAATTY 2 cut(s) 485, 863
AfaI GTAC 1 cut(s) 913
AfiI CCNNNNNNNGG 7 cut(s) 53, 260, 405, 477, 531, 532, 665
AflIII ACRYGT 1 cut(s) 797
AgsI TTSAA 6 cut(s) 125, 268, 733, 863, 933, 968
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 6 cut(s) 68, 299, 650, 726, 875, 937
AluI AGCT 6 cut(s) 68, 299, 650, 726, 875, 937
Alw26I GTCTC 3 cut(s) 334, 424, 953
AlwI GGATC 4 cut(s) 108, 137, 150, 777
Ama87I CYCGRG 2 cut(s) 360, 959
AoxI GGCC 3 cut(s) 102, 309, 499
ApeKI GCWGC 3 cut(s) 155, 356, 491
ApoI RAATTY 2 cut(s) 485, 863
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 230, 944
AspS9I GGNCC 1 cut(s) 377
AsuHPI GGTGA 3 cut(s) 121, 797, 913
AsuII TTCGAA 1 cut(s) 276
AvaI CYCGRG 2 cut(s) 360, 959
AvaII GGWCC 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 659
BaeI ACNNNNGTAYC 2 cut(s) 903, 936
BamHI GGATCC 1 cut(s) 142
BauI CACGAG 1 cut(s) 331
BbvI GCAGC 3 cut(s) 142, 343, 478
BccI CCATC 3 cut(s) 404, 665, 740
BceAI ACGGC 2 cut(s) 455, 682
BcgI CGANNNNNNTGC 2 cut(s) 329, 363
BciT130I CCWGG 1 cut(s) 321
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 3 cut(s) 334, 424, 953
BfaI CTAG 5 cut(s) 260, 369, 527, 635, 842
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 231
BisI GCNGC 3 cut(s) 156, 357, 492
BlsI GCNGC 3 cut(s) 157, 358, 493
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 377
BmeT110I CYCGRG 2 cut(s) 360, 959
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 280
BpmI CTGGAG 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 276
BpuEI CTTGAG 2 cut(s) 285, 417
BsaBI GATNNNNATC 1 cut(s) 513
BsaI GGTCTC 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 105
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 7 cut(s) 53, 260, 405, 477, 531, 532, 665
Bse118I RCCGGY 2 cut(s) 576, 682
Bse1I ACTGG 1 cut(s) 562
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 3 cut(s) 415, 567, 751
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 7 cut(s) 53, 260, 405, 477, 531, 532, 665
BseMII CTCAG 1 cut(s) 181
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 3 cut(s) 142, 343, 478
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 3 cut(s) 104, 311, 501
BsiHKCI CYCGRG 2 cut(s) 360, 959
BsiSI CCGG 3 cut(s) 399, 577, 683
BslFI GGGAC 1 cut(s) 549
BslI CCNNNNNNNGG 7 cut(s) 53, 260, 405, 477, 531, 532, 665
BsmAI GTCTC 3 cut(s) 334, 424, 953
BsmBI CGTCTC 1 cut(s) 953
BsmFI GGGAC 1 cut(s) 549
BsmI GAATGC 2 cut(s) 250, 629
BsnI GGCC 3 cut(s) 104, 311, 501
Bso31I GGTCTC 1 cut(s) 424
BsoBI CYCGRG 2 cut(s) 360, 959
Bsp119I TTCGAA 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 659
Bsp143I GATC 6 cut(s) 113, 142, 219, 508, 514, 769
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 3 cut(s) 104, 311, 501
BspCNI CTCAG 1 cut(s) 180
BspFNI CGCG 1 cut(s) 799
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 1 cut(s) 144
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 4 cut(s) 108, 137, 150, 777
BspT104I TTCGAA 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 424
BsrFI RCCGGY 2 cut(s) 576, 682
BsrI ACTGG 1 cut(s) 562
BssAI RCCGGY 2 cut(s) 576, 682
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 6 cut(s) 113, 142, 219, 508, 514, 769
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 121, 209, 377
Bst6I CTCTTC 1 cut(s) 85
BstAPI GCANNNNNTGC 1 cut(s) 356
BstBI TTCGAA 1 cut(s) 276
BstC8I GCNNGC 4 cut(s) 48, 160, 164, 823
BstDEI CTNAG 1 cut(s) 167
BstDSI CCRYGG 1 cut(s) 105
BstENI CCTNNNNNAGG 1 cut(s) 51
BstF5I GGATG 3 cut(s) 415, 567, 751
BstFNI CGCG 1 cut(s) 799
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 230, 944
BstKTI GATC 6 cut(s) 116, 145, 222, 511, 517, 772
BstMAI GTCTC 3 cut(s) 334, 424, 953
BstMBI GATC 6 cut(s) 113, 142, 219, 508, 514, 769
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 659
BstUI CGCG 1 cut(s) 799
BstV1I GCAGC 3 cut(s) 142, 343, 478
BstX2I RGATCY 2 cut(s) 113, 142
BstYI RGATCY 2 cut(s) 113, 142
BsuRI GGCC 3 cut(s) 104, 311, 501
BtgI CCRYGG 1 cut(s) 105
BtgZI GCGATG 1 cut(s) 684
BtsCI GGATG 3 cut(s) 415, 567, 751
BtsI GCAGTG 1 cut(s) 556
BtsIMutI CAGTG 2 cut(s) 396, 556
Cac8I GCNNGC 4 cut(s) 48, 160, 164, 823
CciI TCATGA 1 cut(s) 511
CfoI GCGC 2 cut(s) 230, 944
Cfr10I RCCGGY 2 cut(s) 576, 682
Cfr13I GGNCC 1 cut(s) 377
CseI GACGC 1 cut(s) 800
Csp6I GTAC 1 cut(s) 912
CviAII CATG 3 cut(s) 87, 106, 512
CviQI GTAC 1 cut(s) 912
DdeI CTNAG 1 cut(s) 167
DpnI GATC 6 cut(s) 115, 144, 221, 510, 516, 771
DpnII GATC 6 cut(s) 113, 142, 219, 508, 514, 769
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
Eco130I CCWWGG 1 cut(s) 105
Eco147I AGGCCT 2 cut(s) 311, 501
Eco31I GGTCTC 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 377
Eco88I CYCGRG 2 cut(s) 360, 959
EcoNI CCTNNNNNAGG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 953
FaeI CATG 3 cut(s) 90, 109, 515
FaiI YATR 8 cut(s) 88, 107, 130, 513, 540, 620, 819, 878
FaqI GGGAC 1 cut(s) 549
FatI CATG 3 cut(s) 86, 105, 511
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 156, 357, 492
FokI GGATG 3 cut(s) 422, 554, 758
Fsp4HI GCNGC 3 cut(s) 156, 357, 492
FspBI CTAG 5 cut(s) 260, 369, 527, 635, 842
GlaI GCGC 2 cut(s) 229, 943
GluI GCNGC 3 cut(s) 156, 357, 492
GsuI CTGGAG 1 cut(s) 342
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 3 cut(s) 104, 311, 501
HapII CCGG 3 cut(s) 399, 577, 683
HgaI GACGC 1 cut(s) 800
HhaI GCGC 2 cut(s) 230, 944
Hin1II CATG 3 cut(s) 90, 109, 515
Hin6I GCGC 2 cut(s) 228, 942
HinP1I GCGC 2 cut(s) 228, 942
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HinfI GANTC 7 cut(s) 72, 125, 256, 273, 365, 461, 764
HpaII CCGG 3 cut(s) 399, 577, 683
HphI GGTGA 3 cut(s) 121, 797, 913
Hpy166II GTNNAC 2 cut(s) 59, 914
Hpy188I TCNGA 6 cut(s) 170, 238, 572, 610, 769, 927
Hpy188III TCNNGA 4 cut(s) 362, 458, 512, 733
Hpy8I GTNNAC 2 cut(s) 59, 914
Hpy99I CGWCG 2 cut(s) 377, 509
HpyAV CCTTC 3 cut(s) 399, 459, 736
HpyCH4III ACNGT 3 cut(s) 121, 209, 377
HpyCH4V TGCA 8 cut(s) 50, 158, 293, 350, 475, 755, 811, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 1 cut(s) 167
Hsp92II CATG 3 cut(s) 90, 109, 515
HspAI GCGC 2 cut(s) 228, 942
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 6 cut(s) 113, 142, 219, 508, 514, 769
Lsp1109I GCAGC 3 cut(s) 142, 343, 478
LweI GCATC 1 cut(s) 280
MaeI CTAG 5 cut(s) 260, 369, 527, 635, 842
MaeIII GTNAC 2 cut(s) 203, 520
MalI GATC 6 cut(s) 115, 144, 221, 510, 516, 771
MboI GATC 6 cut(s) 113, 142, 219, 508, 514, 769
MboII GAAGA 3 cut(s) 72, 414, 721
MflI RGATCY 2 cut(s) 113, 142
MhlI GDGCHC 1 cut(s) 659
MluCI AATT 4 cut(s) 485, 586, 863, 906
MluI ACGCGT 1 cut(s) 797
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 2 cut(s) 633, 747
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 1 cut(s) 882
MslI CAYNNNNRTG 1 cut(s) 899
MspI CCGG 3 cut(s) 399, 577, 683
MspR9I CCNGG 1 cut(s) 321
Mva1269I GAATGC 2 cut(s) 250, 629
MvaI CCWGG 1 cut(s) 321
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 1 cut(s) 356
NcoI CCATGG 1 cut(s) 105
NdeII GATC 6 cut(s) 113, 142, 219, 508, 514, 769
NlaIII CATG 3 cut(s) 90, 109, 515
NlaIV GGNNCC 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 203
NspV TTCGAA 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 360
PagI TCATGA 1 cut(s) 511
PceI AGGCCT 2 cut(s) 311, 501
PcsI WCGNNNNNNNCGW 1 cut(s) 189
PctI GAATGC 2 cut(s) 250, 629
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 6 cut(s) 72, 125, 256, 273, 365, 461
PfoI TCCNGGA 1 cut(s) 319
PkrI GCNGC 3 cut(s) 157, 358, 493
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 377
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 2 cut(s) 113, 142
RsaI GTAC 1 cut(s) 913
RsaNI GTAC 1 cut(s) 912
RseI CAYNNNNRTG 1 cut(s) 899
SaqAI TTAA 1 cut(s) 882
SatI GCNGC 3 cut(s) 156, 357, 492
Sau3AI GATC 6 cut(s) 113, 142, 219, 508, 514, 769
Sau96I GGNCC 1 cut(s) 377
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 659
SfaNI GCATC 1 cut(s) 280
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 360
SfuI TTCGAA 1 cut(s) 276
SinI GGWCC 1 cut(s) 377
SlaI CTCGAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 899
SmlI CTYRAG 3 cut(s) 300, 360, 432
SmoI CTYRAG 3 cut(s) 300, 360, 432
Sse9I AATT 4 cut(s) 485, 586, 863, 906
SseBI AGGCCT 2 cut(s) 311, 501
SspMI CTAG 5 cut(s) 260, 369, 527, 635, 842
StuI AGGCCT 2 cut(s) 311, 501
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 3 cut(s) 121, 209, 377
TaqI TCGA 3 cut(s) 276, 361, 504
TasI AATT 4 cut(s) 485, 586, 863, 906
TfiI GAWTC 6 cut(s) 72, 125, 256, 273, 365, 461
Tru1I TTAA 1 cut(s) 882
Tru9I TTAA 1 cut(s) 882
TscAI CASTG 2 cut(s) 396, 563
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 3 cut(s) 155, 356, 491
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 4 cut(s) 17, 222, 556, 677
TspRI CASTG 2 cut(s) 396, 563
VpaK11BI GGWCC 1 cut(s) 377
XagI CCTNNNNNAGG 1 cut(s) 51
XapI RAATTY 2 cut(s) 485, 863
XhoI CTCGAG 1 cut(s) 360
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 5 cut(s) 260, 369, 527, 635, 842
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.