FvH4_1g27350
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014188
Physical Location & Seq
Forward (+)
19049105 .. 19053355
4251 bp
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UTR
Exon/CDS
Intron
FvH4_1g27350.t1

Sequence Viewer

Length: 1512 bp
ATGATTGCCTCACAGCTAAGAGGAGGAAGAGCAACCAAACCCATCACCCAAATCGCTAAAATCTTGCTCCAAAACCCACAGAAACACACTCCCATATCACCACCAACCCAATGCCACCACAACCCTCCATGGGTTTTACAGACCTCTGTCTATTCAACCCAGTTTCCTGAGTATGAGATGCCCTCAGTCACTTGGGGTGTTGTCCAAGGCCGCAAAGAGAGGCTTGTCTCTAGAGTCATAATATGCGACTATTTGAAGAGTTTAGGCATAGTTCCAGATGAATTGGAGAACTTGGAGCTACCCTCTACTGTTGAGGTTATGAGGGAAAGAGTTGAGTTCCTACAGAAGCTAGGACTGTCGATCGACGACATTAACGAGTACCCTTTGATGCTTGGATGTAGTGTGAGGAAAAATATGGTACCTGTGTTGGCTTACTTGGAGAAAATTGGGATTCAAAGGTCGAAGCTCTGTGAGTTTGTTAACAACTACCCACAAGTGTTACATGCTAGTGTGGTAGTTGAGCTTGTTCCGGTGATCAAGTTCCTTCGTGGGCTCGATGTGGAGAAGATGGATATTGGCTATGTGTTGCAGAAGTATCCAGAGCTTCTCGGATATAAGCTTGAGGGGACTATGAGTACTTCTGTTGCATATCTTGTTAGTATTGGTGTTACTCCTAGGGATATAGGTCCCATGGTGACTCAGTATCCTTACCTTTTGGGTATGAGAGTTGGGACTGTGATAAAGCCTTTTGTTGATTATTTGGTTTCCTTAGGTTTGCCAAAAAAGATTTTGGCTAGGATGTTGGAGAAGCGTGCATATTTATTTGGTTATGATCTTGAGGAGACTATTAAGCCTAATGTGGATTGTTTGGTTGCTTTTGGGATCAGGAGGGAAGGACTTGCTTCTATTGTTGCTCAATACCCCCAAATTCTTGGGCAGCCTCTGAAAGCTAAAATGTCTTCACAGCAGTTCTTCTTCAGTATGAAGCTTAAAATTGATCCTGAAGGGTTTGCAAGGGTGATAGAGAAGATGCCGCAGATAGTAAGCCTTAATCAACATGTGATAATGAAGCCTGTTGAGTTCCTTCTTGGACGGGGCATACCTTCAGAAGATGTAGCCAAGATGGTTGTAAAGTGTCCCCAATTAGTGGCTCTGCGTGTTGAGCTCATGAAGAACAGTTATTACTTTTTTAAGAGCGAAATTGGGAGACCAGTGAAAGAGCTTGTGGAATTTCCGGAATACTTTACTTATAGTTTAGAATCCAGGATCAAACCTAGATACCAGAGGTTGAAAAGCAAGGGGATCAGGTGTTCTTTGAAGTGGTTCCTCAACTGCAGCGATCTGAGATTTGAGGAGAGGTTGCAAGGGGAGTACATTGAAACAGAGATTTCTGGTCCATCATTTTGTATGGGAGGGAAGTTAGAGCTACCTGGGGTTGGAAATGAAATGGTGTCAGACGAGGAAGGCGAGAATGAAGATGAAATACTTTACAGACGCACTGTTTCCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

504

Amino Acids

57.31

Weight (kDa)

8.52

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 143 - 451 2e-109 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G44020
fragaria_vesca FvH4_1g27350 FvH4_1g27350 FvH4_1g27350 FvH4_1g27350
malus_domestica MD07G1031000.v1.1
prunus_persica Prupe.8G049300_v2.0.a1
pyrus_communis pycom07g02260
rosa_chinensis RchiOBHm_Chr3g0488701
rosa_laevigata RLG00000022930
rosa_multiflora Rmu_sc0001208.1_g000078
rosa_samantha Rh3AG289100 Rh3BG325900 Rh3CG323400 Rh3DG321900
rosa_wichuraiana Rw0G013690 Rw3G025590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 1147
AccIII TCCGGA 1 cut(s) 1234
AciI CCGC 2 cut(s) 211, 1034
AclWI GGATC 4 cut(s) 890, 992, 1274, 1310
AcsI RAATTY 2 cut(s) 927, 1229
AcuI CTGAAG 3 cut(s) 961, 1023, 1089
AfaI GTAC 4 cut(s) 380, 420, 637, 1373
AfiI CCNNNNNNNGG 3 cut(s) 130, 1147, 1436
AflIII ACRYGT 1 cut(s) 1057
AgsI TTSAA 6 cut(s) 156, 256, 455, 1291, 1318, 1379
AjnI CCWGG 2 cut(s) 1262, 1429
AloI GAACNNNNNNTCC 2 cut(s) 1294, 1326
Alw21I GWGCWC 1 cut(s) 1167
Alw26I GTCTC 3 cut(s) 232, 836, 1201
AlwI GGATC 4 cut(s) 890, 992, 1274, 1310
AlwNI CAGNNNCTG 1 cut(s) 943
Aor13HI TCCGGA 1 cut(s) 1234
AoxI GGCC 1 cut(s) 208
ApeKI GCWGC 2 cut(s) 937, 1335
ApoI RAATTY 2 cut(s) 927, 1229
Asp700I GAANNNNTTC 1 cut(s) 1322
Asp718I GGTACC 1 cut(s) 418
AspA2I CCTAGG 1 cut(s) 674
AspS9I GGNCC 2 cut(s) 686, 1394
AsuHPI GGTGA 5 cut(s) 37, 90, 544, 706, 1030
AvaII GGWCC 2 cut(s) 686, 1394
AvrII CCTAGG 1 cut(s) 674
AxyI CCTNAGG 1 cut(s) 769
BaeI ACNNNNGTAYC 2 cut(s) 410, 443
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 2 cut(s) 555, 1167
BarI GAAGNNNNNNTAC 2 cut(s) 1467, 1499
BbsI GAAGAC 1 cut(s) 951
Bbv12I GWGCWC 1 cut(s) 1167
BbvI GCAGC 2 cut(s) 949, 1347
BccI CCATC 4 cut(s) 50, 562, 1117, 1405
BciT130I CCWGG 2 cut(s) 1264, 1431
BciVI GTATCC 2 cut(s) 606, 714
BclI TGATCA 1 cut(s) 534
BcoDI GTCTC 3 cut(s) 232, 836, 1201
BfaI CTAG 6 cut(s) 231, 350, 507, 675, 795, 1275
BfmI CTRYAG 3 cut(s) 341, 1333, 1508
BfuI GTATCC 2 cut(s) 606, 714
BisI GCNGC 4 cut(s) 211, 938, 1034, 1336
BlnI CCTAGG 1 cut(s) 674
BlsI GCNGC 4 cut(s) 212, 939, 1035, 1337
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 1264, 1431
Bme18I GGWCC 2 cut(s) 686, 1394
BmgT120I GGNCC 2 cut(s) 686, 1394
BmiI GGNNCC 3 cut(s) 420, 688, 1325
BmrFI CCNGG 2 cut(s) 1264, 1431
BmrI ACTGGG 1 cut(s) 154
BmsI GCATC 3 cut(s) 168, 378, 1020
BmuI ACTGGG 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 951
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 287, 319
BpuEI CTTGAG 2 cut(s) 641, 857
BsaI GGTCTC 1 cut(s) 1201
BsaJI CCNNGG 5 cut(s) 128, 205, 674, 690, 1430
BsaWI WCCGGW 2 cut(s) 529, 1234
Bsc4I CCNNNNNNNGG 3 cut(s) 130, 1147, 1436
Bse1I ACTGG 2 cut(s) 160, 1211
Bse21I CCTNAGG 1 cut(s) 769
BseAI TCCGGA 1 cut(s) 1234
BseBI CCWGG 2 cut(s) 1264, 1431
BseDI CCNNGG 5 cut(s) 128, 205, 674, 690, 1430
BseGI GGATG 2 cut(s) 401, 804
BseLI CCNNNNNNNGG 3 cut(s) 130, 1147, 1436
BseMII CTCAG 4 cut(s) 159, 198, 713, 1334
BseNI ACTGG 2 cut(s) 160, 1211
BseRI GAGGAG 3 cut(s) 36, 854, 1367
BseXI GCAGC 2 cut(s) 949, 1347
Bsh1285I CGRYCG 1 cut(s) 363
BshFI GGCC 1 cut(s) 210
BshNI GGYRCC 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 363
BsiHKAI GWGCWC 1 cut(s) 1167
BsiSI CCGG 2 cut(s) 530, 1235
BslFI GGGAC 4 cut(s) 640, 672, 745, 1122
BslI CCNNNNNNNGG 3 cut(s) 130, 1147, 1436
BsmAI GTCTC 3 cut(s) 232, 836, 1201
BsmFI GGGAC 4 cut(s) 640, 672, 745, 1122
BsnI GGCC 1 cut(s) 210
Bso31I GGTCTC 1 cut(s) 1201
Bsp1286I GDGCHC 2 cut(s) 555, 1167
Bsp13I TCCGGA 1 cut(s) 1234
Bsp143I GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
Bsp19I CCATGG 2 cut(s) 128, 690
BspACI CCGC 2 cut(s) 211, 1034
BspANI GGCC 1 cut(s) 210
BspCNI CTCAG 4 cut(s) 160, 197, 712, 1335
BspEI TCCGGA 1 cut(s) 1234
BspHI TCATGA 1 cut(s) 1167
BspLI GGNNCC 3 cut(s) 420, 688, 1325
BspMAI CTGCAG 1 cut(s) 1337
BspPI GGATC 4 cut(s) 890, 992, 1274, 1310
BspQI GCTCTTC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 418
BspTNI GGTCTC 1 cut(s) 1201
BsrI ACTGG 2 cut(s) 160, 1211
BssECI CCNNGG 5 cut(s) 128, 205, 674, 690, 1430
BssMI GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
BssT1I CCWWGG 4 cut(s) 128, 205, 674, 690
Bst2UI CCWGG 2 cut(s) 1264, 1431
Bst4CI ACNGT 5 cut(s) 310, 357, 736, 1178, 1501
Bst6I CTCTTC 2 cut(s) 22, 251
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 6 cut(s) 17, 168, 184, 699, 769, 1343
BstDSI CCRYGG 2 cut(s) 128, 690
BstF5I GGATG 2 cut(s) 401, 804
BstKTI GATC 8 cut(s) 363, 537, 835, 885, 1000, 1269, 1305, 1342
BstMAI GTCTC 3 cut(s) 232, 836, 1201
BstMBI GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
BstMCI CGRYCG 1 cut(s) 363
BstMWI GCNNNNNNNGC 1 cut(s) 1162
BstNI CCWGG 2 cut(s) 1264, 1431
BstNSI RCATGY 2 cut(s) 506, 1061
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 1262, 1429
BstSFI CTRYAG 3 cut(s) 341, 1333, 1508
BstV1I GCAGC 2 cut(s) 949, 1347
BstV2I GAAGAC 1 cut(s) 951
BstXI CCANNNNNNTGG 1 cut(s) 932
Bsu36I CCTNAGG 1 cut(s) 769
BsuI GTATCC 2 cut(s) 606, 714
BsuRI GGCC 1 cut(s) 210
BtgI CCRYGG 2 cut(s) 128, 690
BtsCI GGATG 2 cut(s) 401, 804
BtsIMutI CAGTG 2 cut(s) 1218, 1497
Cac8I GCNNGC 1 cut(s) 813
CaiI CAGNNNCTG 1 cut(s) 943
CciI TCATGA 1 cut(s) 1167
Cfr13I GGNCC 2 cut(s) 686, 1394
CseI GACGC 1 cut(s) 1503
Csp6I GTAC 4 cut(s) 379, 419, 636, 1372
CviAII CATG 5 cut(s) 129, 503, 691, 1058, 1168
CviQI GTAC 4 cut(s) 379, 419, 636, 1372
DdeI CTNAG 6 cut(s) 17, 168, 184, 699, 769, 1343
DpnI GATC 8 cut(s) 362, 536, 834, 884, 999, 1268, 1304, 1341
DpnII GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
Eam1104I CTCTTC 2 cut(s) 22, 251
EarI CTCTTC 2 cut(s) 22, 251
Ecl136II GAGCTC 1 cut(s) 1165
Eco130I CCWWGG 4 cut(s) 128, 205, 674, 690
Eco24I GRGCYC 2 cut(s) 555, 1167
Eco31I GGTCTC 1 cut(s) 1201
Eco47I GGWCC 2 cut(s) 686, 1394
Eco53kI GAGCTC 1 cut(s) 1165
Eco57I CTGAAG 3 cut(s) 961, 1023, 1089
Eco81I CCTNAGG 1 cut(s) 769
EcoICRI GAGCTC 1 cut(s) 1165
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 1262, 1429
EcoT14I CCWWGG 4 cut(s) 128, 205, 674, 690
EcoT38I GRGCYC 2 cut(s) 555, 1167
ErhI CCWWGG 4 cut(s) 128, 205, 674, 690
FaeI CATG 5 cut(s) 132, 506, 694, 1061, 1171
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 4 cut(s) 640, 672, 745, 1122
FatI CATG 5 cut(s) 128, 502, 690, 1057, 1167
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 4 cut(s) 211, 938, 1034, 1336
FokI GGATG 2 cut(s) 408, 811
FriOI GRGCYC 2 cut(s) 555, 1167
Fsp4HI GCNGC 4 cut(s) 211, 938, 1034, 1336
FspBI CTAG 6 cut(s) 231, 350, 507, 675, 795, 1275
GluI GCNGC 4 cut(s) 211, 938, 1034, 1336
HaeIII GGCC 1 cut(s) 210
HapII CCGG 2 cut(s) 530, 1235
HgaI GACGC 1 cut(s) 1503
Hin1II CATG 5 cut(s) 132, 506, 694, 1061, 1171
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 2 cut(s) 617, 986
HinfI GANTC 4 cut(s) 234, 451, 697, 1259
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 2 cut(s) 530, 1235
HphI GGTGA 5 cut(s) 37, 90, 544, 706, 1030
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 5 cut(s) 611, 945, 1108, 1344, 1456
Hpy188III TCNNGA 9 cut(s) 167, 231, 275, 599, 836, 886, 1001, 1168, 1235
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 6 cut(s) 554, 887, 998, 1094, 1113, 1457
HpyCH4III ACNGT 5 cut(s) 310, 357, 736, 1178, 1501
HpyCH4V TGCA 6 cut(s) 589, 647, 815, 1013, 1335, 1363
HpyF10VI GCNNNNNNNGC 1 cut(s) 1162
HpyF3I CTNAG 6 cut(s) 17, 168, 184, 699, 769, 1343
Hsp92II CATG 5 cut(s) 132, 506, 694, 1061, 1171
Kpn2I TCCGGA 1 cut(s) 1234
KpnI GGTACC 1 cut(s) 422
Ksp22I TGATCA 1 cut(s) 534
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 2 cut(s) 72, 295
Lsp1109I GCAGC 2 cut(s) 949, 1347
LweI GCATC 3 cut(s) 168, 378, 1020
MaeI CTAG 6 cut(s) 231, 350, 507, 675, 795, 1275
MaeIII GTNAC 4 cut(s) 187, 498, 667, 694
MalI GATC 8 cut(s) 362, 536, 834, 884, 999, 1268, 1304, 1341
MboI GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
MhlI GDGCHC 2 cut(s) 555, 1167
MluCI AATT 7 cut(s) 281, 444, 927, 993, 1142, 1200, 1229
MlyI GAGTC 2 cut(s) 243, 691
MmeI TCCRAC 2 cut(s) 783, 1417
MroI TCCGGA 1 cut(s) 1234
MroXI GAANNNNTTC 1 cut(s) 1322
MseI TTAA 6 cut(s) 372, 480, 849, 990, 1050, 1191
MslI CAYNNNNRTG 1 cut(s) 507
MspI CCGG 2 cut(s) 530, 1235
MspR9I CCNGG 2 cut(s) 1264, 1431
MvaI CCWGG 2 cut(s) 1264, 1431
MwoI GCNNNNNNNGC 1 cut(s) 1162
NcoI CCATGG 2 cut(s) 128, 690
NdeII GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
NlaIII CATG 5 cut(s) 132, 506, 694, 1061, 1171
NlaIV GGNNCC 3 cut(s) 420, 688, 1325
NmuCI GTSAC 2 cut(s) 187, 694
NspI RCATGY 2 cut(s) 506, 1061
PagI TCATGA 1 cut(s) 1167
PciI ACATGT 1 cut(s) 1057
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 372, 1464
PdmI GAANNNNTTC 1 cut(s) 1322
PfeI GAWTC 2 cut(s) 451, 1259
PflMI CCANNNNNTGG 1 cut(s) 1147
PfoI TCCNGGA 1 cut(s) 1262
PkrI GCNGC 4 cut(s) 212, 939, 1035, 1337
Ple19I CGATCG 1 cut(s) 363
PleI GAGTC 2 cut(s) 242, 691
PpsI GAGTC 2 cut(s) 242, 691
PpuMI RGGWCCY 1 cut(s) 686
PscI ACATGT 1 cut(s) 1057
PshAI GACNNNNGTC 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 1167
Psp5II RGGWCCY 1 cut(s) 686
Psp6I CCWGG 2 cut(s) 1262, 1429
PspGI CCWGG 2 cut(s) 1262, 1429
PspN4I GGNNCC 3 cut(s) 420, 688, 1325
PspPI GGNCC 2 cut(s) 686, 1394
PspPPI RGGWCCY 1 cut(s) 686
PsrI GAACNNNNNNTAC 2 cut(s) 1166, 1198
PstI CTGCAG 1 cut(s) 1337
PstNI CAGNNNCTG 1 cut(s) 943
PvuI CGATCG 1 cut(s) 363
RsaI GTAC 4 cut(s) 380, 420, 637, 1373
RsaNI GTAC 4 cut(s) 379, 419, 636, 1372
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 1167
SapI GCTCTTC 1 cut(s) 22
SaqAI TTAA 6 cut(s) 372, 480, 849, 990, 1050, 1191
SatI GCNGC 4 cut(s) 211, 938, 1034, 1336
Sau3AI GATC 8 cut(s) 360, 534, 832, 882, 997, 1266, 1302, 1339
Sau96I GGNCC 2 cut(s) 686, 1394
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 2 cut(s) 243, 691
ScrFI CCNGG 2 cut(s) 1264, 1431
SduI GDGCHC 2 cut(s) 555, 1167
SfaNI GCATC 3 cut(s) 168, 378, 1020
SfcI CTRYAG 3 cut(s) 341, 1333, 1508
SinI GGWCC 2 cut(s) 686, 1394
SmiMI CAYNNNNRTG 1 cut(s) 507
SmlI CTYRAG 2 cut(s) 620, 836
SmoI CTYRAG 2 cut(s) 620, 836
Sse9I AATT 7 cut(s) 281, 444, 927, 993, 1142, 1200, 1229
SsiI CCGC 2 cut(s) 211, 1034
SspMI CTAG 6 cut(s) 231, 350, 507, 675, 795, 1275
SstI GAGCTC 1 cut(s) 1167
StyD4I CCNGG 2 cut(s) 1262, 1429
StyI CCWWGG 4 cut(s) 128, 205, 674, 690
TaaI ACNGT 5 cut(s) 310, 357, 736, 1178, 1501
TaqI TCGA 4 cut(s) 359, 363, 461, 555
TasI AATT 7 cut(s) 281, 444, 927, 993, 1142, 1200, 1229
TatI WGTACW 2 cut(s) 635, 1371
TauI GCSGC 2 cut(s) 213, 1036
TfiI GAWTC 2 cut(s) 451, 1259
Tru1I TTAA 6 cut(s) 372, 480, 849, 990, 1050, 1191
Tru9I TTAA 6 cut(s) 372, 480, 849, 990, 1050, 1191
TscAI CASTG 2 cut(s) 1218, 1504
TseFI GTSAC 2 cut(s) 187, 694
TseI GCWGC 2 cut(s) 937, 1335
Tsp45I GTSAC 2 cut(s) 187, 694
TspDTI ATGAA 7 cut(s) 294, 998, 1082, 1184, 1458, 1488, 1494
TspRI CASTG 2 cut(s) 1218, 1504
Van91I CCANNNNNTGG 1 cut(s) 1147
VpaK11BI GGWCC 2 cut(s) 686, 1394
XapI RAATTY 2 cut(s) 927, 1229
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 2 cut(s) 506, 1061
XmaJI CCTAGG 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 1322
XspI CTAG 6 cut(s) 231, 350, 507, 675, 795, 1275
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.