Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010726

Physical Location & Seq

Genomic Coordinates Reverse (-)

18230865 .. 18232630

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCATTCTGCTGTGTACAAGGTTGGTCTTCATTATCTTTCTTGGGATATTTCTGGTGGCAATGCCAGATGTATTGCGATGCTCCAAGCATTCCAAGAGGTTGTTAAAGATTACTCGACGCCGCCTGAGAATACCCTTAATAGAGACATGACTGCTCAAATAAGTAGCTACGTCTCTTTCCTCATAGAATGCCGTCCGCTTTCGATTAGCATGGGAAACGCAATCCGATTTGTGAAAAACAGGATTGCAAAGCTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTTCTCTTCACTCAGATATTGAACGTTTCATTAACGAGAAAATCATAGGTGCAGATACAGTGATAGTCGAACATGCTGTCACTAAAATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTTCCACTGTCATTGAGATGATATTAGTGCATGCACATGAACTCGGGAAAAAGTTTCGTGTCTTTGTGGTGGATTCTCGACCAAAGCTTCAAGGGAAGCTACTGCTTCGTAGATTGATCAAACGAGGCATTAACTGTACATACACTCATATAACTGCCATATCATATATCATGCACCAAGTCACCAAAGTGTTTTTGGGCGCCTCATCAGTTTTTTCTAACGGAACAGTTTACTCAAGGGTTGGCACTGCTTGTGTTGCAATGGTGGCTAATGCTTTCCGTGTTCCTGTGCTTGTTTGTTGCGAAGCCTATAAGTTCCATGAGAAGGTGCAGTTGGATTATTCAATATGCTCCAATGAGCTCGGTGATCCAAATGCTATTTCAAAAGTTCATGGAAGAGAAGACATAAACTACTTAAATGGCTTGACCAACAATGCAAAGCTGAAGTTTCTGAACTTGATGTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGTGTGCCTGTCATCGTAAGAGAATATCAGAAAGAACACTTGCTTCAAAGCTCAAAGATTGTTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

333

Amino Acids

37.2

Weight (kDa)

8.83

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IF-2B	PF01008	17 - 310	1.6e-82	Initiation factor 2 subunit family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44070 AT5G38640
fragaria_vesca	FvH4_6g45430
malus_domestica	MD09G1083100.v1.1 MD17G1073400.v1.1
prunus_persica	Prupe.3G240400_v2.0.a1 Prupe.3G240400_v2.0.a1
pyrus_communis	pycom17g07430
rosa_chinensis	RchiOBHm_Chr2g0163261
rosa_laevigata	RLG00000021386
rosa_multiflora	Rmu_sc0002045.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087430
rosa_rugosa	Rorug02G0501700 Rorug02G0501800 Rorug02G0501900
rosa_samantha	Rh2AG568600 Rh2BG580700 Rh2CG550300 Rh2DG590600
rosa_wichuraiana	Rw2G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
Acc65I	GGTACC	1 cut(s)	922
AccB1I	GGYRCC	2 cut(s)	605, 922
AciI	CCGC	2 cut(s)	122, 197
AclI	AACGTT	1 cut(s)	310
AclWI	GGATC	2 cut(s)	412, 767
AcuI	CTGAAG	3 cut(s)	297, 867, 869
AcyI	GRCGYC	2 cut(s)	119, 606
AfaI	GTAC	3 cut(s)	17, 544, 924
AfiI	CCNNNNNNNGG	1 cut(s)	730
AgsI	TTSAA	5 cut(s)	308, 497, 750, 789, 980
AjuI	GAANNNNNNNTTGG	4 cut(s)	722, 754, 769, 801
AleI	CACNNNNGTG	2 cut(s)	593, 935
AluBI	AGCT	8 cut(s)	168, 253, 287, 493, 505, 766, 847, 984
AluI	AGCT	8 cut(s)	168, 253, 287, 493, 505, 766, 847, 984
Alw21I	GWGCWC	1 cut(s)	768
Alw26I	GTCTC	3 cut(s)	138, 178, 372
AlwI	GGATC	2 cut(s)	412, 767
Ama87I	CYCGRG	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	253
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
Asp718I	GGTACC	1 cut(s)	922
AspLEI	GCGC	1 cut(s)	608
AsuHPI	GGTGA	3 cut(s)	395, 580, 782
AvaI	CYCGRG	1 cut(s)	449
BanI	GGYRCC	2 cut(s)	605, 922
BanII	GRGCYC	1 cut(s)	768
BbsI	GAAGAC	2 cut(s)	20, 813
Bbv12I	GWGCWC	1 cut(s)	768
BbvI	GCAGC	1 cut(s)	240
BceAI	ACGGC	1 cut(s)	177
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	3 cut(s)	138, 178, 372
BfoI	RGCGCY	1 cut(s)	609
BisI	GCNGC	2 cut(s)	122, 254
BlsI	GCNGC	2 cut(s)	123, 255
BmeT110I	CYCGRG	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	607, 924
BmsI	GCATC	2 cut(s)	69, 862
BpiI	GAAGAC	2 cut(s)	20, 813
BpuEI	CTTGAG	1 cut(s)	625
BsaHI	GRCGYC	2 cut(s)	119, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	730
Bse3DI	GCAATG	2 cut(s)	67, 672
BseLI	CCNNNNNNNGG	1 cut(s)	730
BseMI	GCAATG	2 cut(s)	67, 672
BseMII	CTCAG	2 cut(s)	117, 312
BseXI	GCAGC	1 cut(s)	240
BsgI	GTGCAG	2 cut(s)	357, 755
BshNI	GGYRCC	2 cut(s)	605, 922
BsiHKAI	GWGCWC	1 cut(s)	768
BsiHKCI	CYCGRG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	730
BsmAI	GTCTC	3 cut(s)	138, 178, 372
BsmBI	CGTCTC	2 cut(s)	178, 372
BsmI	GAATGC	3 cut(s)	4, 89, 194
BsoBI	CYCGRG	1 cut(s)	449
Bsp1286I	GDGCHC	1 cut(s)	768
Bsp1407I	TGTACA	2 cut(s)	15, 542
Bsp143I	GATC	3 cut(s)	404, 522, 772
BspACI	CCGC	2 cut(s)	122, 197
BspCNI	CTCAG	2 cut(s)	118, 311
BspLI	GGNNCC	2 cut(s)	607, 924
BspPI	GGATC	2 cut(s)	412, 767
BspT107I	GGYRCC	2 cut(s)	605, 922
BsrDI	GCAATG	2 cut(s)	67, 672
BsrGI	TGTACA	2 cut(s)	15, 542
BssMI	GATC	3 cut(s)	404, 522, 772
BssNI	GRCGYC	2 cut(s)	119, 606
Bst4CI	ACNGT	5 cut(s)	346, 383, 415, 542, 634
Bst6I	CTCTTC	2 cut(s)	297, 796
BstACI	GRCGYC	2 cut(s)	119, 606
BstAUI	TGTACA	2 cut(s)	15, 542
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	2 cut(s)	126, 298
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	1 cut(s)	608
BstKTI	GATC	3 cut(s)	407, 525, 775
BstMAI	GTCTC	3 cut(s)	138, 178, 372
BstMBI	GATC	3 cut(s)	404, 522, 772
BstMWI	GCNNNNNNNGC	2 cut(s)	662, 671
BstNSI	RCATGY	2 cut(s)	362, 440
BstV1I	GCAGC	1 cut(s)	240
BstV2I	GAAGAC	2 cut(s)	20, 813
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BtgZI	GCGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	351, 411, 651
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	608
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	16, 543, 923
CspCI	CAANNNNNGTGG	2 cut(s)	400, 435
CviQI	GTAC	3 cut(s)	16, 543, 923
DdeI	CTNAG	2 cut(s)	126, 298
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	3 cut(s)	406, 524, 774
DpnII	GATC	3 cut(s)	404, 522, 772
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	2 cut(s)	297, 796
EarI	CTCTTC	2 cut(s)	297, 796
Ecl136II	GAGCTC	1 cut(s)	766
Eco24I	GRGCYC	1 cut(s)	768
Eco53kI	GAGCTC	1 cut(s)	766
Eco57I	CTGAAG	3 cut(s)	297, 867, 869
Eco88I	CYCGRG	1 cut(s)	449
EcoICRI	GAGCTC	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	768
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
Esp3I	CGTCTC	2 cut(s)	178, 372
FalI	AAGNNNNNCTT	2 cut(s)	276, 308
FbaI	TGATCA	1 cut(s)	522
Fnu4HI	GCNGC	2 cut(s)	122, 254
FriOI	GRGCYC	1 cut(s)	768
Fsp4HI	GCNGC	2 cut(s)	122, 254
GlaI	GCGC	1 cut(s)	607
GluI	GCNGC	2 cut(s)	122, 254
HaeII	RGCGCY	1 cut(s)	609
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	608
Hin1I	GRCGYC	2 cut(s)	119, 606
Hin6I	GCGC	1 cut(s)	606
HinP1I	GCGC	1 cut(s)	606
HindIII	AAGCTT	2 cut(s)	285, 491
HinfI	GANTC	2 cut(s)	272, 479
HphI	GGTGA	3 cut(s)	395, 580, 782
Hpy166II	GTNNAC	2 cut(s)	16, 637
Hpy188I	TCNGA	8 cut(s)	227, 271, 277, 301, 396, 858, 886, 963
Hpy188III	TCNNGA	2 cut(s)	451, 483
Hpy8I	GTNNAC	2 cut(s)	16, 637
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	3 cut(s)	401, 724, 891
HpyCH4III	ACNGT	5 cut(s)	346, 383, 415, 542, 634
HpyCH4IV	ACGT	2 cut(s)	171, 310
HpyCH4V	TGCA	9 cut(s)	4, 248, 338, 436, 440, 580, 665, 736, 842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	662, 671
HpyF3I	CTNAG	2 cut(s)	126, 298
HpySE526I	ACGT	2 cut(s)	171, 310
Hsp92I	GRCGYC	2 cut(s)	119, 606
HspAI	GCGC	1 cut(s)	606
KasI	GGCGCC	1 cut(s)	605
KpnI	GGTACC	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	3 cut(s)	404, 522, 772
LmnI	GCTCC	2 cut(s)	87, 761
LpnPI	CCDG	6 cut(s)	39, 79, 138, 226, 705, 954
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	2 cut(s)	69, 862
MaeII	ACGT	2 cut(s)	171, 310
MaeIII	GTNAC	2 cut(s)	364, 586
MalI	GATC	3 cut(s)	406, 524, 774
MboI	GATC	3 cut(s)	404, 522, 772
MboII	GAAGA	5 cut(s)	20, 284, 399, 813, 818
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	768
Mly113I	GGCGCC	1 cut(s)	606
MmeI	TCCRAC	1 cut(s)	720
MnlI	CCTC	5 cut(s)	91, 191, 524, 619, 936
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	5 cut(s)	105, 138, 318, 537, 821
MslI	CAYNNNNRTG	5 cut(s)	422, 441, 593, 896, 935
Mva1269I	GAATGC	3 cut(s)	4, 89, 194
MwoI	GCNNNNNNNGC	2 cut(s)	662, 671
NarI	GGCGCC	1 cut(s)	606
NdeII	GATC	3 cut(s)	404, 522, 772
NlaIV	GGNNCC	2 cut(s)	607, 924
NmuCI	GTSAC	2 cut(s)	364, 586
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	362, 440
OliI	CACNNNNGTG	2 cut(s)	593, 935
PaeI	GCATGC	1 cut(s)	440
PctI	GAATGC	3 cut(s)	4, 89, 194
PfeI	GAWTC	2 cut(s)	272, 479
PkrI	GCNGC	2 cut(s)	123, 255
PluTI	GGCGCC	1 cut(s)	609
Psp124BI	GAGCTC	1 cut(s)	768
Psp1406I	AACGTT	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	607, 924
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	3 cut(s)	17, 544, 924
RsaNI	GTAC	3 cut(s)	16, 543, 923
RseI	CAYNNNNRTG	5 cut(s)	422, 441, 593, 896, 935
SacI	GAGCTC	1 cut(s)	768
SaqAI	TTAA	5 cut(s)	105, 138, 318, 537, 821
SatI	GCNGC	2 cut(s)	122, 254
Sau3AI	GATC	3 cut(s)	404, 522, 772
SduI	GDGCHC	1 cut(s)	768
SfaNI	GCATC	2 cut(s)	69, 862
SfoI	GGCGCC	1 cut(s)	607
SmiMI	CAYNNNNRTG	5 cut(s)	422, 441, 593, 896, 935
SmlI	CTYRAG	1 cut(s)	640
SmoI	CTYRAG	1 cut(s)	640
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	2 cut(s)	122, 197
SspDI	GGCGCC	1 cut(s)	605
SstI	GAGCTC	1 cut(s)	768
TaaI	ACNGT	5 cut(s)	346, 383, 415, 542, 634
TaiI	ACGT	2 cut(s)	174, 313
TaqI	TCGA	4 cut(s)	116, 203, 354, 484
TatI	WGTACW	2 cut(s)	15, 542
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	272, 479
Tru1I	TTAA	5 cut(s)	105, 138, 318, 537, 821
Tru9I	TTAA	5 cut(s)	105, 138, 318, 537, 821
TscAI	CASTG	3 cut(s)	351, 418, 658
TseFI	GTSAC	2 cut(s)	364, 586
TseI	GCWGC	1 cut(s)	253
Tsp45I	GTSAC	2 cut(s)	364, 586
TspDTI	ATGAA	4 cut(s)	20, 304, 459, 785
TspGWI	ACGGA	3 cut(s)	417, 642, 674
TspRI	CASTG	3 cut(s)	351, 418, 658
XceI	RCATGY	2 cut(s)	362, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.