RLG00000022930
ERF Family

mTERF

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
15307035 .. 15309018
1984 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022930

Sequence Viewer

Length: 1623 bp
ATGGCCAAAGTTTTCGTCCAAAACCCACAGAAACTCACTCCCATATCACCACCAATCCAATCGCACCAGAACCCATGTGCCCCACTCTCCCATACCCAAAACCCTTTATGGGTTTTACAGAGCTGTGACTATTCAACGCAGTCCTCTAAGTTTCCCGAGTATGAAATGCCCTCAGTCACTTGGGGTGTGGTCCAAGGCCGCAAAGAGAAGCTTGTCTCTAGAGTCATAATATGTGACTATTTGAAGAGTATAGGCATAGTTCCTGATGAATTGGAAAACTTGGAGCTACCCTCTACTGTTGAAGTCATGAGGGAAAGAGTTGAGTTCCTACAGAAGCTAGGATTGTCGATTGACGACATTAATGAGTACCCTTTGATGCTCGGATGCAGTGTCAGGAAAAACATGATACCTGTGTTGGCTTACTTGGAGAAAATTGGGATTCAAAGGTCGAAGCTAGGTGAATTTGTTAAGAATTACCCACAAGTGTTACATGCTAGTGTGGTAGTTGAGCTTGTTCCAGTGGTCAAGTTCCTTCGTGGGCTCGATGTGGAGAAGTTGGATATTGGCTATGTCTTGCAGAAGTATCCAGAGCTTCTCGGATATAAGCTTGAGGGGACTATGAGTACTTCTGTTGCGTATCTTGTTAGTATTGGTGTTACTCCTAGGGATATAGGTCCCATGGTCACCCAGTATCCTTACCTATTAGGCATGAGAGTTGGGACTGTGATTAAGCCTTTTGTTGATTATTTGGTATCCTTAGGTTTGCCGAAAAAGATTTTGGCTAGGATGTTGGAGAAGCGTGCATATTTACTTGGTTATGATCTTGAGGAGACTGTTAAGCCTAATGTGGATTGTTTGGTTGCTTTTGGGATCAGGAGGGAAGCACTTGCTTCTATTGTTGCTCAATACCCCCAAATTCTTGGGCAGCCTTTGAAAGCTAAAATGTCTTCACAGCAGTTTTTCTTCAGTATGAAGCTTAAAATTGATCCTGAAGGGTTTGCACGGGTGATAGAGAAGATGCCGCAGATAGTCAGCCTTCATCAACATGTGATAATGAAGCCTGTTGAGTTCCTTCTTGGACGGGGGATACCTTCAGAAGATGTAGCTAAGATGGTCGTAAAGTGTCCCCAATTAGTGGCACTGCGTGTTGAGCTCATGAAGAACAGTTATTACTTTTTTAAGAGTGAAATGGGGAGACCAGTGAAAGAGCTTGTGGAATTTCCGGAATACTTTACATATAGTTTGGAATCCAGGATCAAACCTAGATACCAGAGGTTGCAAAGCAAGGGGATTAGGTGTTCTTTGAAATGGTTCCTCAACTGCAGCGATCAGAGATTTGAGGAGAGGTTGCAAGGGGAGTACATTGAAACAGAGATTTCTGGTCCATCATTTTGTATGGGAGGAAAGTTAGAGCTACCTGGGGTTGGAAATGAGATGGTGTCAGATGGGGAAGACGAGAGTGATGATGAAATACTTTACAGACGCACTGAAGCAGAAGACATTAGGGATCTTGGTGTTGAAGCAAGGGAATCAGCAGCAGTTCATGAGGTTGCGATGCTTTTGCCTCTTTCCGAACTACTTCAGTGTATAGCTTCCATCATGGCCAATTACAGTAGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

541

Amino Acids

61.19

Weight (kDa)

6.05

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 139 - 447 4.7e-113 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014188)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1135
AccIII TCCGGA 1 cut(s) 1222
AciI CCGC 2 cut(s) 199, 1022
AclWI GGATC 4 cut(s) 878, 980, 1262, 1515
AcoI YGGCCR 2 cut(s) 3, 1602
AcsI RAATTY 3 cut(s) 461, 915, 1217
AcuI CTGAAG 5 cut(s) 949, 1011, 1077, 1509, 1565
AdeI CACNNNGTG 1 cut(s) 1145
AfaI GTAC 3 cut(s) 368, 625, 1361
AfiI CCNNNNNNNGG 3 cut(s) 109, 1135, 1424
AflIII ACRYGT 1 cut(s) 1045
AgsI TTSAA 8 cut(s) 135, 244, 302, 443, 934, 1306, 1367, 1520
AjnI CCWGG 2 cut(s) 1250, 1417
AjuI GAANNNNNNNTTGG 2 cut(s) 761, 793
AloI GAACNNNNNNTCC 2 cut(s) 1282, 1314
Alw21I GWGCWC 1 cut(s) 1155
Alw26I GTCTC 3 cut(s) 220, 824, 1189
AlwI GGATC 4 cut(s) 878, 980, 1262, 1515
Ama87I CYCGRG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 1222
AoxI GGCC 3 cut(s) 3, 196, 1602
ApeKI GCWGC 3 cut(s) 925, 1323, 1535
ApoI RAATTY 3 cut(s) 461, 915, 1217
ArsI GACNNNNNNTTYG 1 cut(s) 32
AseI ATTAAT 1 cut(s) 360
Asp700I GAANNNNTTC 2 cut(s) 1310, 1578
AspA2I CCTAGG 1 cut(s) 662
AspS9I GGNCC 3 cut(s) 190, 674, 1382
AsuHPI GGTGA 4 cut(s) 39, 470, 676, 1018
AvaI CYCGRG 1 cut(s) 155
AvaII GGWCC 3 cut(s) 190, 674, 1382
AvrII CCTAGG 1 cut(s) 662
AxyI CCTNAGG 1 cut(s) 757
BaeGI GKGCMC 1 cut(s) 82
BaeI ACNNNNGTAYC 2 cut(s) 398, 431
BalI TGGCCA 2 cut(s) 5, 1604
BanII GRGCYC 2 cut(s) 543, 1155
BbsI GAAGAC 3 cut(s) 939, 1458, 1503
Bbv12I GWGCWC 1 cut(s) 1155
BbvI GCAGC 3 cut(s) 937, 1335, 1547
BccI CCATC 5 cut(s) 1105, 1393, 1429, 1439, 1604
BcgI CGANNNNNNTGC 2 cut(s) 1543, 1577
BciT130I CCWGG 2 cut(s) 1252, 1419
BciVI GTATCC 4 cut(s) 594, 702, 763, 1080
BcoDI GTCTC 3 cut(s) 220, 824, 1189
BfaI CTAG 8 cut(s) 219, 338, 455, 495, 663, 783, 1263, 1621
BfmI CTRYAG 2 cut(s) 329, 1321
BfuI GTATCC 4 cut(s) 594, 702, 763, 1080
BisI GCNGC 5 cut(s) 199, 926, 1022, 1324, 1536
BlnI CCTAGG 1 cut(s) 662
BlsI GCNGC 5 cut(s) 200, 927, 1023, 1325, 1537
BmcAI AGTACT 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 1252, 1419
Bme18I GGWCC 3 cut(s) 190, 674, 1382
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 190, 674, 1382
BmiI GGNNCC 2 cut(s) 676, 1313
BmrFI CCNGG 2 cut(s) 1252, 1419
BmrI ACTGGG 1 cut(s) 682
BmsI GCATC 4 cut(s) 366, 374, 1008, 1545
BmuI ACTGGG 1 cut(s) 682
BpiI GAAGAC 3 cut(s) 939, 1458, 1503
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpuEI CTTGAG 2 cut(s) 629, 845
BsaI GGTCTC 1 cut(s) 1189
BsaJI CCNNGG 4 cut(s) 193, 662, 678, 1418
BsaWI WCCGGW 1 cut(s) 1222
Bsc4I CCNNNNNNNGG 3 cut(s) 109, 1135, 1424
Bse1I ACTGG 3 cut(s) 518, 688, 1199
Bse21I CCTNAGG 1 cut(s) 757
BseAI TCCGGA 1 cut(s) 1222
BseBI CCWGG 2 cut(s) 1252, 1419
BseDI CCNNGG 4 cut(s) 193, 662, 678, 1418
BseGI GGATG 2 cut(s) 389, 792
BseLI CCNNNNNNNGG 3 cut(s) 109, 1135, 1424
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 518, 688, 1199
BseRI GAGGAG 2 cut(s) 842, 1355
BseSI GKGCMC 1 cut(s) 82
BseXI GCAGC 3 cut(s) 937, 1335, 1547
BshFI GGCC 3 cut(s) 5, 198, 1604
BsiHKAI GWGCWC 1 cut(s) 1155
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 1223
BslFI GGGAC 4 cut(s) 628, 660, 733, 1110
BslI CCNNNNNNNGG 3 cut(s) 109, 1135, 1424
BsmAI GTCTC 3 cut(s) 220, 824, 1189
BsmFI GGGAC 4 cut(s) 628, 660, 733, 1110
BsnI GGCC 3 cut(s) 5, 198, 1604
Bso31I GGTCTC 1 cut(s) 1189
BsoBI CYCGRG 1 cut(s) 155
Bsp1286I GDGCHC 3 cut(s) 82, 543, 1155
Bsp13I TCCGGA 1 cut(s) 1222
Bsp143I GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
Bsp19I CCATGG 1 cut(s) 678
BspACI CCGC 2 cut(s) 199, 1022
BspANI GGCC 3 cut(s) 5, 198, 1604
BspCNI CTCAG 1 cut(s) 185
BspEI TCCGGA 1 cut(s) 1222
BspHI TCATGA 3 cut(s) 306, 1155, 1543
BspLI GGNNCC 2 cut(s) 676, 1313
BspMAI CTGCAG 1 cut(s) 1325
BspPI GGATC 4 cut(s) 878, 980, 1262, 1515
BspTNI GGTCTC 1 cut(s) 1189
BsrI ACTGG 3 cut(s) 518, 688, 1199
BssECI CCNNGG 4 cut(s) 193, 662, 678, 1418
BssMI GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
BssT1I CCWWGG 3 cut(s) 193, 662, 678
Bst2UI CCWGG 2 cut(s) 1252, 1419
Bst4CI ACNGT 5 cut(s) 298, 724, 835, 1166, 1613
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 801
BstDEI CTNAG 4 cut(s) 147, 172, 757, 1107
BstDSI CCRYGG 1 cut(s) 678
BstEII GGTNACC 1 cut(s) 682
BstF5I GGATG 2 cut(s) 389, 792
BstKTI GATC 6 cut(s) 823, 873, 988, 1257, 1330, 1510
BstMAI GTCTC 3 cut(s) 220, 824, 1189
BstMBI GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
BstMWI GCNNNNNNNGC 1 cut(s) 1150
BstNI CCWGG 2 cut(s) 1252, 1419
BstNSI RCATGY 2 cut(s) 494, 1049
BstPI GGTNACC 1 cut(s) 682
BstSCI CCNGG 2 cut(s) 1250, 1417
BstSFI CTRYAG 2 cut(s) 329, 1321
BstSLI GKGCMC 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 937, 1335, 1547
BstV2I GAAGAC 3 cut(s) 939, 1458, 1503
BstX2I RGATCY 1 cut(s) 1507
BstXI CCANNNNNNTGG 1 cut(s) 920
BstYI RGATCY 1 cut(s) 1507
Bsu36I CCTNAGG 1 cut(s) 757
BsuI GTATCC 4 cut(s) 594, 702, 763, 1080
BsuRI GGCC 3 cut(s) 5, 198, 1604
BtgI CCRYGG 1 cut(s) 678
BtgZI GCGATG 1 cut(s) 1568
BtsCI GGATG 2 cut(s) 389, 792
BtsI GCAGTG 2 cut(s) 394, 1139
BtsIMutI CAGTG 6 cut(s) 394, 525, 1139, 1206, 1485, 1589
Cac8I GCNNGC 1 cut(s) 801
CciI TCATGA 3 cut(s) 306, 1155, 1543
Cfr13I GGNCC 3 cut(s) 190, 674, 1382
CseI GACGC 1 cut(s) 1491
Csp6I GTAC 3 cut(s) 367, 624, 1360
CviQI GTAC 3 cut(s) 367, 624, 1360
DdeI CTNAG 4 cut(s) 147, 172, 757, 1107
DpnI GATC 6 cut(s) 822, 872, 987, 1256, 1329, 1509
DpnII GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
DraIII CACNNNGTG 1 cut(s) 1145
EaeI YGGCCR 2 cut(s) 3, 1602
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Ecl136II GAGCTC 1 cut(s) 1153
Eco130I CCWWGG 3 cut(s) 193, 662, 678
Eco24I GRGCYC 2 cut(s) 543, 1155
Eco31I GGTCTC 1 cut(s) 1189
Eco47I GGWCC 3 cut(s) 190, 674, 1382
Eco53kI GAGCTC 1 cut(s) 1153
Eco57I CTGAAG 5 cut(s) 949, 1011, 1077, 1509, 1565
Eco81I CCTNAGG 1 cut(s) 757
Eco88I CYCGRG 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 682
EcoICRI GAGCTC 1 cut(s) 1153
EcoO109I RGGNCCY 1 cut(s) 674
EcoO65I GGTNACC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 1250, 1417
EcoT14I CCWWGG 3 cut(s) 193, 662, 678
EcoT38I GRGCYC 2 cut(s) 543, 1155
ErhI CCWWGG 3 cut(s) 193, 662, 678
FalI AAGNNNNNCTT 2 cut(s) 195, 227
FaqI GGGAC 4 cut(s) 628, 660, 733, 1110
Fnu4HI GCNGC 5 cut(s) 199, 926, 1022, 1324, 1536
FokI GGATG 2 cut(s) 396, 799
FriOI GRGCYC 2 cut(s) 543, 1155
Fsp4HI GCNGC 5 cut(s) 199, 926, 1022, 1324, 1536
FspBI CTAG 8 cut(s) 219, 338, 455, 495, 663, 783, 1263, 1621
GluI GCNGC 5 cut(s) 199, 926, 1022, 1324, 1536
HaeIII GGCC 3 cut(s) 5, 198, 1604
HapII CCGG 1 cut(s) 1223
HgaI GACGC 1 cut(s) 1491
HindIII AAGCTT 3 cut(s) 209, 605, 974
HinfI GANTC 4 cut(s) 222, 439, 1247, 1529
HpaII CCGG 1 cut(s) 1223
HphI GGTGA 4 cut(s) 39, 470, 676, 1018
Hpy188I TCNGA 6 cut(s) 383, 599, 1096, 1332, 1444, 1573
HpyAV CCTTC 5 cut(s) 542, 986, 1046, 1082, 1101
HpyCH4III ACNGT 5 cut(s) 298, 724, 835, 1166, 1613
HpyCH4V TGCA 7 cut(s) 387, 577, 803, 1001, 1279, 1323, 1351
HpyF10VI GCNNNNNNNGC 1 cut(s) 1150
HpyF3I CTNAG 4 cut(s) 147, 172, 757, 1107
Kpn2I TCCGGA 1 cut(s) 1222
Kzo9I GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
LmnI GCTCC 1 cut(s) 283
Lsp1109I GCAGC 3 cut(s) 937, 1335, 1547
LweI GCATC 4 cut(s) 366, 374, 1008, 1545
MaeI CTAG 8 cut(s) 219, 338, 455, 495, 663, 783, 1263, 1621
MaeIII GTNAC 6 cut(s) 125, 175, 233, 486, 655, 682
MalI GATC 6 cut(s) 822, 872, 987, 1256, 1329, 1509
MboI GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
MboII GAAGA 8 cut(s) 256, 939, 955, 1027, 1109, 1171, 1463, 1508
MflI RGATCY 1 cut(s) 1507
MhlI GDGCHC 3 cut(s) 82, 543, 1155
MlsI TGGCCA 2 cut(s) 5, 1604
MluCI AATT 9 cut(s) 269, 432, 461, 472, 915, 981, 1130, 1217, 1606
MluNI TGGCCA 2 cut(s) 5, 1604
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 3 cut(s) 537, 771, 1405
Mox20I TGGCCA 2 cut(s) 5, 1604
MroI TCCGGA 1 cut(s) 1222
MroXI GAANNNNTTC 2 cut(s) 1310, 1578
MscI TGGCCA 2 cut(s) 5, 1604
MseI TTAA 6 cut(s) 360, 468, 729, 837, 978, 1179
MslI CAYNNNNRTG 2 cut(s) 495, 1044
Msp20I TGGCCA 2 cut(s) 5, 1604
MspI CCGG 1 cut(s) 1223
MspR9I CCNGG 2 cut(s) 1252, 1419
MvaI CCWGG 2 cut(s) 1252, 1419
MwoI GCNNNNNNNGC 1 cut(s) 1150
NcoI CCATGG 1 cut(s) 678
NdeII GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
NlaIV GGNNCC 2 cut(s) 676, 1313
NmuCI GTSAC 4 cut(s) 125, 175, 233, 682
NspI RCATGY 2 cut(s) 494, 1049
PagI TCATGA 3 cut(s) 306, 1155, 1543
PciI ACATGT 1 cut(s) 1045
PdmI GAANNNNTTC 2 cut(s) 1310, 1578
PfeI GAWTC 3 cut(s) 439, 1247, 1529
PflMI CCANNNNNTGG 1 cut(s) 1135
PfoI TCCNGGA 1 cut(s) 1250
PkrI GCNGC 5 cut(s) 200, 927, 1023, 1325, 1537
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 674
PscI ACATGT 1 cut(s) 1045
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 1155
Psp5II RGGWCCY 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 1250, 1417
PspEI GGTNACC 1 cut(s) 682
PspGI CCWGG 2 cut(s) 1250, 1417
PspN4I GGNNCC 2 cut(s) 676, 1313
PspPI GGNCC 3 cut(s) 190, 674, 1382
PspPPI RGGWCCY 1 cut(s) 674
PsrI GAACNNNNNNTAC 2 cut(s) 1154, 1186
PstI CTGCAG 1 cut(s) 1325
PsuI RGATCY 1 cut(s) 1507
RsaI GTAC 3 cut(s) 368, 625, 1361
RsaNI GTAC 3 cut(s) 367, 624, 1360
RseI CAYNNNNRTG 2 cut(s) 495, 1044
SacI GAGCTC 1 cut(s) 1155
SaqAI TTAA 6 cut(s) 360, 468, 729, 837, 978, 1179
SatI GCNGC 5 cut(s) 199, 926, 1022, 1324, 1536
Sau3AI GATC 6 cut(s) 820, 870, 985, 1254, 1327, 1507
Sau96I GGNCC 3 cut(s) 190, 674, 1382
ScaI AGTACT 1 cut(s) 625
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 1252, 1419
SduI GDGCHC 3 cut(s) 82, 543, 1155
SfaNI GCATC 4 cut(s) 366, 374, 1008, 1545
SfcI CTRYAG 2 cut(s) 329, 1321
SinI GGWCC 3 cut(s) 190, 674, 1382
SmiMI CAYNNNNRTG 2 cut(s) 495, 1044
SmlI CTYRAG 2 cut(s) 608, 824
SmoI CTYRAG 2 cut(s) 608, 824
Sse9I AATT 9 cut(s) 269, 432, 461, 472, 915, 981, 1130, 1217, 1606
SsiI CCGC 2 cut(s) 199, 1022
SspMI CTAG 8 cut(s) 219, 338, 455, 495, 663, 783, 1263, 1621
SstI GAGCTC 1 cut(s) 1155
StyD4I CCNGG 2 cut(s) 1250, 1417
StyI CCWWGG 3 cut(s) 193, 662, 678
TaaI ACNGT 5 cut(s) 298, 724, 835, 1166, 1613
TaqI TCGA 3 cut(s) 347, 449, 543
TasI AATT 9 cut(s) 269, 432, 461, 472, 915, 981, 1130, 1217, 1606
TatI WGTACW 2 cut(s) 623, 1359
TauI GCSGC 2 cut(s) 201, 1024
TfiI GAWTC 3 cut(s) 439, 1247, 1529
Tru1I TTAA 6 cut(s) 360, 468, 729, 837, 978, 1179
Tru9I TTAA 6 cut(s) 360, 468, 729, 837, 978, 1179
TscAI CASTG 6 cut(s) 394, 525, 1146, 1206, 1492, 1589
TseFI GTSAC 4 cut(s) 125, 175, 233, 682
TseI GCWGC 3 cut(s) 925, 1323, 1535
Tsp45I GTSAC 4 cut(s) 125, 175, 233, 682
TspDTI ATGAA 8 cut(s) 177, 282, 986, 1028, 1070, 1172, 1482, 1532
TspRI CASTG 6 cut(s) 394, 525, 1146, 1206, 1492, 1589
Van91I CCANNNNNTGG 1 cut(s) 1135
VpaK11BI GGWCC 3 cut(s) 190, 674, 1382
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 3 cut(s) 461, 915, 1217
XbaI TCTAGA 1 cut(s) 218
XceI RCATGY 2 cut(s) 494, 1049
XmaJI CCTAGG 1 cut(s) 662
XmnI GAANNNNTTC 2 cut(s) 1310, 1578
XspI CTAG 8 cut(s) 219, 338, 455, 495, 663, 783, 1263, 1621
ZrmI AGTACT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.