RLG00000015945

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015271
Physical Location & Seq
Forward (+)
2674249 .. 2675683
1435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015945

Sequence Viewer

Length: 1005 bp
ATGGGTAAACTAGCTATAGACACACAACTGGTCTTGGTGTTTTCGTTGTTCATTGTAGATATGACAGAGTCAGTTTTCTTTGTCATTCTGGTGATGATTTTGCCTGTGAAAGGTCAATTGAAAACCGGGTTTTATTCCTCTTCATGTCCGAAAGCCGAGGACATTGTCCGGTCCACGGTTGAGTCATACTACAACAAAGATCCTACTATTGCAGCTGGCTTGCTGAGGCTTCACTTCCATGACTGCTTTGTTCAGGGTTGTGATGCTTCTGTTTTGATAAAGGGCTCCTCCGCGGAGAGGAATGCTGTGCCGAATCAGGGGCTAAGAGGATTTGAAGTTATTGATGATGCAAAGGCACAACTAGAGGCCTTGTGTCCTGGACTTGTTTCATGTGCTGATCTAATTGCATTGGCTGCTCGTGATTCTGTTGATTTGAGTGACGGTCCAAGTTGGAGAGTACCTACCGGAAGAAGAGACGGCAGGATCTCTTCGTCGTCTCAGGCATCGAATTTGCCATCTCCTCTCGATTCCATTGCCGTCCAAAGGCAGAAATTTGCTGCTAAAGGCCTTGGATCACGATCTTGGGCACATACCATTGGCCAAACGGACTGCTTATTTTTCAGGTACCGCCTGTACAACTTCACGGCTACCGGAAATTCTGACCCAACCATAAGCCAAGCATCTCTAGCACAACTCCAAGCTCTCTGCCCCAAAGATGGTGATGGCTCCAAACGTGTGGCGTTAGATAAAGGTAGCCAGACCAAATTTGATGTGAGTTTCTTCAAGAATGTGAGGGATGGTAACGCAGTCCTGGAGTCGGATCAGAGGCTTTTAGGTGATGCCACCACGAGCAACATACTGCAAAACTATGCTGGAAGCATAAGAGGATTGCTAGGGTTTAGATTTGACTTGGAGTTCCCAAAAGCTATGATAAAAACGAGCAATATTGAGGTGAAAACTGGTGCAGAAGGAGAGATTAGAAAAGTGTGCTCCAAGTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

335

Amino Acids

36.26

Weight (kDa)

8.36

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 56 - 292 4.1e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 624
AccB1I GGYRCC 1 cut(s) 624
AccII CGCG 1 cut(s) 293
AciI CCGC 3 cut(s) 291, 293, 628
AclWI GGATC 4 cut(s) 194, 491, 580, 828
AcoI YGGCCR 1 cut(s) 598
AcsI RAATTY 4 cut(s) 508, 551, 655, 764
AfaI GTAC 3 cut(s) 459, 626, 635
AfiI CCNNNNNNNGG 7 cut(s) 110, 175, 297, 317, 543, 716, 817
AflIII ACRYGT 1 cut(s) 733
AgsI TTSAA 3 cut(s) 121, 335, 784
AjnI CCWGG 2 cut(s) 376, 810
AluBI AGCT 4 cut(s) 14, 215, 701, 926
AluI AGCT 4 cut(s) 14, 215, 701, 926
Alw21I GWGCWC 1 cut(s) 992
Alw26I GTCTC 2 cut(s) 468, 501
AlwI GGATC 4 cut(s) 194, 491, 580, 828
AoxI GGCC 3 cut(s) 366, 565, 598
ApeKI GCWGC 3 cut(s) 212, 413, 557
ApoI RAATTY 4 cut(s) 508, 551, 655, 764
Asp718I GGTACC 1 cut(s) 624
AspS9I GGNCC 2 cut(s) 171, 443
AsuC2I CCSGG 1 cut(s) 127
AsuHPI GGTGA 4 cut(s) 103, 731, 848, 964
AvaII GGWCC 2 cut(s) 171, 443
BaeGI GKGCMC 1 cut(s) 589
BalI TGGCCA 1 cut(s) 600
BanI GGYRCC 1 cut(s) 624
BanII GRGCYC 1 cut(s) 287
BauI CACGAG 2 cut(s) 417, 847
Bbv12I GWGCWC 1 cut(s) 992
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 224, 400, 544
BccI CCATC 4 cut(s) 523, 710, 716, 791
BceAI ACGGC 3 cut(s) 493, 521, 660
BcgI CGANNNNNNTGC 2 cut(s) 515, 549
BciT130I CCWGG 2 cut(s) 378, 812
BcnI CCSGG 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 468, 501
BfaI CTAG 4 cut(s) 11, 362, 686, 893
BfmI CTRYAG 1 cut(s) 15
BisI GCNGC 3 cut(s) 213, 414, 558
BlsI GCNGC 3 cut(s) 214, 415, 559
Bme1390I CCNGG 3 cut(s) 127, 378, 812
Bme18I GGWCC 2 cut(s) 171, 443
BmgT120I GGNCC 2 cut(s) 171, 443
BmiI GGNNCC 3 cut(s) 286, 626, 727
BmrFI CCNGG 3 cut(s) 127, 378, 812
BmsI GCATC 5 cut(s) 253, 337, 512, 689, 829
BpmI CTGGAG 1 cut(s) 833
Bpu10I CCTNAGC 1 cut(s) 224
BpuMI CCSGG 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 577
BsaJI CCNNGG 4 cut(s) 156, 174, 291, 568
BsaWI WCCGGW 3 cut(s) 168, 464, 650
Bsc4I CCNNNNNNNGG 7 cut(s) 110, 175, 297, 317, 543, 716, 817
Bse1I ACTGG 2 cut(s) 33, 964
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 577
BseBI CCWGG 2 cut(s) 378, 812
BseDI CCNNGG 4 cut(s) 156, 174, 291, 568
BseGI GGATG 1 cut(s) 802
BseJI GATNNNNATC 1 cut(s) 577
BseLI CCNNNNNNNGG 7 cut(s) 110, 175, 297, 317, 543, 716, 817
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 215, 512
BseNI ACTGG 2 cut(s) 33, 964
BseRI GAGGAG 2 cut(s) 277, 510
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 3 cut(s) 224, 400, 544
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 3 cut(s) 368, 567, 600
BshNI GGYRCC 1 cut(s) 624
BsiHKAI GWGCWC 1 cut(s) 992
BsiSI CCGG 4 cut(s) 126, 169, 465, 651
BslI CCNNNNNNNGG 7 cut(s) 110, 175, 297, 317, 543, 716, 817
BsmAI GTCTC 2 cut(s) 468, 501
BsmBI CGTCTC 2 cut(s) 468, 501
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 3 cut(s) 368, 567, 600
Bsp1286I GDGCHC 3 cut(s) 287, 589, 992
Bsp1407I TGTACA 1 cut(s) 633
Bsp143I GATC 6 cut(s) 199, 397, 483, 572, 578, 820
BspACI CCGC 3 cut(s) 291, 293, 628
BspANI GGCC 3 cut(s) 368, 567, 600
BspCNI CTCAG 2 cut(s) 216, 511
BspFNI CGCG 1 cut(s) 293
BspLI GGNNCC 3 cut(s) 286, 626, 727
BspPI GGATC 4 cut(s) 194, 491, 580, 828
BspT107I GGYRCC 1 cut(s) 624
BsrDI GCAATG 1 cut(s) 531
BsrGI TGTACA 1 cut(s) 633
BsrI ACTGG 2 cut(s) 33, 964
BssECI CCNNGG 4 cut(s) 156, 174, 291, 568
BssMI GATC 6 cut(s) 199, 397, 483, 572, 578, 820
BssSI CACGAG 2 cut(s) 417, 847
BssT1I CCWWGG 1 cut(s) 568
Bst2BI CACGAG 2 cut(s) 417, 847
Bst2UI CCWGG 2 cut(s) 378, 812
Bst4CI ACNGT 2 cut(s) 178, 443
Bst6I CTCTTC 3 cut(s) 145, 466, 493
BstAPI GCANNNNNTGC 1 cut(s) 413
BstAUI TGTACA 1 cut(s) 633
BstC8I GCNNGC 2 cut(s) 217, 221
BstDEI CTNAG 3 cut(s) 224, 323, 498
BstDSI CCRYGG 2 cut(s) 174, 291
BstENI CCTNNNNNAGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 802
BstFNI CGCG 1 cut(s) 293
BstKTI GATC 6 cut(s) 202, 400, 486, 575, 581, 823
BstMAI GTCTC 2 cut(s) 468, 501
BstMBI GATC 6 cut(s) 199, 397, 483, 572, 578, 820
BstMWI GCNNNNNNNGC 2 cut(s) 413, 686
BstNI CCWGG 2 cut(s) 378, 812
BstSCI CCNGG 3 cut(s) 125, 376, 810
BstSFI CTRYAG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 589
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 3 cut(s) 224, 400, 544
BstX2I RGATCY 2 cut(s) 199, 483
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 2 cut(s) 199, 483
BsuRI GGCC 3 cut(s) 368, 567, 600
BtgI CCRYGG 2 cut(s) 174, 291
BtsCI GGATG 1 cut(s) 802
Cac8I GCNNGC 2 cut(s) 217, 221
Cfr13I GGNCC 2 cut(s) 171, 443
Cfr42I CCGCGG 1 cut(s) 294
Csp6I GTAC 3 cut(s) 458, 625, 634
CviAII CATG 3 cut(s) 144, 239, 390
CviQI GTAC 3 cut(s) 458, 625, 634
DdeI CTNAG 3 cut(s) 224, 323, 498
DpnI GATC 6 cut(s) 201, 399, 485, 574, 580, 822
DpnII GATC 6 cut(s) 199, 397, 483, 572, 578, 820
EaeI YGGCCR 1 cut(s) 598
Eam1104I CTCTTC 3 cut(s) 145, 466, 493
EarI CTCTTC 3 cut(s) 145, 466, 493
Eco130I CCWWGG 1 cut(s) 568
Eco147I AGGCCT 2 cut(s) 368, 567
Eco24I GRGCYC 1 cut(s) 287
Eco47I GGWCC 2 cut(s) 171, 443
EcoNI CCTNNNNNAGG 1 cut(s) 108
EcoRII CCWGG 2 cut(s) 376, 810
EcoT14I CCWWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 568
Esp3I CGTCTC 2 cut(s) 468, 501
FaeI CATG 3 cut(s) 147, 242, 393
FatI CATG 3 cut(s) 143, 238, 389
Fnu4HI GCNGC 3 cut(s) 213, 414, 558
FokI GGATG 1 cut(s) 809
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 3 cut(s) 213, 414, 558
FspBI CTAG 4 cut(s) 11, 362, 686, 893
GluI GCNGC 3 cut(s) 213, 414, 558
GsuI CTGGAG 1 cut(s) 833
HaeIII GGCC 3 cut(s) 368, 567, 600
HapII CCGG 4 cut(s) 126, 169, 465, 651
Hin1II CATG 3 cut(s) 147, 242, 393
HinfI GANTC 6 cut(s) 68, 182, 313, 422, 527, 815
HpaII CCGG 4 cut(s) 126, 169, 465, 651
HphI GGTGA 4 cut(s) 103, 731, 848, 964
Hpy166II GTNNAC 2 cut(s) 8, 174
Hpy188I TCNGA 4 cut(s) 150, 661, 820, 825
Hpy188III TCNNGA 4 cut(s) 419, 524, 576, 784
Hpy8I GTNNAC 2 cut(s) 8, 174
Hpy99I CGWCG 1 cut(s) 496
HpyAV CCTTC 1 cut(s) 962
HpyCH4III ACNGT 2 cut(s) 178, 443
HpyCH4IV ACGT 1 cut(s) 733
HpyCH4V TGCA 5 cut(s) 212, 350, 407, 862, 965
HpyF10VI GCNNNNNNNGC 2 cut(s) 413, 686
HpyF3I CTNAG 3 cut(s) 224, 323, 498
HpySE526I ACGT 1 cut(s) 733
Hsp92II CATG 3 cut(s) 147, 242, 393
KpnI GGTACC 1 cut(s) 628
KspI CCGCGG 1 cut(s) 294
Kzo9I GATC 6 cut(s) 199, 397, 483, 572, 578, 820
LmnI GCTCC 3 cut(s) 290, 731, 995
Lsp1109I GCAGC 3 cut(s) 224, 400, 544
LweI GCATC 5 cut(s) 253, 337, 512, 689, 829
MaeI CTAG 4 cut(s) 11, 362, 686, 893
MaeII ACGT 1 cut(s) 733
MaeIII GTNAC 2 cut(s) 437, 800
MalI GATC 6 cut(s) 201, 399, 485, 574, 580, 822
MboI GATC 6 cut(s) 199, 397, 483, 572, 578, 820
MboII GAAGA 5 cut(s) 132, 480, 480, 483, 772
MfeI CAATTG 1 cut(s) 116
MflI RGATCY 2 cut(s) 199, 483
MhlI GDGCHC 3 cut(s) 287, 589, 992
MlsI TGGCCA 1 cut(s) 600
MluCI AATT 6 cut(s) 116, 402, 508, 551, 655, 764
MluNI TGGCCA 1 cut(s) 600
MlyI GAGTC 3 cut(s) 77, 191, 824
MmeI TCCRAC 2 cut(s) 431, 798
Mox20I TGGCCA 1 cut(s) 600
MscI TGGCCA 1 cut(s) 600
MseI TTAA 1 cut(s) 999
MslI CAYNNNNRTG 2 cut(s) 89, 237
Msp20I TGGCCA 1 cut(s) 600
MspA1I CMGCKG 2 cut(s) 215, 293
MspI CCGG 4 cut(s) 126, 169, 465, 651
MspR9I CCNGG 3 cut(s) 127, 378, 812
MunI CAATTG 1 cut(s) 116
Mva1269I GAATGC 1 cut(s) 307
MvaI CCWGG 2 cut(s) 378, 812
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 413, 686
NciI CCSGG 1 cut(s) 127
NdeII GATC 6 cut(s) 199, 397, 483, 572, 578, 820
NlaIII CATG 3 cut(s) 147, 242, 393
NlaIV GGNNCC 3 cut(s) 286, 626, 727
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 437
PceI AGGCCT 2 cut(s) 368, 567
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 3 cut(s) 313, 422, 527
PflFI GACNNNGTC 2 cut(s) 67, 164
PfoI TCCNGGA 2 cut(s) 376, 810
PkrI GCNGC 3 cut(s) 214, 415, 559
PleI GAGTC 3 cut(s) 76, 190, 823
PpsI GAGTC 3 cut(s) 76, 190, 823
Psp6I CCWGG 2 cut(s) 376, 810
PspGI CCWGG 2 cut(s) 376, 810
PspN4I GGNNCC 3 cut(s) 286, 626, 727
PspPI GGNCC 2 cut(s) 171, 443
PsuI RGATCY 2 cut(s) 199, 483
PsyI GACNNNGTC 2 cut(s) 67, 164
PvuII CAGCTG 1 cut(s) 215
RsaI GTAC 3 cut(s) 459, 626, 635
RsaNI GTAC 3 cut(s) 458, 625, 634
RseI CAYNNNNRTG 2 cut(s) 89, 237
SacII CCGCGG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 999
SatI GCNGC 3 cut(s) 213, 414, 558
Sau3AI GATC 6 cut(s) 199, 397, 483, 572, 578, 820
Sau96I GGNCC 2 cut(s) 171, 443
SchI GAGTC 3 cut(s) 77, 191, 824
ScrFI CCNGG 3 cut(s) 127, 378, 812
SduI GDGCHC 3 cut(s) 287, 589, 992
SfaNI GCATC 5 cut(s) 253, 337, 512, 689, 829
SfcI CTRYAG 1 cut(s) 15
Sfr303I CCGCGG 1 cut(s) 294
SgrBI CCGCGG 1 cut(s) 294
SinI GGWCC 2 cut(s) 171, 443
SmiMI CAYNNNNRTG 2 cut(s) 89, 237
Sse9I AATT 6 cut(s) 116, 402, 508, 551, 655, 764
SseBI AGGCCT 2 cut(s) 368, 567
SsiI CCGC 3 cut(s) 291, 293, 628
SspI AATATT 1 cut(s) 946
SspMI CTAG 4 cut(s) 11, 362, 686, 893
StuI AGGCCT 2 cut(s) 368, 567
StyD4I CCNGG 3 cut(s) 125, 376, 810
StyI CCWWGG 1 cut(s) 568
TaaI ACNGT 2 cut(s) 178, 443
TaiI ACGT 1 cut(s) 736
TaqI TCGA 2 cut(s) 506, 525
TasI AATT 6 cut(s) 116, 402, 508, 551, 655, 764
TatI WGTACW 1 cut(s) 633
TfiI GAWTC 3 cut(s) 313, 422, 527
Tru1I TTAA 1 cut(s) 999
Tru9I TTAA 1 cut(s) 999
TseFI GTSAC 1 cut(s) 437
TseI GCWGC 3 cut(s) 212, 413, 557
Tsp45I GTSAC 1 cut(s) 437
TspDTI ATGAA 3 cut(s) 40, 132, 378
TspGWI ACGGA 1 cut(s) 620
Tth111I GACNNNGTC 2 cut(s) 67, 164
VpaK11BI GGWCC 2 cut(s) 171, 443
XagI CCTNNNNNAGG 1 cut(s) 108
XapI RAATTY 4 cut(s) 508, 551, 655, 764
XspI CTAG 4 cut(s) 11, 362, 686, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.