AT2G44020
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014188
Physical Location & Seq
Reverse (-)
18217559 .. 18219559
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G44020.1

Sequence Viewer

Length: 1524 bp
ATGAGCTATCTTCTTAGGAGGAACAAGTTCGTAGCTTTACTCAAAAGACAGAGTCTCATCTTTCCGATTACTTCCACTGAAGCTAAAACCCTGATAAACCCAGATCCTAATATCCCTCAATTTCAAAACCCTTGTTCGATTTTCAGGATTGCTCACTATGCAACCCAATCTTCAAAGTTTCCAGAGTACGAGATGCCTACAGTCACATGGGGAGTTATACAAGGGAAGAAAGAGAAGCTCGTGAATCGCGTCAAAATCTGCGACTATCTCAAGGGTTTGGGGATAATCACCGATGAATTGGAGAGTATTGAGCTACCTTCCACCATTGAAGTCATGTGTGAGCGTGTTGAGTTCTTACAGAAGCTAGGGTTAACGATTGACGATATAAATGAGTATCCTTTGATGTTAGGTTGTAGTGTGCGTAAGAATTTGATTCCTGTCTTGGCTTACTTAGAGAAAATTGGAATCTCGAGATCGAAATTAGGAGAATTTGTTAAGAACTATCCTCAGGTTCTACACGCAAGTGTGGTTGTTGAGCTTGCTCCTGTGGTTAAGTTTCTTAGAGGACTCGATGTGGAGAAGCAAGATTTGGGTTATGTATTGATGAAGTATCCTGAGCTGCTAGGGTTTAAGCTTGAAGGCACGATGAGCACATCGGTTGCGTATTTGGTGAGCATTGGTGTGAGTCCTAGGGACATTGGTCCAATGGTAACTCAGTATCCTTATCTTTTGGGAATGAGAGTTGGAACCATGATCAAGCCTTTAGTAGATTATCTAATTTCCATTGGTTTGCCAAAGAAAATTGTGGCTAGGATGCTAGAGAAACGTTCATATATAGTTGGATACAATCTCGAGGAGACTGTTAAACCAAACGTAGATTGCTTGATTAGTTTTGGCGTCAAGAAAGAACTACTACCTTTGCTTATAGCTCAATATCCTCAAATTCTCGGGTTACCAGTGAAAGCCAAGATGTCTACACAACAGTACTTTTTCAGCTTGAAGCTCAAGATTGATCCTGAAGGATTTGCTCGTGTGGTAGAGAAAATGCCACAGATTGTAAGTCTTAAGCAGAATGTGATAATGAAACCCATTGAGTTTCTCTTGGGCAGGGCATTTCAAGTTGAGGACATTGCGAAAATGGTTGTGAGATGTCCTCAGATCCTCTGTTCCCGAGTGGAACTCATGAAGAATAGTTACTACTTTTACAAGACCGAGATGGGGAGACCGATGAAAGAACTCGTGGAGTACCCTGAGTACTTTACTTATAGCTTGGAGTCAAGAATCAAACCGAGGTACCAAAAACTACAGAGCAAAGGAATCAGGAGTTCATTGAACTGGTTCCTCAATTGCAGTGACCAAAGATTCGAGGAACGATTACAAGGTAACTTCATTGATCCAGATACTGAAGGTCCAACGTTTGACATGGGTGGGAAGTTAGAAATGCCTGGTGGCGAGATAGTGACTGATGAGGAAGAAGATGAGAGTGATGATGAAGTTCTCTACAGACGCACTCTTACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

507

Amino Acids

58.07

Weight (kDa)

8.38

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 148 - 456 1.6e-111 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44020
fragaria_vesca FvH4_1g27350 FvH4_1g27350 FvH4_1g27350 FvH4_1g27350
malus_domestica MD07G1031000.v1.1
prunus_persica Prupe.8G049300_v2.0.a1
pyrus_communis pycom07g02260
rosa_chinensis RchiOBHm_Chr3g0488701
rosa_laevigata RLG00000022930
rosa_multiflora Rmu_sc0001208.1_g000078
rosa_samantha Rh3AG289100 Rh3BG325900 Rh3CG323400 Rh3DG321900
rosa_wichuraiana Rw0G013690 Rw3G025590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1293
AccB1I GGYRCC 1 cut(s) 1293
AccI GTMKAC 1 cut(s) 974
AccII CGCG 1 cut(s) 249
AclI AACGTT 2 cut(s) 826, 1415
AclWI GGATC 4 cut(s) 98, 1007, 1153, 1388
AcsI RAATTY 3 cut(s) 427, 488, 942
AcuI CTGAAG 3 cut(s) 99, 1038, 1425
AcyI GRCGYC 1 cut(s) 897
AfaI GTAC 5 cut(s) 188, 986, 1247, 1256, 1295
AfiI CCNNNNNNNGG 1 cut(s) 1218
AflII CTTAAG 1 cut(s) 1064
AgsI TTSAA 7 cut(s) 125, 174, 329, 638, 1000, 1118, 1333
AjnI CCWGG 1 cut(s) 1444
AjuI GAANNNNNNNTTGG 2 cut(s) 572, 604
AleI CACNNNNGTG 1 cut(s) 522
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 3 cut(s) 59, 851, 1216
AlwI GGATC 4 cut(s) 98, 1007, 1153, 1388
AlwNI CAGNNNCTG 1 cut(s) 1403
Ama87I CYCGRG 4 cut(s) 469, 851, 947, 1170
ApeKI GCWGC 1 cut(s) 619
ApoI RAATTY 3 cut(s) 427, 488, 942
ArsI GACNNNNNNTTYG 2 cut(s) 1346, 1378
Asp700I GAANNNNTTC 2 cut(s) 26, 1337
Asp718I GGTACC 1 cut(s) 1293
AspA2I CCTAGG 1 cut(s) 689
AspS9I GGNCC 2 cut(s) 701, 1409
AsuHPI GGTGA 2 cut(s) 280, 682
AvaI CYCGRG 4 cut(s) 469, 851, 947, 1170
AvaII GGWCC 2 cut(s) 701, 1409
AvrII CCTAGG 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 507
BaeI ACNNNNGTAYC 2 cut(s) 1277, 1310
BanI GGYRCC 1 cut(s) 1293
BarI GAAGNNNNNNTAC 2 cut(s) 1178, 1210
BauI CACGAG 3 cut(s) 239, 1029, 1238
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 606
BccI CCATC 1 cut(s) 1210
BciT130I CCWGG 1 cut(s) 1446
BciVI GTATCC 4 cut(s) 405, 621, 729, 836
BclI TGATCA 1 cut(s) 753
BcoDI GTCTC 3 cut(s) 59, 851, 1216
BfaI CTAG 5 cut(s) 365, 623, 690, 810, 818
BfmI CTRYAG 3 cut(s) 198, 1304, 1501
BfrI CTTAAG 1 cut(s) 1064
BfuI GTATCC 4 cut(s) 405, 621, 729, 836
BisI GCNGC 1 cut(s) 620
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 1 cut(s) 621
BmcAI AGTACT 2 cut(s) 986, 1256
Bme1390I CCNGG 1 cut(s) 1446
Bme18I GGWCC 2 cut(s) 701, 1409
BmeT110I CYCGRG 4 cut(s) 469, 851, 947, 1170
BmgT120I GGNCC 2 cut(s) 701, 1409
BmiI GGNNCC 3 cut(s) 748, 1295, 1340
BmrFI CCNGG 1 cut(s) 1446
BmsI GCATC 2 cut(s) 183, 804
BoxI GACNNNNGTC 1 cut(s) 699
BplI GAGNNNNNCTC 4 cut(s) 1138, 1170, 1164, 1196
Bpu10I CCTNAGC 1 cut(s) 615
BpuEI CTTGAG 2 cut(s) 254, 989
BsaHI GRCGYC 1 cut(s) 897
BsaI GGTCTC 1 cut(s) 1216
BsaJI CCNNGG 2 cut(s) 689, 1289
BsaXI ACNNNNNCTCC 2 cut(s) 477, 507
Bsc4I CCNNNNNNNGG 1 cut(s) 1218
Bse1I ACTGG 2 cut(s) 956, 1340
Bse21I CCTNAGG 1 cut(s) 507
Bse3DI GCAATG 1 cut(s) 1128
BseBI CCWGG 1 cut(s) 1446
BseDI CCNNGG 2 cut(s) 689, 1289
BseGI GGATG 1 cut(s) 819
BseLI CCNNNNNNNGG 1 cut(s) 1218
BseMI GCAATG 1 cut(s) 1128
BseMII CTCAG 5 cut(s) 521, 606, 728, 1169, 1242
BseNI ACTGG 2 cut(s) 956, 1340
BseRI GAGGAG 1 cut(s) 869
BseXI GCAGC 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 1293
BsiHKAI GWGCWC 1 cut(s) 653
BsiHKCI CYCGRG 4 cut(s) 469, 851, 947, 1170
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 1218
BsmAI GTCTC 3 cut(s) 59, 851, 1216
BsmFI GGGAC 1 cut(s) 707
Bso31I GGTCTC 1 cut(s) 1216
BsoBI CYCGRG 4 cut(s) 469, 851, 947, 1170
Bsp1286I GDGCHC 1 cut(s) 653
Bsp143I GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
BspCNI CTCAG 5 cut(s) 520, 607, 727, 1168, 1243
BspFNI CGCG 1 cut(s) 249
BspHI TCATGA 1 cut(s) 1182
BspLI GGNNCC 3 cut(s) 748, 1295, 1340
BspPI GGATC 4 cut(s) 98, 1007, 1153, 1388
BspT107I GGYRCC 1 cut(s) 1293
BspTI CTTAAG 1 cut(s) 1064
BspTNI GGTCTC 1 cut(s) 1216
BsrDI GCAATG 1 cut(s) 1128
BsrI ACTGG 2 cut(s) 956, 1340
BssECI CCNNGG 2 cut(s) 689, 1289
BssMI GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
BssNI GRCGYC 1 cut(s) 897
BssSI CACGAG 3 cut(s) 239, 1029, 1238
BssT1I CCWWGG 1 cut(s) 689
Bst2BI CACGAG 3 cut(s) 239, 1029, 1238
Bst2UI CCWGG 1 cut(s) 1446
Bst4CI ACNGT 3 cut(s) 202, 862, 984
BstACI GRCGYC 1 cut(s) 897
BstAFI CTTAAG 1 cut(s) 1064
BstC8I GCNNGC 1 cut(s) 540
BstDEI CTNAG 8 cut(s) 14, 451, 507, 560, 615, 714, 1155, 1251
BstEII GGTNACC 1 cut(s) 951
BstF5I GGATG 1 cut(s) 819
BstFNI CGCG 1 cut(s) 249
BstKTI GATC 6 cut(s) 106, 476, 756, 1015, 1161, 1396
BstMAI GTCTC 3 cut(s) 59, 851, 1216
BstMBI GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
BstMWI GCNNNNNNNGC 2 cut(s) 158, 648
BstNI CCWGG 1 cut(s) 1446
BstPAI GACNNNNGTC 1 cut(s) 699
BstPI GGTNACC 1 cut(s) 951
BstSCI CCNGG 1 cut(s) 1444
BstSFI CTRYAG 3 cut(s) 198, 1304, 1501
BstUI CGCG 1 cut(s) 249
BstV1I GCAGC 1 cut(s) 606
BstX2I RGATCY 2 cut(s) 103, 1158
BstYI RGATCY 2 cut(s) 103, 1158
Bsu36I CCTNAGG 1 cut(s) 507
BsuI GTATCC 4 cut(s) 405, 621, 729, 836
BtsCI GGATG 1 cut(s) 819
BtsI GCAGTG 1 cut(s) 1357
BtsIMutI CAGTG 3 cut(s) 75, 963, 1357
Cac8I GCNNGC 1 cut(s) 540
CaiI CAGNNNCTG 1 cut(s) 1403
CciI TCATGA 1 cut(s) 1182
Cfr13I GGNCC 2 cut(s) 701, 1409
CseI GACGC 3 cut(s) 238, 886, 1515
Csp6I GTAC 5 cut(s) 187, 985, 1246, 1255, 1294
CviAII CATG 5 cut(s) 207, 334, 751, 1183, 1423
CviQI GTAC 5 cut(s) 187, 985, 1246, 1255, 1294
DdeI CTNAG 8 cut(s) 14, 451, 507, 560, 615, 714, 1155, 1251
DpnI GATC 6 cut(s) 105, 475, 755, 1014, 1160, 1395
DpnII GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
Eco130I CCWWGG 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 1216
Eco47I GGWCC 2 cut(s) 701, 1409
Eco57I CTGAAG 3 cut(s) 99, 1038, 1425
Eco81I CCTNAGG 1 cut(s) 507
Eco88I CYCGRG 4 cut(s) 469, 851, 947, 1170
Eco91I GGTNACC 1 cut(s) 951
EcoO65I GGTNACC 1 cut(s) 951
EcoRII CCWGG 1 cut(s) 1444
EcoT14I CCWWGG 1 cut(s) 689
ErhI CCWWGG 1 cut(s) 689
FaeI CATG 5 cut(s) 210, 337, 754, 1186, 1426
FaqI GGGAC 1 cut(s) 707
FatI CATG 5 cut(s) 206, 333, 750, 1182, 1422
FbaI TGATCA 1 cut(s) 753
FblI GTMKAC 1 cut(s) 974
Fnu4HI GCNGC 1 cut(s) 620
FokI GGATG 1 cut(s) 826
Fsp4HI GCNGC 1 cut(s) 620
FspBI CTAG 5 cut(s) 365, 623, 690, 810, 818
GluI GCNGC 1 cut(s) 620
HgaI GACGC 3 cut(s) 238, 886, 1515
Hin1I GRCGYC 1 cut(s) 897
Hin1II CATG 5 cut(s) 210, 337, 754, 1186, 1426
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 632
HpaI GTTAAC 1 cut(s) 372
HphI GGTGA 2 cut(s) 280, 682
Hpy166II GTNNAC 2 cut(s) 372, 975
Hpy188I TCNGA 2 cut(s) 66, 1158
Hpy8I GTNNAC 2 cut(s) 372, 975
HpyAV CCTTC 4 cut(s) 327, 632, 1013, 1400
HpyCH4III ACNGT 3 cut(s) 202, 862, 984
HpyCH4IV ACGT 3 cut(s) 826, 873, 1415
HpyCH4V TGCA 2 cut(s) 161, 1350
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 648
HpyF3I CTNAG 8 cut(s) 14, 451, 507, 560, 615, 714, 1155, 1251
HpySE526I ACGT 3 cut(s) 826, 873, 1415
Hsp92I GRCGYC 1 cut(s) 897
Hsp92II CATG 5 cut(s) 210, 337, 754, 1186, 1426
KpnI GGTACC 1 cut(s) 1297
Ksp22I TGATCA 1 cut(s) 753
KspAI GTTAAC 1 cut(s) 372
Kzo9I GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
LmnI GCTCC 1 cut(s) 547
Lsp1109I GCAGC 1 cut(s) 606
LweI GCATC 2 cut(s) 183, 804
MaeI CTAG 5 cut(s) 365, 623, 690, 810, 818
MaeII ACGT 3 cut(s) 826, 873, 1415
MaeIII GTNAC 7 cut(s) 202, 709, 951, 1193, 1352, 1382, 1459
MalI GATC 6 cut(s) 105, 475, 755, 1014, 1160, 1395
MboI GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
MboII GAAGA 5 cut(s) 162, 238, 1198, 1484, 1487
MfeI CAATTG 1 cut(s) 1345
MflI RGATCY 2 cut(s) 103, 1158
MhlI GDGCHC 1 cut(s) 653
MlyI GAGTC 4 cut(s) 61, 561, 694, 1283
MmeI TCCRAC 3 cut(s) 724, 820, 1436
MroXI GAANNNNTTC 2 cut(s) 26, 1337
MseI TTAA 6 cut(s) 371, 495, 552, 630, 864, 1065
MslI CAYNNNNRTG 2 cut(s) 522, 680
MspCI CTTAAG 1 cut(s) 1064
MspR9I CCNGG 1 cut(s) 1446
MunI CAATTG 1 cut(s) 1345
MvaI CCWGG 1 cut(s) 1446
MvnI CGCG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 158, 648
NdeII GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
NlaIII CATG 5 cut(s) 210, 337, 754, 1186, 1426
NlaIV GGNNCC 3 cut(s) 748, 1295, 1340
NmuCI GTSAC 3 cut(s) 202, 1352, 1459
OliI CACNNNNGTG 1 cut(s) 522
PaeR7I CTCGAG 2 cut(s) 469, 851
PagI TCATGA 1 cut(s) 1182
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PdmI GAANNNNTTC 2 cut(s) 26, 1337
PfeI GAWTC 6 cut(s) 244, 433, 465, 1281, 1317, 1362
PflFI GACNNNGTC 1 cut(s) 51
PkrI GCNGC 1 cut(s) 621
PleI GAGTC 4 cut(s) 60, 561, 693, 1282
PpsI GAGTC 4 cut(s) 60, 561, 693, 1282
PshAI GACNNNNGTC 1 cut(s) 699
Psp1406I AACGTT 2 cut(s) 826, 1415
Psp6I CCWGG 1 cut(s) 1444
PspEI GGTNACC 1 cut(s) 951
PspGI CCWGG 1 cut(s) 1444
PspN4I GGNNCC 3 cut(s) 748, 1295, 1340
PspPI GGNCC 2 cut(s) 701, 1409
PstNI CAGNNNCTG 1 cut(s) 1403
PsuI RGATCY 2 cut(s) 103, 1158
PsyI GACNNNGTC 1 cut(s) 51
RsaI GTAC 5 cut(s) 188, 986, 1247, 1256, 1295
RsaNI GTAC 5 cut(s) 187, 985, 1246, 1255, 1294
RseI CAYNNNNRTG 2 cut(s) 522, 680
SaqAI TTAA 6 cut(s) 371, 495, 552, 630, 864, 1065
SatI GCNGC 1 cut(s) 620
Sau3AI GATC 6 cut(s) 103, 473, 753, 1012, 1158, 1393
Sau96I GGNCC 2 cut(s) 701, 1409
ScaI AGTACT 2 cut(s) 986, 1256
SchI GAGTC 4 cut(s) 61, 561, 694, 1283
ScrFI CCNGG 1 cut(s) 1446
SduI GDGCHC 1 cut(s) 653
SfaNI GCATC 2 cut(s) 183, 804
SfcI CTRYAG 3 cut(s) 198, 1304, 1501
Sfr274I CTCGAG 2 cut(s) 469, 851
SinI GGWCC 2 cut(s) 701, 1409
SlaI CTCGAG 2 cut(s) 469, 851
SmiMI CAYNNNNRTG 2 cut(s) 522, 680
SmlI CTYRAG 5 cut(s) 269, 469, 851, 1004, 1064
SmoI CTYRAG 5 cut(s) 269, 469, 851, 1004, 1064
SspMI CTAG 5 cut(s) 365, 623, 690, 810, 818
StyD4I CCNGG 1 cut(s) 1444
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 3 cut(s) 202, 862, 984
TaiI ACGT 3 cut(s) 829, 876, 1418
TaqI TCGA 6 cut(s) 137, 470, 476, 570, 852, 1365
TaqII GACCGA 2 cut(s) 1226, 1240
TatI WGTACW 2 cut(s) 984, 1254
TfiI GAWTC 6 cut(s) 244, 433, 465, 1281, 1317, 1362
Tru1I TTAA 6 cut(s) 371, 495, 552, 630, 864, 1065
Tru9I TTAA 6 cut(s) 371, 495, 552, 630, 864, 1065
TscAI CASTG 3 cut(s) 82, 963, 1357
TseFI GTSAC 3 cut(s) 202, 1352, 1459
TseI GCWGC 1 cut(s) 619
Tsp45I GTSAC 3 cut(s) 202, 1352, 1459
TspDTI ATGAA 9 cut(s) 309, 620, 819, 1097, 1199, 1244, 1317, 1378, 1506
TspRI CASTG 3 cut(s) 82, 963, 1357
Tth111I GACNNNGTC 1 cut(s) 51
Vha464I CTTAAG 1 cut(s) 1064
VpaK11BI GGWCC 2 cut(s) 701, 1409
XapI RAATTY 3 cut(s) 427, 488, 942
XhoI CTCGAG 2 cut(s) 469, 851
XmaJI CCTAGG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 974
XmnI GAANNNNTTC 2 cut(s) 26, 1337
XspI CTAG 5 cut(s) 365, 623, 690, 810, 818
ZrmI AGTACT 2 cut(s) 986, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.