Rw0G013690
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00614
OG0014188
Physical Location & Seq
Forward (+)
22290 .. 23829
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G013690.1

Sequence Viewer

Length: 1326 bp
ATGATTACCTCGCAGCTAAGAGGAAGAGGAAGCAAACCCATCACCAAAATCGCCAAAGTCTTCCTCCAAAACCCACACAAACTCAATCCCATATCCCCACCAACCCAATCCCACCAGAACCCATGTGCCCCACTCTCCCATACCCAAAACCCTTTATGGGTTTCACAGAGCTGTGACTACTCAACGCAGTCCTCTAAGTTTCCCGAGTATGAAATGCCCTCAGTCACTTGGGGCGTGGTCCAAGGCCGCAAAGAGAAGCTTGTCTCTAGAGTCATAATATGTGACTATTTGAAGAGTATAGGCATAGTTCCCGATGAATTGGAGAACTTGGAGCTACCCTCTACTGTTGATGTCATGAGGGAAAGAGTTGAGTTCCTACAGAAGCTAGGATTGTCGATTGACGACATTAACGAGTACCCTTTGATGCTCGGATGCAGTGTCAGGAAAAACATGATACCCGTGTTGGCTTACTTGGAGAAAATTGGGATTCAGAGGTCGAAGCTAGGTGAGTTTGTTAAGAATTACCCGCAAGTGTTACACGCTAGTGTGGTAGTTGAGCTTGTTCCGGGTGATCAATTTCCTTCGGGCTCGATGTCCCATGGTCACCCAGTATCCTTACCTATTGGGCATGGAGTTGGGACTGTGATTAAGCCTTTTACTATTAAGCCTAATGTGGATTGTTTGGTTGCTTTTGGGATCAGGAGGGAAGCACTTGCTTCTATTGTTGCTCAATACCCCCAAATTCTTGGGCAGCCTTTGAAAGCTAAAATGTCTTCACAGCAGTTTTTCTTCAGTGTGAAGCTTAAAATTGATCCTGAAGGGTTTGCACGGGTGATAGAGAAGATGCCGCAGATAGTCAGCCTTCATCAACATGTGATAATGAAGCCTGTTGAGTTCCTTCTTGGACGGGGGATACCTTCAGAAGATGTAGCTAAGATGGTCGTAAAGTGTCCCCAATTAGTGGCACTGCGTGTTGAGCTCATGAAGAACAGTTATTACTTTTTTAAGAGTGAAATGGGGAGACCAGTGAAAGAGCTTGTGGAATTTCCGGAATACTTTACATATAGTTTAGAATCCAGGATCAAACCTAGGTACCAGAGGTTGCAAAGCAAGGGGATTAGGTGTTCTTTGAAATGGTTCCTCAACTGTAGCGATCAGAGATTTGAGGAGAGGTTGCAAGGGGAGTACATTGAAACAGAGATTTCTGGTCCATCATTTTGTATGGGAGGGAAGTTAGAGCTACCTGGGGTTGGAAATGAGATGGTGTCAGATGGGGAAGACGAGAGTGATGATGAAATACTTTACAGACGCACTGTATCCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

441

Amino Acids

49.78

Weight (kDa)

8.43

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 212 - 389 9.1e-63 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44020
fragaria_vesca FvH4_1g27350 FvH4_1g27350 FvH4_1g27350 FvH4_1g27350
malus_domestica MD07G1031000.v1.1
prunus_persica Prupe.8G049300_v2.0.a1
pyrus_communis pycom07g02260
rosa_chinensis RchiOBHm_Chr3g0488701
rosa_laevigata RLG00000022930
rosa_multiflora Rmu_sc0001208.1_g000078
rosa_samantha Rh3AG289100 Rh3BG325900 Rh3CG323400 Rh3DG321900
rosa_wichuraiana Rw0G013690 Rw3G025590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1092
AccB1I GGYRCC 1 cut(s) 1092
AccB7I CCANNNNNTGG 1 cut(s) 961
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 3 cut(s) 247, 527, 848
AclWI GGATC 3 cut(s) 704, 806, 1088
AcsI RAATTY 2 cut(s) 741, 1043
AcuI CTGAAG 3 cut(s) 775, 837, 903
AdeI CACNNNGTG 1 cut(s) 971
AfaI GTAC 3 cut(s) 416, 1094, 1187
AfiI CCNNNNNNNGG 3 cut(s) 157, 961, 1250
AflIII ACRYGT 1 cut(s) 871
AgsI TTSAA 4 cut(s) 292, 760, 1132, 1193
AjnI CCWGG 2 cut(s) 1076, 1243
AleI CACNNNNGTG 1 cut(s) 543
AloI GAACNNNNNNTCC 2 cut(s) 1108, 1140
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 2 cut(s) 268, 1015
AlwI GGATC 3 cut(s) 704, 806, 1088
Ama87I CYCGRG 1 cut(s) 203
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 1 cut(s) 244
ApeKI GCWGC 2 cut(s) 13, 751
ApoI RAATTY 2 cut(s) 741, 1043
Asp700I GAANNNNTTC 1 cut(s) 1136
Asp718I GGTACC 1 cut(s) 1092
AspA2I CCTAGG 1 cut(s) 1088
AspS9I GGNCC 2 cut(s) 238, 1208
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 5 cut(s) 34, 518, 581, 596, 844
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 2 cut(s) 238, 1208
AvrII CCTAGG 1 cut(s) 1088
BaeGI GKGCMC 1 cut(s) 130
BaeI ACNNNNGTAYC 4 cut(s) 446, 479, 1076, 1109
BanI GGYRCC 1 cut(s) 1092
BanII GRGCYC 2 cut(s) 590, 981
BbsI GAAGAC 3 cut(s) 52, 765, 1284
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 2 cut(s) 25, 763
BccI CCATC 5 cut(s) 47, 931, 1219, 1255, 1265
BciT130I CCWGG 2 cut(s) 1078, 1245
BciVI GTATCC 2 cut(s) 622, 906
BclI TGATCA 1 cut(s) 571
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 2 cut(s) 268, 1015
BfaI CTAG 5 cut(s) 267, 386, 503, 543, 1089
BfmI CTRYAG 3 cut(s) 377, 1147, 1322
BfuI GTATCC 2 cut(s) 622, 906
BisI GCNGC 4 cut(s) 14, 247, 752, 848
BlnI CCTAGG 1 cut(s) 1088
BlsI GCNGC 4 cut(s) 15, 248, 753, 849
Bme1390I CCNGG 3 cut(s) 567, 1078, 1245
Bme18I GGWCC 2 cut(s) 238, 1208
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 238, 1208
BmiI GGNNCC 2 cut(s) 1094, 1139
BmrFI CCNGG 3 cut(s) 567, 1078, 1245
BmrI ACTGGG 1 cut(s) 602
BmsI GCATC 3 cut(s) 414, 422, 834
BmuI ACTGGG 1 cut(s) 602
BpiI GAAGAC 3 cut(s) 52, 765, 1284
BplI GAGNNNNNCTC 2 cut(s) 323, 355
BpuMI CCSGG 1 cut(s) 567
BsaI GGTCTC 1 cut(s) 1015
BsaJI CCNNGG 4 cut(s) 241, 598, 1088, 1244
BsaWI WCCGGW 1 cut(s) 1048
Bsc4I CCNNNNNNNGG 3 cut(s) 157, 961, 1250
Bse1I ACTGG 2 cut(s) 608, 1025
BseAI TCCGGA 1 cut(s) 1048
BseBI CCWGG 2 cut(s) 1078, 1245
BseDI CCNNGG 4 cut(s) 241, 598, 1088, 1244
BseGI GGATG 1 cut(s) 437
BseLI CCNNNNNNNGG 3 cut(s) 157, 961, 1250
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 608, 1025
BseRI GAGGAG 1 cut(s) 1181
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 2 cut(s) 25, 763
BshFI GGCC 1 cut(s) 246
BshNI GGYRCC 1 cut(s) 1092
BsiHKAI GWGCWC 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 566, 1049
BslFI GGGAC 3 cut(s) 580, 652, 936
BslI CCNNNNNNNGG 3 cut(s) 157, 961, 1250
BsmAI GTCTC 2 cut(s) 268, 1015
BsmFI GGGAC 3 cut(s) 580, 652, 936
BsnI GGCC 1 cut(s) 246
Bso31I GGTCTC 1 cut(s) 1015
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 130, 590, 981
Bsp13I TCCGGA 1 cut(s) 1048
Bsp143I GATC 5 cut(s) 571, 696, 811, 1080, 1153
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 3 cut(s) 247, 527, 848
BspANI GGCC 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 233
BspEI TCCGGA 1 cut(s) 1048
BspHI TCATGA 2 cut(s) 354, 981
BspLI GGNNCC 2 cut(s) 1094, 1139
BspPI GGATC 3 cut(s) 704, 806, 1088
BspT107I GGYRCC 1 cut(s) 1092
BspTNI GGTCTC 1 cut(s) 1015
BsrI ACTGG 2 cut(s) 608, 1025
BssECI CCNNGG 4 cut(s) 241, 598, 1088, 1244
BssMI GATC 5 cut(s) 571, 696, 811, 1080, 1153
BssT1I CCWWGG 3 cut(s) 241, 598, 1088
Bst2UI CCWGG 2 cut(s) 1078, 1245
Bst4CI ACNGT 5 cut(s) 346, 643, 992, 1148, 1315
Bst6I CTCTTC 2 cut(s) 19, 287
BstDEI CTNAG 4 cut(s) 17, 195, 220, 933
BstDSI CCRYGG 1 cut(s) 598
BstEII GGTNACC 1 cut(s) 602
BstF5I GGATG 1 cut(s) 437
BstKTI GATC 5 cut(s) 574, 699, 814, 1083, 1156
BstMAI GTCTC 2 cut(s) 268, 1015
BstMBI GATC 5 cut(s) 571, 696, 811, 1080, 1153
BstMWI GCNNNNNNNGC 1 cut(s) 976
BstNI CCWGG 2 cut(s) 1078, 1245
BstNSI RCATGY 1 cut(s) 875
BstPI GGTNACC 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 565, 1076, 1243
BstSFI CTRYAG 3 cut(s) 377, 1147, 1322
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 25, 763
BstV2I GAAGAC 3 cut(s) 52, 765, 1284
BstXI CCANNNNNNTGG 1 cut(s) 746
BsuI GTATCC 2 cut(s) 622, 906
BsuRI GGCC 1 cut(s) 246
BtgI CCRYGG 1 cut(s) 598
BtsCI GGATG 1 cut(s) 437
BtsI GCAGTG 2 cut(s) 442, 965
BtsIMutI CAGTG 5 cut(s) 442, 799, 965, 1032, 1311
CciI TCATGA 2 cut(s) 354, 981
Cfr13I GGNCC 2 cut(s) 238, 1208
CseI GACGC 1 cut(s) 1317
Csp6I GTAC 3 cut(s) 415, 1093, 1186
CviAII CATG 7 cut(s) 123, 355, 451, 599, 629, 872, 982
CviQI GTAC 3 cut(s) 415, 1093, 1186
DdeI CTNAG 4 cut(s) 17, 195, 220, 933
DpnI GATC 5 cut(s) 573, 698, 813, 1082, 1155
DpnII GATC 5 cut(s) 571, 696, 811, 1080, 1153
DraIII CACNNNGTG 1 cut(s) 971
Eam1104I CTCTTC 2 cut(s) 19, 287
EarI CTCTTC 2 cut(s) 19, 287
Ecl136II GAGCTC 1 cut(s) 979
Eco130I CCWWGG 3 cut(s) 241, 598, 1088
Eco24I GRGCYC 2 cut(s) 590, 981
Eco31I GGTCTC 1 cut(s) 1015
Eco47I GGWCC 2 cut(s) 238, 1208
Eco53kI GAGCTC 1 cut(s) 979
Eco57I CTGAAG 3 cut(s) 775, 837, 903
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 602
EcoICRI GAGCTC 1 cut(s) 979
EcoO65I GGTNACC 1 cut(s) 602
EcoRII CCWGG 2 cut(s) 1076, 1243
EcoT14I CCWWGG 3 cut(s) 241, 598, 1088
EcoT38I GRGCYC 2 cut(s) 590, 981
ErhI CCWWGG 3 cut(s) 241, 598, 1088
FaeI CATG 7 cut(s) 126, 358, 454, 602, 632, 875, 985
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FaqI GGGAC 3 cut(s) 580, 652, 936
FatI CATG 7 cut(s) 122, 354, 450, 598, 628, 871, 981
FauI CCCGC 1 cut(s) 534
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 14, 247, 752, 848
FokI GGATG 1 cut(s) 444
FriOI GRGCYC 2 cut(s) 590, 981
Fsp4HI GCNGC 4 cut(s) 14, 247, 752, 848
FspBI CTAG 5 cut(s) 267, 386, 503, 543, 1089
GluI GCNGC 4 cut(s) 14, 247, 752, 848
HaeIII GGCC 1 cut(s) 246
HapII CCGG 2 cut(s) 566, 1049
HgaI GACGC 1 cut(s) 1317
Hin1II CATG 7 cut(s) 126, 358, 454, 602, 632, 875, 985
HindIII AAGCTT 2 cut(s) 257, 800
HinfI GANTC 3 cut(s) 270, 487, 1073
HpaII CCGG 2 cut(s) 566, 1049
HphI GGTGA 5 cut(s) 34, 518, 581, 596, 844
Hpy188I TCNGA 5 cut(s) 431, 492, 922, 1158, 1270
Hpy188III TCNNGA 9 cut(s) 203, 267, 311, 355, 442, 700, 815, 982, 1049
HpyAV CCTTC 5 cut(s) 591, 812, 872, 908, 927
HpyCH4III ACNGT 5 cut(s) 346, 643, 992, 1148, 1315
HpyCH4V TGCA 4 cut(s) 435, 827, 1105, 1177
HpyF10VI GCNNNNNNNGC 1 cut(s) 976
HpyF3I CTNAG 4 cut(s) 17, 195, 220, 933
Hsp92II CATG 7 cut(s) 126, 358, 454, 602, 632, 875, 985
Kpn2I TCCGGA 1 cut(s) 1048
KpnI GGTACC 1 cut(s) 1096
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 5 cut(s) 571, 696, 811, 1080, 1153
LmnI GCTCC 1 cut(s) 331
Lsp1109I GCAGC 2 cut(s) 25, 763
LweI GCATC 3 cut(s) 414, 422, 834
MaeI CTAG 5 cut(s) 267, 386, 503, 543, 1089
MaeIII GTNAC 5 cut(s) 173, 223, 281, 534, 602
MalI GATC 5 cut(s) 573, 698, 813, 1082, 1155
MboI GATC 5 cut(s) 571, 696, 811, 1080, 1153
MboII GAAGA 9 cut(s) 36, 52, 304, 765, 781, 853, 935, 997, 1289
MhlI GDGCHC 3 cut(s) 130, 590, 981
MluCI AATT 8 cut(s) 317, 480, 520, 575, 741, 807, 956, 1043
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 1231
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 1136
MseI TTAA 6 cut(s) 408, 516, 648, 663, 804, 1005
MslI CAYNNNNRTG 2 cut(s) 543, 870
MspI CCGG 2 cut(s) 566, 1049
MspR9I CCNGG 3 cut(s) 567, 1078, 1245
MvaI CCWGG 2 cut(s) 1078, 1245
MwoI GCNNNNNNNGC 1 cut(s) 976
NciI CCSGG 1 cut(s) 567
NcoI CCATGG 1 cut(s) 598
NdeII GATC 5 cut(s) 571, 696, 811, 1080, 1153
NlaIII CATG 7 cut(s) 126, 358, 454, 602, 632, 875, 985
NlaIV GGNNCC 2 cut(s) 1094, 1139
NmuCI GTSAC 4 cut(s) 173, 223, 281, 602
NspI RCATGY 1 cut(s) 875
OliI CACNNNNGTG 1 cut(s) 543
PagI TCATGA 2 cut(s) 354, 981
PciI ACATGT 1 cut(s) 871
PcsI WCGNNNNNNNCGW 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 1136
PfeI GAWTC 2 cut(s) 487, 1073
PflMI CCANNNNNTGG 1 cut(s) 961
PfoI TCCNGGA 1 cut(s) 1076
PkrI GCNGC 4 cut(s) 15, 248, 753, 849
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PscI ACATGT 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 981
Psp6I CCWGG 2 cut(s) 1076, 1243
PspEI GGTNACC 1 cut(s) 602
PspGI CCWGG 2 cut(s) 1076, 1243
PspN4I GGNNCC 2 cut(s) 1094, 1139
PspPI GGNCC 2 cut(s) 238, 1208
PsrI GAACNNNNNNTAC 2 cut(s) 980, 1012
RsaI GTAC 3 cut(s) 416, 1094, 1187
RsaNI GTAC 3 cut(s) 415, 1093, 1186
RseI CAYNNNNRTG 2 cut(s) 543, 870
SacI GAGCTC 1 cut(s) 981
SaqAI TTAA 6 cut(s) 408, 516, 648, 663, 804, 1005
SatI GCNGC 4 cut(s) 14, 247, 752, 848
Sau3AI GATC 5 cut(s) 571, 696, 811, 1080, 1153
Sau96I GGNCC 2 cut(s) 238, 1208
SchI GAGTC 1 cut(s) 279
ScrFI CCNGG 3 cut(s) 567, 1078, 1245
SduI GDGCHC 3 cut(s) 130, 590, 981
SfaNI GCATC 3 cut(s) 414, 422, 834
SfcI CTRYAG 3 cut(s) 377, 1147, 1322
SinI GGWCC 2 cut(s) 238, 1208
SmiMI CAYNNNNRTG 2 cut(s) 543, 870
Sse9I AATT 8 cut(s) 317, 480, 520, 575, 741, 807, 956, 1043
SsiI CCGC 3 cut(s) 247, 527, 848
SspMI CTAG 5 cut(s) 267, 386, 503, 543, 1089
SstI GAGCTC 1 cut(s) 981
StyD4I CCNGG 3 cut(s) 565, 1076, 1243
StyI CCWWGG 3 cut(s) 241, 598, 1088
TaaI ACNGT 5 cut(s) 346, 643, 992, 1148, 1315
TaqI TCGA 3 cut(s) 395, 497, 590
TasI AATT 8 cut(s) 317, 480, 520, 575, 741, 807, 956, 1043
TatI WGTACW 1 cut(s) 1185
TauI GCSGC 2 cut(s) 249, 850
TfiI GAWTC 2 cut(s) 487, 1073
Tru1I TTAA 6 cut(s) 408, 516, 648, 663, 804, 1005
Tru9I TTAA 6 cut(s) 408, 516, 648, 663, 804, 1005
TscAI CASTG 5 cut(s) 442, 799, 972, 1032, 1318
TseFI GTSAC 4 cut(s) 173, 223, 281, 602
TseI GCWGC 2 cut(s) 13, 751
Tsp45I GTSAC 4 cut(s) 173, 223, 281, 602
TspDTI ATGAA 6 cut(s) 225, 330, 854, 896, 998, 1308
TspRI CASTG 5 cut(s) 442, 799, 972, 1032, 1318
Van91I CCANNNNNTGG 1 cut(s) 961
VpaK11BI GGWCC 2 cut(s) 238, 1208
XapI RAATTY 2 cut(s) 741, 1043
XbaI TCTAGA 1 cut(s) 266
XceI RCATGY 1 cut(s) 875
XmaJI CCTAGG 1 cut(s) 1088
XmnI GAANNNNTTC 1 cut(s) 1136
XspI CTAG 5 cut(s) 267, 386, 503, 543, 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.