Rh2CG038500

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015271
Physical Location & Seq
Forward (+)
3087567 .. 3088942
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG038500.1

Sequence Viewer

Length: 960 bp
ATGAAAGAGTCAGTTTTCTTTGTCATTCTGGTGATGCTGTTGCCTGTGAAAGGTCAATTGAAAACCGGGTTTTATTCCTCTTCATGTCCGAAAGCCGAGGACATTGTCCGGTCCACGGTTGAGTCATACTACAACAAAGATCCTAGTATTGCAGCTGGCTTGCTTAGGCTTCACTTCCATGACTGCTTTGTTCAGGGTTGTGATGCTTCGGTTTTGATAAAGGGGTCCTCCGCGGAGAGGAATGCTGTGCCGAATCAGGGGCTAAGAGGATTTGAAGTTATTGATGATGCAAAGGCACAACTAGAGGCCTTGTGTCCTGGACTTGTTTCATGTGCTGATATAATTGCATTGGCTGCTCGTGATTCTGTTGATTTGAGTGACGGTCCAAGTTGGAGAGTACCTGCCGGAAGAAGAGACGGCAGGATCTCTTCGTCATCTCAGGCATCGAATTTGCCATCTCCTCTCGATTCCATTGCCGTCCAAAGGCAGAAATTTGCTGCTAAAGGCCTTGACGATCACGATCTTGTAACTCTAGTTGGGGCACATACCATTGGCCAAACGGACTGCTTATTTTTCAGGTACCGCCTGTACAACTTCACAGCTACCGGAAATTCTGACCCAACCATAAGCCAAGCATCTCTAGCACAACTCCAAGCTCTCTGCCCCAAAGATGGTGATGGCTCCAAACGTGTGGCATTAGATAAAGGTAGCCAGACCAAGTTTGATGCGAGTTTCTTCAAGAATGTGAGGGATGGTAACGCAGTCCTGGAGTCGGATCAGAGGCTTTTAGGTGACGCTACGACGCGCAACATACTGCAAAACTATGCTGGAAGCATAAGAGGATTGCTAGGGTTTAGATTTGACTTGGAGTTCCCAAAAGCAATGATAAAAATGAGCAATATTGAGGTGAAAACTGGTGCAGAAGGAGAGATTAGAAAAGTGTGCTCCAAGTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

319

Amino Acids

34.6

Weight (kDa)

8.06

Isoelectric Point (pI)

42.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 36 - 277 2.1e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 409
Acc65I GGTACC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 579
AccII CGCG 2 cut(s) 233, 805
AciI CCGC 3 cut(s) 231, 233, 583
AclWI GGATC 3 cut(s) 134, 431, 783
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 3 cut(s) 448, 491, 610
AfaI GTAC 3 cut(s) 399, 581, 590
AfiI CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 671, 772
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 3 cut(s) 61, 275, 739
AjnI CCWGG 2 cut(s) 316, 765
AluBI AGCT 3 cut(s) 155, 602, 656
AluI AGCT 3 cut(s) 155, 602, 656
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 3 cut(s) 134, 431, 783
AoxI GGCC 3 cut(s) 306, 505, 553
ApeKI GCWGC 3 cut(s) 152, 353, 497
ApoI RAATTY 3 cut(s) 448, 491, 610
Asp718I GGTACC 1 cut(s) 579
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 3 cut(s) 111, 225, 383
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 4 cut(s) 43, 686, 803, 919
AvaII GGWCC 3 cut(s) 111, 225, 383
BaeGI GKGCMC 1 cut(s) 544
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 1 cut(s) 579
BauI CACGAG 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 3 cut(s) 164, 340, 484
BccI CCATC 4 cut(s) 463, 665, 671, 746
BceAI ACGGC 2 cut(s) 433, 461
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 2 cut(s) 318, 767
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 5 cut(s) 144, 302, 533, 641, 848
BfuAI ACCTGC 1 cut(s) 409
BisI GCNGC 3 cut(s) 153, 354, 498
BlsI GCNGC 3 cut(s) 154, 355, 499
Bme1390I CCNGG 3 cut(s) 67, 318, 767
Bme18I GGWCC 3 cut(s) 111, 225, 383
BmgT120I GGNCC 3 cut(s) 111, 225, 383
BmiI GGNNCC 3 cut(s) 226, 581, 682
BmrFI CCNGG 3 cut(s) 67, 318, 767
BmsI GCATC 6 cut(s) 24, 193, 277, 452, 644, 715
BpmI CTGGAG 1 cut(s) 788
Bpu10I CCTNAGC 1 cut(s) 164
BpuMI CCSGG 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 96, 114, 231
BsaWI WCCGGW 2 cut(s) 108, 605
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 671, 772
Bse1I ACTGG 1 cut(s) 919
Bse3DI GCAATG 2 cut(s) 471, 888
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 318, 767
BseDI CCNNGG 3 cut(s) 96, 114, 231
BseGI GGATG 1 cut(s) 757
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 671, 772
BseMI GCAATG 2 cut(s) 471, 888
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 919
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 3 cut(s) 164, 340, 484
BsgI GTGCAG 1 cut(s) 939
Bsh1236I CGCG 2 cut(s) 233, 805
BshFI GGCC 3 cut(s) 308, 507, 555
BshNI GGYRCC 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 947
BsiSI CCGG 4 cut(s) 66, 109, 405, 606
BslI CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 671, 772
BsmAI GTCTC 1 cut(s) 408
BsmBI CGTCTC 1 cut(s) 408
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 3 cut(s) 308, 507, 555
Bsp1286I GDGCHC 2 cut(s) 544, 947
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 5 cut(s) 139, 423, 514, 520, 775
BspACI CCGC 3 cut(s) 231, 233, 583
BspANI GGCC 3 cut(s) 308, 507, 555
BspCNI CTCAG 1 cut(s) 451
BspFNI CGCG 2 cut(s) 233, 805
BspLI GGNNCC 3 cut(s) 226, 581, 682
BspMI ACCTGC 1 cut(s) 409
BspPI GGATC 3 cut(s) 134, 431, 783
BspT107I GGYRCC 1 cut(s) 579
BsrDI GCAATG 2 cut(s) 471, 888
BsrGI TGTACA 1 cut(s) 588
BsrI ACTGG 1 cut(s) 919
BssECI CCNNGG 3 cut(s) 96, 114, 231
BssMI GATC 5 cut(s) 139, 423, 514, 520, 775
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 318, 767
Bst4CI ACNGT 2 cut(s) 118, 383
Bst6I CTCTTC 3 cut(s) 85, 406, 433
BstAPI GCANNNNNTGC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 157, 161
BstDEI CTNAG 3 cut(s) 164, 263, 438
BstDSI CCRYGG 2 cut(s) 114, 231
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 757
BstFNI CGCG 2 cut(s) 233, 805
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 5 cut(s) 142, 426, 517, 523, 778
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 5 cut(s) 139, 423, 514, 520, 775
BstMWI GCNNNNNNNGC 2 cut(s) 353, 641
BstNI CCWGG 2 cut(s) 318, 767
BstSCI CCNGG 3 cut(s) 65, 316, 765
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 2 cut(s) 233, 805
BstV1I GCAGC 3 cut(s) 164, 340, 484
BstX2I RGATCY 2 cut(s) 139, 423
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 139, 423
BsuRI GGCC 3 cut(s) 308, 507, 555
BtgI CCRYGG 2 cut(s) 114, 231
BtsCI GGATG 1 cut(s) 757
BveI ACCTGC 1 cut(s) 409
Cac8I GCNNGC 2 cut(s) 157, 161
CfoI GCGC 1 cut(s) 807
Cfr13I GGNCC 3 cut(s) 111, 225, 383
Cfr42I CCGCGG 1 cut(s) 234
CseI GACGC 2 cut(s) 803, 811
Csp6I GTAC 3 cut(s) 398, 580, 589
CviAII CATG 3 cut(s) 84, 179, 330
CviQI GTAC 3 cut(s) 398, 580, 589
DdeI CTNAG 3 cut(s) 164, 263, 438
DpnI GATC 5 cut(s) 141, 425, 516, 522, 777
DpnII GATC 5 cut(s) 139, 423, 514, 520, 775
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 3 cut(s) 85, 406, 433
EarI CTCTTC 3 cut(s) 85, 406, 433
Eco147I AGGCCT 2 cut(s) 308, 507
Eco47I GGWCC 3 cut(s) 111, 225, 383
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 316, 765
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 3 cut(s) 87, 182, 333
FatI CATG 3 cut(s) 83, 178, 329
Fnu4HI GCNGC 3 cut(s) 153, 354, 498
FokI GGATG 1 cut(s) 764
Fsp4HI GCNGC 3 cut(s) 153, 354, 498
FspBI CTAG 5 cut(s) 144, 302, 533, 641, 848
GlaI GCGC 1 cut(s) 806
GluI GCNGC 3 cut(s) 153, 354, 498
GsuI CTGGAG 1 cut(s) 788
HaeIII GGCC 3 cut(s) 308, 507, 555
HapII CCGG 4 cut(s) 66, 109, 405, 606
HgaI GACGC 2 cut(s) 803, 811
HhaI GCGC 1 cut(s) 807
Hin1II CATG 3 cut(s) 87, 182, 333
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HinfI GANTC 6 cut(s) 8, 122, 253, 362, 467, 770
HpaII CCGG 4 cut(s) 66, 109, 405, 606
HphI GGTGA 4 cut(s) 43, 686, 803, 919
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 4 cut(s) 90, 616, 775, 780
Hpy188III TCNNGA 4 cut(s) 359, 464, 518, 739
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 1 cut(s) 805
HpyAV CCTTC 1 cut(s) 917
HpyCH4III ACNGT 2 cut(s) 118, 383
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 5 cut(s) 152, 290, 347, 817, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 641
HpyF3I CTNAG 3 cut(s) 164, 263, 438
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 3 cut(s) 87, 182, 333
HspAI GCGC 1 cut(s) 805
KpnI GGTACC 1 cut(s) 583
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 5 cut(s) 139, 423, 514, 520, 775
LmnI GCTCC 2 cut(s) 686, 950
Lsp1109I GCAGC 3 cut(s) 164, 340, 484
LweI GCATC 6 cut(s) 24, 193, 277, 452, 644, 715
MaeI CTAG 5 cut(s) 144, 302, 533, 641, 848
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 4 cut(s) 377, 526, 755, 791
MalI GATC 5 cut(s) 141, 425, 516, 522, 777
MboI GATC 5 cut(s) 139, 423, 514, 520, 775
MboII GAAGA 5 cut(s) 72, 420, 420, 423, 727
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 2 cut(s) 139, 423
MhlI GDGCHC 2 cut(s) 544, 947
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 5 cut(s) 56, 342, 448, 491, 610
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 3 cut(s) 17, 131, 779
MmeI TCCRAC 2 cut(s) 371, 753
Mox20I TGGCCA 1 cut(s) 555
MscI TGGCCA 1 cut(s) 555
MseI TTAA 1 cut(s) 954
MslI CAYNNNNRTG 2 cut(s) 29, 177
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 155, 233
MspI CCGG 4 cut(s) 66, 109, 405, 606
MspR9I CCNGG 3 cut(s) 67, 318, 767
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 318, 767
MvnI CGCG 2 cut(s) 233, 805
MwoI GCNNNNNNNGC 2 cut(s) 353, 641
NciI CCSGG 1 cut(s) 67
NdeII GATC 5 cut(s) 139, 423, 514, 520, 775
NlaIII CATG 3 cut(s) 87, 182, 333
NlaIV GGNNCC 3 cut(s) 226, 581, 682
NmeAIII GCCGAG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 377, 791
PceI AGGCCT 2 cut(s) 308, 507
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 253, 362, 467
PflFI GACNNNGTC 1 cut(s) 104
PfoI TCCNGGA 2 cut(s) 316, 765
PkrI GCNGC 3 cut(s) 154, 355, 499
PleI GAGTC 3 cut(s) 16, 130, 778
PpsI GAGTC 3 cut(s) 16, 130, 778
PpuMI RGGWCCY 1 cut(s) 225
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 2 cut(s) 316, 765
PspGI CCWGG 2 cut(s) 316, 765
PspN4I GGNNCC 3 cut(s) 226, 581, 682
PspPI GGNCC 3 cut(s) 111, 225, 383
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 2 cut(s) 139, 423
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 3 cut(s) 399, 581, 590
RsaNI GTAC 3 cut(s) 398, 580, 589
RseI CAYNNNNRTG 2 cut(s) 29, 177
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 954
SatI GCNGC 3 cut(s) 153, 354, 498
Sau3AI GATC 5 cut(s) 139, 423, 514, 520, 775
Sau96I GGNCC 3 cut(s) 111, 225, 383
SchI GAGTC 3 cut(s) 17, 131, 779
ScrFI CCNGG 3 cut(s) 67, 318, 767
SduI GDGCHC 2 cut(s) 544, 947
SfaNI GCATC 6 cut(s) 24, 193, 277, 452, 644, 715
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 3 cut(s) 111, 225, 383
SmiMI CAYNNNNRTG 2 cut(s) 29, 177
Sse9I AATT 5 cut(s) 56, 342, 448, 491, 610
SseBI AGGCCT 2 cut(s) 308, 507
SsiI CCGC 3 cut(s) 231, 233, 583
SspI AATATT 1 cut(s) 901
SspMI CTAG 5 cut(s) 144, 302, 533, 641, 848
StuI AGGCCT 2 cut(s) 308, 507
StyD4I CCNGG 3 cut(s) 65, 316, 765
TaaI ACNGT 2 cut(s) 118, 383
TaiI ACGT 1 cut(s) 691
TaqI TCGA 2 cut(s) 446, 465
TasI AATT 5 cut(s) 56, 342, 448, 491, 610
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 3 cut(s) 253, 362, 467
Tru1I TTAA 1 cut(s) 954
Tru9I TTAA 1 cut(s) 954
TseFI GTSAC 2 cut(s) 377, 791
TseI GCWGC 3 cut(s) 152, 353, 497
Tsp45I GTSAC 2 cut(s) 377, 791
TspDTI ATGAA 3 cut(s) 17, 72, 318
TspGWI ACGGA 1 cut(s) 575
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 3 cut(s) 111, 225, 383
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 3 cut(s) 448, 491, 610
XspI CTAG 5 cut(s) 144, 302, 533, 641, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.