AT5G38640

Belongs to the eIF-2B alpha beta delta subunits family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
15467679 .. 15470724
3046 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38640.1

Sequence Viewer

Length: 1929 bp
ATGGAGTCTCGTCGGAACCCTCGCGCCGTAGTAGATCCAAAGGTCCGACAAGTCGGTTTCTTCACATCATCTCAACCCGATTCATCAACTCAACAACAACAACCCGACCCGATCGCTGCTACCTCTGCTTCTTCTTCTTCTTCCACCATTTCTCCTTCCGGTAACTCACTCTCCCCCGTCATGATTCCTCCTCCTCGTCTCAATTCCTCTGATACTTTCCCTCTTCGAGTCGCTGTCGCTGGTGCTGCTGCGTCAGCCGTGTCTCCTTCTTCGTTTTCTTACTCAAGTCGCCGTGATTTCCCTGATGGATCAACGACGGCGTCTCCTGGACGCCATTCCAGGGGTAGTTTCGTAAAATCATCTGTTCCTGTTGCTTCTTCGCTGCCTGGTATTGGGATGGATTCTATGGCTGCTGCTAAATCTAGTAGTGTTCCTGCTAGTGGTTTAACCACTGTCTCCGTCGTTACCATGCCTCCTGGACTTTCTGAGAAGGCTAGTGGAATGGAGGTGCAGAGTGACCAGAAGAAGCCATTGAAAGAGAAAACCACTAAAGCTGAGAGACGAGCTATTCAAGAAGCTCAAAGAGCTGCTAAAGCTGCTGCAAAAGCTGATGGTGGGAAGGTGGCACCAGTGTCCTCAGCCTCGGTGGCTTCAACAAGTGTTAAAGCTGCTAAACCAGCGAAGGCTACATCTCAGAAGAATGATGTTGCTGTTGCTACTGGAGCAGCTGAGAAGAAGGGAGGTCCATCTGAAAAAGATAGAAAGAAAGATGCTCCTCATCCCCGCATGCAGTATGATGATGAGAGTAGAGTCGTGAAGGCTAAAAGACGTGCTGTTGTAAAACAGACCGAGGCTAAAAACAGGGTTGAGCTATTTAGGCATTTGCCTCAGTATGAGCATGGCACTCAACTTCCTGATCTCGAGACTAAGTTCTTCCAACTTGACCCTATGCATCCTGCTGTGTACAAGGTTGGTCTTCAATATCTTTCTGGGGATATCTCTGGTGGCAATGCCAGGTGTATTGCGATGCTCCAAGCATTCCAAGAGGTTGTCAAAGATTATTCAACACCGCCTGAGAAGTCTCTTAACAGGGACATGACTGCGAAAATAAGTAGCTACGTCTCCTTCCTCATAGAATGCCGTCCGCTTTCGATTAGCATGGGAAACGCAATACGATTTGTGAAAAACAGGATTGCAAAGCTGCCTATAACACTTTCTGAATCTGAAGCAAAAGCTACTCTTCAGTCAGATATTGAACGGTTCATTAACGAGAAGATCATAGTGGCAGATACGGTGATAGTCAAACATGCTGTTACTAAAATAAGAGACGGTGATGTCCTTCTGACCTACGGATCTCCCACTGCTGTTGAGATGGTAATATTACATGCACATGAACTCAGGAAAAAGTTTCGAGTCTTGGTGGTGGATTCTCGTCCAAAGCTTGAAGGGCAGCTACTGCTTCGTAGATTGATCAAACGAGGCATTAACTGTACATACACTCATATAAATGCCATTTCATATATCATGCATGAAGTCACCAAAGTGTTTTTGGGCGCCTCGTCAGTTTTGTCTAACGGAACAGTTTATTCAAGGGTTGGGACTGCTTGTGTTGCAATGGTTGCAAATGCATTCCGTGTTCCTGTGCTTGTATGTTGCGAAGCCTACAAGTTCCATGAGAGGGTGCAATTGGATTCAATATGTTCCAATGAGCTTGGTGATCCAAATGCTATTTCAGAAGTTCATGGAAGAGAAGACATAAACTATTTAGATGGCTTGACCAACAACGCAAACCTGCAGTTTTTGAACTTGATGTATGATGCTACACCTTCAGATTACATTTCCATGATAATCACAGATTATGGCATGGTACCTCCCACAAGTGTGCCTGTCATCGTGAGAGAATATCAGAAAGAACACTTGCTTGTCTAA

Protein Analysis

642

Amino Acids

69.49

Weight (kDa)

9.43

Isoelectric Point (pI)

46.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IF-2B PF01008 333 - 625 1.3e-80 Initiation factor 2 subunit family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010726)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1334
Acc36I ACCTGC 1 cut(s) 1800
Acc65I GGTACC 1 cut(s) 1867
AccB1I GGYRCC 3 cut(s) 625, 1553, 1867
AccII CGCG 1 cut(s) 24
AciI CCGC 3 cut(s) 784, 1070, 1145
AclWI GGATC 4 cut(s) 29, 316, 1360, 1712
AcuI CTGAAG 3 cut(s) 1226, 1245, 1812
AcyI GRCGYC 3 cut(s) 320, 331, 1554
AfaI GTAC 3 cut(s) 965, 1492, 1869
AfiI CCNNNNNNNGG 4 cut(s) 340, 392, 440, 1678
AjiI CACGTC 1 cut(s) 830
AjnI CCWGG 5 cut(s) 325, 338, 385, 475, 1013
AjuI GAANNNNNNNTTGG 2 cut(s) 1714, 1746
AleI CACNNNNGTG 2 cut(s) 1541, 1880
AlwI GGATC 4 cut(s) 29, 316, 1360, 1712
AlwNI CAGNNNCTG 1 cut(s) 1456
Ama87I CYCGRG 1 cut(s) 920
Asp718I GGTACC 1 cut(s) 1867
AspLEI GCGC 2 cut(s) 26, 1556
AspS9I GGNCC 2 cut(s) 43, 743
AsuHPI GGTGA 4 cut(s) 1306, 1343, 1528, 1727
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 2 cut(s) 43, 743
BanI GGYRCC 3 cut(s) 625, 1553, 1867
BarI GAAGNNNNNNTAC 2 cut(s) 1437, 1469
BbsI GAAGAC 2 cut(s) 968, 1758
BbvCI CCTCAGC 1 cut(s) 637
BccI CCATC 6 cut(s) 299, 391, 605, 754, 1366, 1763
BceAI ACGGC 5 cut(s) 11, 242, 276, 333, 1125
BciT130I CCWGG 5 cut(s) 327, 340, 387, 477, 1015
BclI TGATCA 1 cut(s) 1470
BfaI CTAG 3 cut(s) 423, 438, 495
BfmI CTRYAG 1 cut(s) 1793
BfoI RGCGCY 1 cut(s) 1557
BfuAI ACCTGC 1 cut(s) 1800
BglI GCCNNNNNGGC 1 cut(s) 647
Bme1390I CCNGG 5 cut(s) 327, 340, 387, 477, 1015
Bme18I GGWCC 2 cut(s) 43, 743
BmeT110I CYCGRG 1 cut(s) 920
BmgBI CACGTC 1 cut(s) 830
BmgT120I GGNCC 2 cut(s) 43, 743
BmiI GGNNCC 4 cut(s) 17, 627, 1555, 1869
BmrFI CCNGG 5 cut(s) 327, 340, 387, 477, 1015
BmsI GCATC 4 cut(s) 760, 961, 1017, 1807
BpiI GAAGAC 2 cut(s) 968, 1758
BpmI CTGGAG 1 cut(s) 741
Bpu10I CCTNAGC 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 268
BsaHI GRCGYC 3 cut(s) 320, 331, 1554
BsaJI CCNNGG 3 cut(s) 339, 642, 849
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 8 cut(s) 136, 155, 166, 185, 307, 337, 457, 487
Bsc4I CCNNNNNNNGG 4 cut(s) 340, 392, 440, 1678
Bse1I ACTGG 2 cut(s) 629, 724
Bse3DI GCAATG 2 cut(s) 1015, 1620
BseBI CCWGG 5 cut(s) 327, 340, 387, 477, 1015
BseDI CCNNGG 3 cut(s) 339, 642, 849
BseGI GGATG 3 cut(s) 402, 778, 952
BseLI CCNNNNNNNGG 4 cut(s) 340, 392, 440, 1678
BseMI GCAATG 2 cut(s) 1015, 1620
BseMII CTCAG 8 cut(s) 477, 546, 651, 707, 720, 902, 1065, 1411
BseNI ACTGG 2 cut(s) 629, 724
BseRI GAGGAG 3 cut(s) 180, 183, 765
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 114
BshNI GGYRCC 3 cut(s) 625, 1553, 1867
BsiEI CGRYCG 1 cut(s) 114
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 1 cut(s) 159
BslFI GGGAC 2 cut(s) 1106, 1612
BslI CCNNNNNNNGG 4 cut(s) 340, 392, 440, 1678
BsmBI CGTCTC 5 cut(s) 203, 327, 553, 1126, 1320
BsmFI GGGAC 2 cut(s) 1106, 1612
BsmI GAATGC 3 cut(s) 1037, 1142, 1628
BsoBI CYCGRG 1 cut(s) 920
Bsp1407I TGTACA 2 cut(s) 963, 1490
Bsp143I GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
BspACI CCGC 3 cut(s) 784, 1070, 1145
BspCNI CTCAG 8 cut(s) 478, 547, 650, 706, 721, 901, 1066, 1410
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 180
BspLI GGNNCC 4 cut(s) 17, 627, 1555, 1869
BspMAI CTGCAG 1 cut(s) 1797
BspMI ACCTGC 1 cut(s) 1800
BspPI GGATC 4 cut(s) 29, 316, 1360, 1712
BspT107I GGYRCC 3 cut(s) 625, 1553, 1867
BsrDI GCAATG 2 cut(s) 1015, 1620
BsrGI TGTACA 2 cut(s) 963, 1490
BsrI ACTGG 2 cut(s) 629, 724
BssECI CCNNGG 3 cut(s) 339, 642, 849
BssMI GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
BssNI GRCGYC 3 cut(s) 320, 331, 1554
Bst2UI CCWGG 5 cut(s) 327, 340, 387, 477, 1015
Bst4CI ACNGT 6 cut(s) 454, 1260, 1294, 1331, 1490, 1582
Bst6I CTCTTC 3 cut(s) 228, 1245, 1741
BstACI GRCGYC 3 cut(s) 320, 331, 1554
BstAPI GCANNNNNTGC 2 cut(s) 1456, 1619
BstAUI TGTACA 2 cut(s) 963, 1490
BstC8I GCNNGC 1 cut(s) 788
BstDEI CTNAG 9 cut(s) 486, 555, 637, 693, 729, 888, 927, 1074, 1397
BstF5I GGATG 3 cut(s) 402, 778, 952
BstFNI CGCG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 1557
BstHHI GCGC 2 cut(s) 26, 1556
BstKTI GATC 8 cut(s) 37, 114, 311, 919, 1278, 1355, 1473, 1720
BstMBI GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
BstMCI CGRYCG 1 cut(s) 114
BstNI CCWGG 5 cut(s) 327, 340, 387, 477, 1015
BstNSI RCATGY 3 cut(s) 790, 1310, 1388
BstSCI CCNGG 5 cut(s) 325, 338, 385, 475, 1013
BstSFI CTRYAG 1 cut(s) 1793
BstUI CGCG 1 cut(s) 24
BstV2I GAAGAC 2 cut(s) 968, 1758
BstX2I RGATCY 2 cut(s) 34, 1352
BstYI RGATCY 2 cut(s) 34, 1352
BtgZI GCGATG 1 cut(s) 1040
BtrI CACGTC 1 cut(s) 830
BtsCI GGATG 3 cut(s) 402, 778, 952
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 3 cut(s) 450, 636, 1359
BveI ACCTGC 1 cut(s) 1800
Cac8I GCNNGC 1 cut(s) 788
CaiI CAGNNNCTG 1 cut(s) 1456
CciI TCATGA 1 cut(s) 180
CfoI GCGC 2 cut(s) 26, 1556
Cfr13I GGNCC 2 cut(s) 43, 743
CseI GACGC 3 cut(s) 240, 309, 339
Csp6I GTAC 3 cut(s) 964, 1491, 1868
CspCI CAANNNNNGTGG 2 cut(s) 1348, 1383
CviQI GTAC 3 cut(s) 964, 1491, 1868
DdeI CTNAG 9 cut(s) 486, 555, 637, 693, 729, 888, 927, 1074, 1397
DinI GGCGCC 1 cut(s) 1555
DpnI GATC 8 cut(s) 36, 113, 310, 918, 1277, 1354, 1472, 1719
DpnII GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
DrdI GACNNNNNNGTC 1 cut(s) 1334
DseDI GACNNNNNNGTC 1 cut(s) 1334
Eam1104I CTCTTC 3 cut(s) 228, 1245, 1741
EarI CTCTTC 3 cut(s) 228, 1245, 1741
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 2 cut(s) 43, 743
Eco57I CTGAAG 3 cut(s) 1226, 1245, 1812
Eco88I CYCGRG 1 cut(s) 920
EcoRII CCWGG 5 cut(s) 325, 338, 385, 475, 1013
EcoRV GATATC 1 cut(s) 997
EcoT22I ATGCAT 3 cut(s) 954, 1530, 1630
EgeI GGCGCC 1 cut(s) 1555
EheI GGCGCC 1 cut(s) 1555
Esp3I CGTCTC 5 cut(s) 203, 327, 553, 1126, 1320
FalI AAGNNNNNCTT 2 cut(s) 1224, 1256
FaqI GGGAC 2 cut(s) 1106, 1612
FauI CCCGC 1 cut(s) 791
FbaI TGATCA 1 cut(s) 1470
FokI GGATG 3 cut(s) 409, 765, 939
FspBI CTAG 3 cut(s) 423, 438, 495
GlaI GCGC 2 cut(s) 25, 1555
GsuI CTGGAG 1 cut(s) 741
HaeII RGCGCY 1 cut(s) 1557
HapII CCGG 1 cut(s) 159
HgaI GACGC 3 cut(s) 240, 309, 339
HhaI GCGC 2 cut(s) 26, 1556
Hin1I GRCGYC 3 cut(s) 320, 331, 1554
Hin6I GCGC 2 cut(s) 24, 1554
HinP1I GCGC 2 cut(s) 24, 1554
HindIII AAGCTT 1 cut(s) 1439
HpaII CCGG 1 cut(s) 159
HphI GGTGA 4 cut(s) 1306, 1343, 1528, 1727
Hpy166II GTNNAC 1 cut(s) 964
Hpy188III TCNNGA 8 cut(s) 181, 572, 814, 914, 920, 922, 1399, 1894
Hpy8I GTNNAC 1 cut(s) 964
Hpy99I CGWCG 3 cut(s) 15, 319, 464
HpyCH4III ACNGT 6 cut(s) 454, 1260, 1294, 1331, 1490, 1582
HpyCH4IV ACGT 2 cut(s) 829, 1119
HpyF3I CTNAG 9 cut(s) 486, 555, 637, 693, 729, 888, 927, 1074, 1397
HpySE526I ACGT 2 cut(s) 829, 1119
Hsp92I GRCGYC 3 cut(s) 320, 331, 1554
HspAI GCGC 2 cut(s) 24, 1554
KasI GGCGCC 1 cut(s) 1553
KpnI GGTACC 1 cut(s) 1871
Ksp22I TGATCA 1 cut(s) 1470
Kzo9I GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
LmnI GCTCC 3 cut(s) 722, 778, 1035
LweI GCATC 4 cut(s) 760, 961, 1017, 1807
MaeI CTAG 3 cut(s) 423, 438, 495
MaeII ACGT 2 cut(s) 829, 1119
MaeIII GTNAC 5 cut(s) 161, 463, 515, 1312, 1534
MalI GATC 8 cut(s) 36, 113, 310, 918, 1277, 1354, 1472, 1719
MboI GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
MfeI CAATTG 1 cut(s) 1685
MflI RGATCY 2 cut(s) 34, 1352
MluCI AATT 2 cut(s) 202, 1685
Mly113I GGCGCC 1 cut(s) 1554
MlyI GAGTC 4 cut(s) 14, 237, 819, 1422
MmeI TCCRAC 2 cut(s) 70, 961
Mph1103I ATGCAT 3 cut(s) 954, 1530, 1630
MseI TTAA 5 cut(s) 446, 663, 1086, 1266, 1485
MslI CAYNNNNRTG 5 cut(s) 1389, 1506, 1541, 1841, 1880
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 5 cut(s) 327, 340, 387, 477, 1015
MunI CAATTG 1 cut(s) 1685
Mva1269I GAATGC 3 cut(s) 1037, 1142, 1628
MvaI CCWGG 5 cut(s) 327, 340, 387, 477, 1015
MvnI CGCG 1 cut(s) 24
NarI GGCGCC 1 cut(s) 1554
NdeII GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
NlaIV GGNNCC 4 cut(s) 17, 627, 1555, 1869
NmuCI GTSAC 2 cut(s) 515, 1534
NsiI ATGCAT 3 cut(s) 954, 1530, 1630
NspI RCATGY 3 cut(s) 790, 1310, 1388
OliI CACNNNNGTG 2 cut(s) 1541, 1880
PaeI GCATGC 1 cut(s) 790
PaeR7I CTCGAG 1 cut(s) 920
PagI TCATGA 1 cut(s) 180
PctI GAATGC 3 cut(s) 1037, 1142, 1628
PfeI GAWTC 6 cut(s) 80, 184, 401, 1220, 1427, 1691
PflFI GACNNNGTC 1 cut(s) 319
PfoI TCCNGGA 2 cut(s) 325, 475
Ple19I CGATCG 1 cut(s) 114
PleI GAGTC 4 cut(s) 13, 236, 818, 1421
PluTI GGCGCC 1 cut(s) 1557
PpsI GAGTC 4 cut(s) 13, 236, 818, 1421
Psp6I CCWGG 5 cut(s) 325, 338, 385, 475, 1013
PspGI CCWGG 5 cut(s) 325, 338, 385, 475, 1013
PspN4I GGNNCC 4 cut(s) 17, 627, 1555, 1869
PspPI GGNCC 2 cut(s) 43, 743
PstI CTGCAG 1 cut(s) 1797
PstNI CAGNNNCTG 1 cut(s) 1456
PsuI RGATCY 2 cut(s) 34, 1352
PsyI GACNNNGTC 1 cut(s) 319
PvuI CGATCG 1 cut(s) 114
PvuII CAGCTG 1 cut(s) 728
RsaI GTAC 3 cut(s) 965, 1492, 1869
RsaNI GTAC 3 cut(s) 964, 1491, 1868
RseI CAYNNNNRTG 5 cut(s) 1389, 1506, 1541, 1841, 1880
SaqAI TTAA 5 cut(s) 446, 663, 1086, 1266, 1485
Sau3AI GATC 8 cut(s) 34, 111, 308, 916, 1275, 1352, 1470, 1717
Sau96I GGNCC 2 cut(s) 43, 743
SchI GAGTC 4 cut(s) 14, 237, 819, 1422
ScrFI CCNGG 5 cut(s) 327, 340, 387, 477, 1015
SfaNI GCATC 4 cut(s) 760, 961, 1017, 1807
SfcI CTRYAG 1 cut(s) 1793
SfoI GGCGCC 1 cut(s) 1555
Sfr274I CTCGAG 1 cut(s) 920
SinI GGWCC 2 cut(s) 43, 743
SlaI CTCGAG 1 cut(s) 920
SmiMI CAYNNNNRTG 5 cut(s) 1389, 1506, 1541, 1841, 1880
SmlI CTYRAG 2 cut(s) 283, 920
SmoI CTYRAG 2 cut(s) 283, 920
SphI GCATGC 1 cut(s) 790
Sse9I AATT 2 cut(s) 202, 1685
SsiI CCGC 3 cut(s) 784, 1070, 1145
SspDI GGCGCC 1 cut(s) 1553
SspI AATATT 1 cut(s) 1380
SspMI CTAG 3 cut(s) 423, 438, 495
StyD4I CCNGG 5 cut(s) 325, 338, 385, 475, 1013
TaaI ACNGT 6 cut(s) 454, 1260, 1294, 1331, 1490, 1582
TaiI ACGT 2 cut(s) 832, 1122
TaqI TCGA 4 cut(s) 226, 921, 1151, 1411
TaqII GACCGA 1 cut(s) 863
TasI AATT 2 cut(s) 202, 1685
TatI WGTACW 2 cut(s) 963, 1490
TfiI GAWTC 6 cut(s) 80, 184, 401, 1220, 1427, 1691
Tru1I TTAA 5 cut(s) 446, 663, 1086, 1266, 1485
Tru9I TTAA 5 cut(s) 446, 663, 1086, 1266, 1485
TscAI CASTG 3 cut(s) 457, 636, 1366
TseFI GTSAC 2 cut(s) 515, 1534
Tsp45I GTSAC 2 cut(s) 515, 1534
TspDTI ATGAA 6 cut(s) 72, 1252, 1407, 1506, 1545, 1730
TspGWI ACGGA 4 cut(s) 448, 1365, 1590, 1622
TspRI CASTG 3 cut(s) 457, 636, 1366
Tth111I GACNNNGTC 1 cut(s) 319
VpaK11BI GGWCC 2 cut(s) 43, 743
XceI RCATGY 3 cut(s) 790, 1310, 1388
XcmI CCANNNNNNNNNTGG 1 cut(s) 1546
XhoI CTCGAG 1 cut(s) 920
XspI CTAG 3 cut(s) 423, 438, 495
Zsp2I ATGCAT 3 cut(s) 954, 1530, 1630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.