FvH4_1g03202

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0015271
Physical Location & Seq
Forward (+)
1798752 .. 1800487
1736 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g03202.t1

Sequence Viewer

Length: 960 bp
ATGAAAGAGTCAATTTTCTTTGTCATTCTGGTGATGATCTTGCCTGTGAAAGGCCAACTGAAAACCGGGTTTTACTCGTCTTCATGTCCGAAAGTGGAGGACATTGTCCGGTCCACGGTTGAGTCATACTACAACAAAGATCCTACTATTGCAGCTGGCTTGCTTAGGCTTCACTTCCATGACTGCTTTGTGCAGGGTTGTGATGCTTCGATTTTGATTAAGGGCACCTCCGCGGAGAGAAATGCATTGCCGAATCTGGGGTTGAAAGGATTTGAAGTTATTGATGATGCAAAGGCACAACTAGAGGCCTCGTGCCCTGGAATTGTTTCATGTGCTGATATAGTTGCATTGGCTGCTCGTGATTCTGTTGACTTGAGTGACGGTCCAAGCTGGAGAGTACCTACCGGAAGAAGAGACGGCAGGATCTCTTCTTCTTCTCAGGCATCGAATTTGCCATCTCCTCTAGATTCCATTGCCATCCAAAGGCAGAAATTTGCTGCTAAAGGACTTGACGATCACGATCTTGTAACTTTAGTTGGGGCACATACCATTGGCCAAACGGACTGCTTATTTTTCAGGTACCGCCTGTACAACTTCACAGCTACCGGAAATTCTGACCCAACCATTAGCCAAGCATCTCTAGCACAACTCCAAGCTCTCTGCCCCAAAGATGGCGATGGCTCCAAACGTGTGGCATTGGATAAAGGTAGCCAGACCAAGTTTGATGCAAATTTCTTCAAGAATGTGAGGGATGGCAATGCAGTTCTCGAGTCAGATCAGAGGCTCTTGGGTGATGCCACGACGCGCAACATACTGCAAAACTATGCCGGAAGCATAAGGGGATTGCTAGGGTTTAGATTTGACCTTGAGTTCCCAAAAGCCATGATCAAAATGAGCAGCATTGATGTGAAAATTGGTGCTGATGGAGAGATTAGGAAAGTGTGCTCCAAGTTCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

320

Amino Acids

34.64

Weight (kDa)

8.06

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 36 - 277 1.6e-84 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 579
AccB1I GGYRCC 2 cut(s) 224, 579
AccII CGCG 2 cut(s) 233, 805
AciI CCGC 3 cut(s) 231, 233, 583
AclWI GGATC 2 cut(s) 134, 431
AcoI YGGCCR 1 cut(s) 553
AcsI RAATTY 4 cut(s) 448, 491, 610, 730
AfaI GTAC 3 cut(s) 399, 581, 590
AfiI CCNNNNNNNGG 5 cut(s) 50, 115, 257, 483, 671
AflIII ACRYGT 1 cut(s) 688
AgsI TTSAA 4 cut(s) 265, 275, 739, 955
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 4 cut(s) 155, 390, 602, 656
AluI AGCT 4 cut(s) 155, 390, 602, 656
Alw21I GWGCWC 1 cut(s) 947
Alw26I GTCTC 1 cut(s) 408
AlwI GGATC 2 cut(s) 134, 431
Ama87I CYCGRG 1 cut(s) 767
AoxI GGCC 3 cut(s) 52, 306, 553
ApeKI GCWGC 4 cut(s) 152, 353, 497, 897
ApoI RAATTY 4 cut(s) 448, 491, 610, 730
Asp700I GAANNNNTTC 1 cut(s) 325
Asp718I GGTACC 1 cut(s) 579
AspLEI GCGC 1 cut(s) 807
AspS9I GGNCC 2 cut(s) 111, 383
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 43, 803
AvaI CYCGRG 1 cut(s) 767
AvaII GGWCC 2 cut(s) 111, 383
BaeGI GKGCMC 3 cut(s) 227, 317, 544
BalI TGGCCA 1 cut(s) 555
BanI GGYRCC 2 cut(s) 224, 579
BauI CACGAG 2 cut(s) 310, 357
BbsI GAAGAC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 947
BbvI GCAGC 4 cut(s) 164, 340, 484, 909
BccI CCATC 6 cut(s) 463, 485, 665, 671, 746, 917
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 318
BclI TGATCA 1 cut(s) 885
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 408
BfaI CTAG 4 cut(s) 302, 464, 641, 848
BisI GCNGC 4 cut(s) 153, 354, 498, 898
BlsI GCNGC 4 cut(s) 154, 355, 499, 899
Bme1390I CCNGG 2 cut(s) 67, 318
Bme18I GGWCC 2 cut(s) 111, 383
BmeT110I CYCGRG 1 cut(s) 767
BmgT120I GGNCC 2 cut(s) 111, 383
BmiI GGNNCC 3 cut(s) 226, 581, 682
BmrFI CCNGG 2 cut(s) 67, 318
BmsI GCATC 6 cut(s) 193, 277, 452, 644, 715, 784
BpiI GAAGAC 1 cut(s) 72
BpmI CTGGAG 1 cut(s) 412
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 2 cut(s) 394, 887
BpuMI CCSGG 1 cut(s) 67
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 3 cut(s) 114, 231, 316
BsaWI WCCGGW 3 cut(s) 108, 404, 605
Bsc4I CCNNNNNNNGG 5 cut(s) 50, 115, 257, 483, 671
Bse3DI GCAATG 3 cut(s) 245, 471, 763
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 3 cut(s) 114, 231, 316
BseGI GGATG 2 cut(s) 477, 757
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 5 cut(s) 50, 115, 257, 483, 671
BseMI GCAATG 3 cut(s) 245, 471, 763
BseMII CTCAG 1 cut(s) 452
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 3 cut(s) 227, 317, 544
BseXI GCAGC 4 cut(s) 164, 340, 484, 909
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 2 cut(s) 233, 805
BshFI GGCC 3 cut(s) 54, 308, 555
BshNI GGYRCC 2 cut(s) 224, 579
BsiHKAI GWGCWC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 767
BsiSI CCGG 5 cut(s) 66, 109, 405, 606, 828
BslI CCNNNNNNNGG 5 cut(s) 50, 115, 257, 483, 671
BsmAI GTCTC 1 cut(s) 408
BsmBI CGTCTC 1 cut(s) 408
BsnI GGCC 3 cut(s) 54, 308, 555
BsoBI CYCGRG 1 cut(s) 767
Bsp1286I GDGCHC 4 cut(s) 227, 317, 544, 947
Bsp1407I TGTACA 1 cut(s) 588
Bsp143I GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
BspACI CCGC 3 cut(s) 231, 233, 583
BspANI GGCC 3 cut(s) 54, 308, 555
BspCNI CTCAG 1 cut(s) 451
BspFNI CGCG 2 cut(s) 233, 805
BspLI GGNNCC 3 cut(s) 226, 581, 682
BspPI GGATC 2 cut(s) 134, 431
BspT107I GGYRCC 2 cut(s) 224, 579
BsrDI GCAATG 3 cut(s) 245, 471, 763
BsrGI TGTACA 1 cut(s) 588
BssECI CCNNGG 3 cut(s) 114, 231, 316
BssMI GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
BssSI CACGAG 2 cut(s) 310, 357
Bst2BI CACGAG 2 cut(s) 310, 357
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 118, 383
Bst6I CTCTTC 2 cut(s) 406, 433
BstAPI GCANNNNNTGC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 157, 161
BstDEI CTNAG 2 cut(s) 164, 438
BstDSI CCRYGG 2 cut(s) 114, 231
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 477, 757
BstFNI CGCG 2 cut(s) 233, 805
BstHHI GCGC 1 cut(s) 807
BstKTI GATC 7 cut(s) 39, 142, 426, 517, 523, 778, 888
BstMAI GTCTC 1 cut(s) 408
BstMBI GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
BstMWI GCNNNNNNNGC 2 cut(s) 353, 641
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 65, 316
BstSLI GKGCMC 3 cut(s) 227, 317, 544
BstUI CGCG 2 cut(s) 233, 805
BstV1I GCAGC 4 cut(s) 164, 340, 484, 909
BstV2I GAAGAC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 139, 423
BstXI CCANNNNNNTGG 1 cut(s) 691
BstYI RGATCY 2 cut(s) 139, 423
BsuRI GGCC 3 cut(s) 54, 308, 555
BtgI CCRYGG 2 cut(s) 114, 231
BtgZI GCGATG 1 cut(s) 690
BtsCI GGATG 2 cut(s) 477, 757
Cac8I GCNNGC 2 cut(s) 157, 161
CfoI GCGC 1 cut(s) 807
Cfr13I GGNCC 2 cut(s) 111, 383
Cfr42I CCGCGG 1 cut(s) 234
CseI GACGC 1 cut(s) 811
Csp6I GTAC 3 cut(s) 398, 580, 589
CviAII CATG 4 cut(s) 84, 179, 330, 883
CviQI GTAC 3 cut(s) 398, 580, 589
DdeI CTNAG 2 cut(s) 164, 438
DpnI GATC 7 cut(s) 38, 141, 425, 516, 522, 777, 887
DpnII GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
EaeI YGGCCR 1 cut(s) 553
Eam1104I CTCTTC 2 cut(s) 406, 433
EarI CTCTTC 2 cut(s) 406, 433
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 111, 383
Eco88I CYCGRG 1 cut(s) 767
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 316
EcoT22I ATGCAT 1 cut(s) 247
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 4 cut(s) 87, 182, 333, 886
FatI CATG 4 cut(s) 83, 178, 329, 882
FbaI TGATCA 1 cut(s) 885
Fnu4HI GCNGC 4 cut(s) 153, 354, 498, 898
FokI GGATG 2 cut(s) 464, 764
Fsp4HI GCNGC 4 cut(s) 153, 354, 498, 898
FspBI CTAG 4 cut(s) 302, 464, 641, 848
GlaI GCGC 1 cut(s) 806
GluI GCNGC 4 cut(s) 153, 354, 498, 898
GsuI CTGGAG 1 cut(s) 412
HaeIII GGCC 3 cut(s) 54, 308, 555
HapII CCGG 5 cut(s) 66, 109, 405, 606, 828
HgaI GACGC 1 cut(s) 811
HhaI GCGC 1 cut(s) 807
Hin1II CATG 4 cut(s) 87, 182, 333, 886
Hin6I GCGC 1 cut(s) 805
HinP1I GCGC 1 cut(s) 805
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 6 cut(s) 8, 122, 253, 362, 467, 770
HpaII CCGG 5 cut(s) 66, 109, 405, 606, 828
HphI GGTGA 2 cut(s) 43, 803
Hpy166II GTNNAC 2 cut(s) 114, 370
Hpy188I TCNGA 4 cut(s) 90, 616, 775, 780
Hpy188III TCNNGA 5 cut(s) 359, 464, 518, 739, 767
Hpy8I GTNNAC 2 cut(s) 114, 370
Hpy99I CGWCG 1 cut(s) 805
HpyCH4III ACNGT 2 cut(s) 118, 383
HpyCH4IV ACGT 1 cut(s) 688
HpyCH4V TGCA 8 cut(s) 152, 193, 245, 290, 347, 728, 761, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 641
HpyF3I CTNAG 2 cut(s) 164, 438
HpySE526I ACGT 1 cut(s) 688
Hsp92II CATG 4 cut(s) 87, 182, 333, 886
HspAI GCGC 1 cut(s) 805
KpnI GGTACC 1 cut(s) 583
Ksp22I TGATCA 1 cut(s) 885
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
LmnI GCTCC 2 cut(s) 686, 950
Lsp1109I GCAGC 4 cut(s) 164, 340, 484, 909
LweI GCATC 6 cut(s) 193, 277, 452, 644, 715, 784
MaeI CTAG 4 cut(s) 302, 464, 641, 848
MaeII ACGT 1 cut(s) 688
MaeIII GTNAC 2 cut(s) 377, 526
MalI GATC 7 cut(s) 38, 141, 425, 516, 522, 777, 887
MboI GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
MboII GAAGA 7 cut(s) 72, 420, 420, 423, 423, 426, 727
MflI RGATCY 2 cut(s) 139, 423
MhlI GDGCHC 4 cut(s) 227, 317, 544, 947
MlsI TGGCCA 1 cut(s) 555
MluCI AATT 7 cut(s) 12, 321, 448, 491, 610, 730, 912
MluNI TGGCCA 1 cut(s) 555
MlyI GAGTC 3 cut(s) 17, 131, 779
MnlI CCTC 7 cut(s) 91, 238, 298, 319, 471, 741, 774
Mox20I TGGCCA 1 cut(s) 555
Mph1103I ATGCAT 1 cut(s) 247
MroXI GAANNNNTTC 1 cut(s) 325
MscI TGGCCA 1 cut(s) 555
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 3 cut(s) 29, 177, 905
Msp20I TGGCCA 1 cut(s) 555
MspA1I CMGCKG 2 cut(s) 155, 233
MspI CCGG 5 cut(s) 66, 109, 405, 606, 828
MspR9I CCNGG 2 cut(s) 67, 318
MvaI CCWGG 1 cut(s) 318
MvnI CGCG 2 cut(s) 233, 805
MwoI GCNNNNNNNGC 2 cut(s) 353, 641
NciI CCSGG 1 cut(s) 67
NdeII GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
NlaIII CATG 4 cut(s) 87, 182, 333, 886
NlaIV GGNNCC 3 cut(s) 226, 581, 682
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 767
PceI AGGCCT 1 cut(s) 308
PdmI GAANNNNTTC 1 cut(s) 325
PfeI GAWTC 3 cut(s) 253, 362, 467
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 4 cut(s) 154, 355, 499, 899
PleI GAGTC 3 cut(s) 16, 130, 778
PpsI GAGTC 3 cut(s) 16, 130, 778
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 226, 581, 682
PspPI GGNCC 2 cut(s) 111, 383
PsuI RGATCY 2 cut(s) 139, 423
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 3 cut(s) 399, 581, 590
RsaNI GTAC 3 cut(s) 398, 580, 589
RseI CAYNNNNRTG 3 cut(s) 29, 177, 905
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 4 cut(s) 153, 354, 498, 898
Sau3AI GATC 7 cut(s) 36, 139, 423, 514, 520, 775, 885
Sau96I GGNCC 2 cut(s) 111, 383
SchI GAGTC 3 cut(s) 17, 131, 779
ScrFI CCNGG 2 cut(s) 67, 318
SduI GDGCHC 4 cut(s) 227, 317, 544, 947
SfaNI GCATC 6 cut(s) 193, 277, 452, 644, 715, 784
Sfr274I CTCGAG 1 cut(s) 767
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 2 cut(s) 111, 383
SlaI CTCGAG 1 cut(s) 767
SmiMI CAYNNNNRTG 3 cut(s) 29, 177, 905
SmlI CTYRAG 3 cut(s) 373, 767, 866
SmoI CTYRAG 3 cut(s) 373, 767, 866
Sse9I AATT 7 cut(s) 12, 321, 448, 491, 610, 730, 912
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 3 cut(s) 231, 233, 583
SspMI CTAG 4 cut(s) 302, 464, 641, 848
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 65, 316
TaaI ACNGT 2 cut(s) 118, 383
TaiI ACGT 1 cut(s) 691
TaqI TCGA 3 cut(s) 209, 446, 768
TasI AATT 7 cut(s) 12, 321, 448, 491, 610, 730, 912
TatI WGTACW 1 cut(s) 588
TfiI GAWTC 3 cut(s) 253, 362, 467
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 4 cut(s) 152, 353, 497, 897
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 17, 72, 318
TspGWI ACGGA 1 cut(s) 575
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 111, 383
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 4 cut(s) 448, 491, 610, 730
XbaI TCTAGA 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 767
XmnI GAANNNNTTC 1 cut(s) 325
XspI CTAG 4 cut(s) 302, 464, 641, 848
Zsp2I ATGCAT 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.