Rroxscaffold_2G00152730

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0015271
Physical Location & Seq
Reverse (-)
89585471 .. 89587022
1552 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00152730.1

Sequence Viewer

Length: 972 bp
ATGAAAGAGTCAGTTTTCTTCGTCATTCTGGTGATGATTTTGCCTGTGAAAGGTCAATTGAAAACCGAGTTTTATTCCTCTTCATGTCCGAAAGTCGAGGACATTGTCCGGTCCACGGTTGAGTCATACTACAACAAAGATCCTAGTATTGCAGCTGGCTTGCTTAGGCTTCACTTCCATGACTGCTTTGTTCAGGGTTGTGATGCTTCGGTTTTGATAAAGGGTTCCTCCGCGGAGAGGAATGCTGTGCCGAATCAGGGGCTAAGAGGATTTGAAGTTATTGACGATGCAAAGGCACAACTAGAGGCCTTGTGTCCTGGACTTGTTTCATGTGCTGATATAATTGCATTGGCTGCTCGTGATTCTGTTGACTTGAGTGACGGTCCAAGTTGGAGAGTACCTACCGGAAGAAGAGACGGCAGGATCTCTTCGTCGTCTCAGGCATCGAATTTGCCATCTCCTCTCGATTCCATTGCCGTCCAAAGGCAGAAATTTGGTGCTAAAGGTCTTGACGATCACGATCTTGTAACTCTAGTTGGTGAGACTCTTTGGGCACATACCATTGGCCAAACGGACTGCTTATTTTTCAGGTACCGCCTGTACAACTTCACAGCTACCGGAAATTCTGACCCAACCATAAGCCAAGCATCTCTAGCACAACTCCAAGCTCTCTGCCCCAAAGATGGTGATGGCTCCAAACGTGTGGCATTAGATAAAGGTAGCCAGACCAAGTTTGATGCGAGTTTCTTCAAGAATGTGAGGGATGGTAACGCAGTCCTGGAGTCGGATCAGAGGCTTTTAGGTGATGCTACGACGCGCAACATACTGCAAAACTATGCTGGAAGCATAAGAGGATTGCTGGGGTTTAGATTTGACTTGGAGTTCTCAAAAGCTATGATAAAAATGAGCAATATTGAGGTGAAAACTGGTGCAGAAGGAGAGATTAGAAAAGTGTGCTCCAAGTTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005911 GO:0009505 GO:0009506 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

323

Amino Acids

35.23

Weight (kDa)

6.89

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 36 - 281 7.4e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41480
fragaria_vesca FvH4_1g03202
malus_domestica MD15G1172800.v1.1
prunus_persica Prupe.7G243400_v2.0.a1 Prupe.7G243400_v2.0.a1
pyrus_communis pycom15g15450
rosa_chinensis RchiOBHm_Chr2g0088361
rosa_laevigata RLG00000015945
rosa_multiflora Rmu_sc0004235.1_g000026
rosa_roxburghii Rroxscaffold_2G00152730
rosa_rugosa Rorug01G0483100
rosa_samantha Rh2AG038100 Rh2BG037400 Rh2CG038500 Rh2DG038000
rosa_wichuraiana Rw2G003020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 591
AccII CGCG 2 cut(s) 233, 817
AciI CCGC 3 cut(s) 231, 233, 595
AclWI GGATC 3 cut(s) 134, 431, 795
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 3 cut(s) 448, 491, 622
AfaI GTAC 3 cut(s) 399, 593, 602
AfiI CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 683, 784
AflIII ACRYGT 1 cut(s) 700
AgsI TTSAA 3 cut(s) 61, 275, 751
AjnI CCWGG 2 cut(s) 316, 777
AluBI AGCT 4 cut(s) 155, 614, 668, 893
AluI AGCT 4 cut(s) 155, 614, 668, 893
Alw21I GWGCWC 1 cut(s) 959
Alw26I GTCTC 3 cut(s) 408, 441, 536
AlwI GGATC 3 cut(s) 134, 431, 795
AoxI GGCC 2 cut(s) 306, 565
ApeKI GCWGC 2 cut(s) 152, 353
ApoI RAATTY 3 cut(s) 448, 491, 622
Asp718I GGTACC 1 cut(s) 591
AspLEI GCGC 1 cut(s) 819
AspS9I GGNCC 2 cut(s) 111, 383
AsuHPI GGTGA 5 cut(s) 43, 551, 698, 815, 931
AvaII GGWCC 2 cut(s) 111, 383
BaeGI GKGCMC 1 cut(s) 556
BalI TGGCCA 1 cut(s) 567
BanI GGYRCC 1 cut(s) 591
BauI CACGAG 1 cut(s) 357
Bbv12I GWGCWC 1 cut(s) 959
BbvI GCAGC 2 cut(s) 164, 340
BccI CCATC 4 cut(s) 463, 677, 683, 758
BceAI ACGGC 2 cut(s) 433, 461
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 2 cut(s) 318, 779
BcoDI GTCTC 3 cut(s) 408, 441, 536
BfaI CTAG 4 cut(s) 144, 302, 533, 653
BisI GCNGC 2 cut(s) 153, 354
BlsI GCNGC 2 cut(s) 154, 355
Bme1390I CCNGG 2 cut(s) 318, 779
Bme18I GGWCC 2 cut(s) 111, 383
BmgT120I GGNCC 2 cut(s) 111, 383
BmiI GGNNCC 3 cut(s) 226, 593, 694
BmrFI CCNGG 2 cut(s) 318, 779
BmsI GCATC 6 cut(s) 193, 277, 452, 656, 727, 796
BpmI CTGGAG 1 cut(s) 800
Bpu10I CCTNAGC 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 394
BsaBI GATNNNNATC 1 cut(s) 519
BsaJI CCNNGG 2 cut(s) 114, 231
BsaWI WCCGGW 3 cut(s) 108, 404, 617
Bsc4I CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 683, 784
Bse1I ACTGG 1 cut(s) 931
Bse3DI GCAATG 1 cut(s) 471
Bse8I GATNNNNATC 1 cut(s) 519
BseBI CCWGG 2 cut(s) 318, 779
BseDI CCNNGG 2 cut(s) 114, 231
BseGI GGATG 1 cut(s) 769
BseJI GATNNNNATC 1 cut(s) 519
BseLI CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 683, 784
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 931
BseRI GAGGAG 1 cut(s) 450
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 2 cut(s) 164, 340
BseYI CCCAGC 1 cut(s) 859
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 2 cut(s) 233, 817
BshFI GGCC 2 cut(s) 308, 567
BshNI GGYRCC 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 959
BsiSI CCGG 3 cut(s) 109, 405, 618
BslI CCNNNNNNNGG 7 cut(s) 50, 115, 237, 257, 483, 683, 784
BsmAI GTCTC 3 cut(s) 408, 441, 536
BsmBI CGTCTC 2 cut(s) 408, 441
BsmI GAATGC 1 cut(s) 247
BsnI GGCC 2 cut(s) 308, 567
Bsp1286I GDGCHC 2 cut(s) 556, 959
Bsp1407I TGTACA 1 cut(s) 600
Bsp143I GATC 5 cut(s) 139, 423, 514, 520, 787
BspACI CCGC 3 cut(s) 231, 233, 595
BspANI GGCC 2 cut(s) 308, 567
BspCNI CTCAG 1 cut(s) 451
BspFNI CGCG 2 cut(s) 233, 817
BspLI GGNNCC 3 cut(s) 226, 593, 694
BspPI GGATC 3 cut(s) 134, 431, 795
BspT107I GGYRCC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 600
BsrI ACTGG 1 cut(s) 931
BssECI CCNNGG 2 cut(s) 114, 231
BssMI GATC 5 cut(s) 139, 423, 514, 520, 787
BssSI CACGAG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 357
Bst2UI CCWGG 2 cut(s) 318, 779
Bst4CI ACNGT 2 cut(s) 118, 383
Bst6I CTCTTC 3 cut(s) 85, 406, 433
BstAPI GCANNNNNTGC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 600
BstC8I GCNNGC 2 cut(s) 157, 161
BstDEI CTNAG 3 cut(s) 164, 263, 438
BstDSI CCRYGG 2 cut(s) 114, 231
BstENI CCTNNNNNAGG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 2 cut(s) 233, 817
BstHHI GCGC 1 cut(s) 819
BstKTI GATC 5 cut(s) 142, 426, 517, 523, 790
BstMAI GTCTC 3 cut(s) 408, 441, 536
BstMBI GATC 5 cut(s) 139, 423, 514, 520, 787
BstMWI GCNNNNNNNGC 2 cut(s) 353, 653
BstNI CCWGG 2 cut(s) 318, 779
BstSCI CCNGG 2 cut(s) 316, 777
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 2 cut(s) 233, 817
BstV1I GCAGC 2 cut(s) 164, 340
BstX2I RGATCY 2 cut(s) 139, 423
BstXI CCANNNNNNTGG 1 cut(s) 703
BstYI RGATCY 2 cut(s) 139, 423
BsuRI GGCC 2 cut(s) 308, 567
BtgI CCRYGG 2 cut(s) 114, 231
BtsCI GGATG 1 cut(s) 769
Cac8I GCNNGC 2 cut(s) 157, 161
CfoI GCGC 1 cut(s) 819
Cfr13I GGNCC 2 cut(s) 111, 383
Cfr42I CCGCGG 1 cut(s) 234
CseI GACGC 1 cut(s) 823
Csp6I GTAC 3 cut(s) 398, 592, 601
CviAII CATG 3 cut(s) 84, 179, 330
CviQI GTAC 3 cut(s) 398, 592, 601
DdeI CTNAG 3 cut(s) 164, 263, 438
DpnI GATC 5 cut(s) 141, 425, 516, 522, 789
DpnII GATC 5 cut(s) 139, 423, 514, 520, 787
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 3 cut(s) 85, 406, 433
EarI CTCTTC 3 cut(s) 85, 406, 433
Eco147I AGGCCT 1 cut(s) 308
Eco47I GGWCC 2 cut(s) 111, 383
EcoNI CCTNNNNNAGG 1 cut(s) 48
EcoRII CCWGG 2 cut(s) 316, 777
Esp3I CGTCTC 2 cut(s) 408, 441
FaeI CATG 3 cut(s) 87, 182, 333
FatI CATG 3 cut(s) 83, 178, 329
Fnu4HI GCNGC 2 cut(s) 153, 354
FokI GGATG 1 cut(s) 776
Fsp4HI GCNGC 2 cut(s) 153, 354
FspBI CTAG 4 cut(s) 144, 302, 533, 653
GlaI GCGC 1 cut(s) 818
GluI GCNGC 2 cut(s) 153, 354
GsaI CCCAGC 1 cut(s) 863
GsuI CTGGAG 1 cut(s) 800
HaeIII GGCC 2 cut(s) 308, 567
HapII CCGG 3 cut(s) 109, 405, 618
HgaI GACGC 1 cut(s) 823
HhaI GCGC 1 cut(s) 819
Hin1II CATG 3 cut(s) 87, 182, 333
Hin6I GCGC 1 cut(s) 817
HinP1I GCGC 1 cut(s) 817
HincII GTYRAC 1 cut(s) 370
HindII GTYRAC 1 cut(s) 370
HinfI GANTC 7 cut(s) 8, 122, 253, 362, 467, 544, 782
HpaII CCGG 3 cut(s) 109, 405, 618
HphI GGTGA 5 cut(s) 43, 551, 698, 815, 931
Hpy166II GTNNAC 2 cut(s) 114, 370
Hpy188I TCNGA 4 cut(s) 90, 628, 787, 792
Hpy188III TCNNGA 5 cut(s) 359, 464, 509, 518, 751
Hpy8I GTNNAC 2 cut(s) 114, 370
Hpy99I CGWCG 2 cut(s) 436, 817
HpyAV CCTTC 1 cut(s) 929
HpyCH4III ACNGT 2 cut(s) 118, 383
HpyCH4IV ACGT 1 cut(s) 700
HpyCH4V TGCA 5 cut(s) 152, 290, 347, 829, 932
HpyF10VI GCNNNNNNNGC 2 cut(s) 353, 653
HpyF3I CTNAG 3 cut(s) 164, 263, 438
HpySE526I ACGT 1 cut(s) 700
Hsp92II CATG 3 cut(s) 87, 182, 333
HspAI GCGC 1 cut(s) 817
KpnI GGTACC 1 cut(s) 595
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 5 cut(s) 139, 423, 514, 520, 787
LmnI GCTCC 2 cut(s) 698, 962
Lsp1109I GCAGC 2 cut(s) 164, 340
LweI GCATC 6 cut(s) 193, 277, 452, 656, 727, 796
MaeI CTAG 4 cut(s) 144, 302, 533, 653
MaeII ACGT 1 cut(s) 700
MaeIII GTNAC 3 cut(s) 377, 526, 767
MalI GATC 5 cut(s) 141, 425, 516, 522, 789
MboI GATC 5 cut(s) 139, 423, 514, 520, 787
MboII GAAGA 6 cut(s) 10, 72, 420, 420, 423, 739
MfeI CAATTG 1 cut(s) 56
MflI RGATCY 2 cut(s) 139, 423
MhlI GDGCHC 2 cut(s) 556, 959
MlsI TGGCCA 1 cut(s) 567
MluCI AATT 5 cut(s) 56, 342, 448, 491, 622
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 4 cut(s) 17, 131, 538, 791
MmeI TCCRAC 2 cut(s) 371, 765
Mox20I TGGCCA 1 cut(s) 567
MscI TGGCCA 1 cut(s) 567
MseI TTAA 1 cut(s) 966
MslI CAYNNNNRTG 2 cut(s) 29, 177
Msp20I TGGCCA 1 cut(s) 567
MspA1I CMGCKG 2 cut(s) 155, 233
MspI CCGG 3 cut(s) 109, 405, 618
MspR9I CCNGG 2 cut(s) 318, 779
MunI CAATTG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 247
MvaI CCWGG 2 cut(s) 318, 779
MvnI CGCG 2 cut(s) 233, 817
MwoI GCNNNNNNNGC 2 cut(s) 353, 653
NdeII GATC 5 cut(s) 139, 423, 514, 520, 787
NlaIII CATG 3 cut(s) 87, 182, 333
NlaIV GGNNCC 3 cut(s) 226, 593, 694
NmuCI GTSAC 1 cut(s) 377
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 1 cut(s) 247
PfeI GAWTC 3 cut(s) 253, 362, 467
PflFI GACNNNGTC 1 cut(s) 104
PfoI TCCNGGA 2 cut(s) 316, 777
PkrI GCNGC 2 cut(s) 154, 355
PleI GAGTC 4 cut(s) 16, 130, 538, 790
PpsI GAGTC 4 cut(s) 16, 130, 538, 790
Psp6I CCWGG 2 cut(s) 316, 777
PspFI CCCAGC 1 cut(s) 859
PspGI CCWGG 2 cut(s) 316, 777
PspN4I GGNNCC 3 cut(s) 226, 593, 694
PspPI GGNCC 2 cut(s) 111, 383
PsuI RGATCY 2 cut(s) 139, 423
PsyI GACNNNGTC 1 cut(s) 104
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 3 cut(s) 399, 593, 602
RsaNI GTAC 3 cut(s) 398, 592, 601
RseI CAYNNNNRTG 2 cut(s) 29, 177
SacII CCGCGG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 966
SatI GCNGC 2 cut(s) 153, 354
Sau3AI GATC 5 cut(s) 139, 423, 514, 520, 787
Sau96I GGNCC 2 cut(s) 111, 383
SchI GAGTC 4 cut(s) 17, 131, 538, 791
ScrFI CCNGG 2 cut(s) 318, 779
SduI GDGCHC 2 cut(s) 556, 959
SfaNI GCATC 6 cut(s) 193, 277, 452, 656, 727, 796
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 2 cut(s) 111, 383
SmiMI CAYNNNNRTG 2 cut(s) 29, 177
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 5 cut(s) 56, 342, 448, 491, 622
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 3 cut(s) 231, 233, 595
SspI AATATT 1 cut(s) 913
SspMI CTAG 4 cut(s) 144, 302, 533, 653
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 316, 777
TaaI ACNGT 2 cut(s) 118, 383
TaiI ACGT 1 cut(s) 703
TaqI TCGA 3 cut(s) 96, 446, 465
TasI AATT 5 cut(s) 56, 342, 448, 491, 622
TatI WGTACW 1 cut(s) 600
TfiI GAWTC 3 cut(s) 253, 362, 467
Tru1I TTAA 1 cut(s) 966
Tru9I TTAA 1 cut(s) 966
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 152, 353
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 3 cut(s) 17, 72, 318
TspGWI ACGGA 1 cut(s) 587
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 111, 383
XagI CCTNNNNNAGG 1 cut(s) 48
XapI RAATTY 3 cut(s) 448, 491, 622
XspI CTAG 4 cut(s) 144, 302, 533, 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.