Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010726

Physical Location & Seq

Genomic Coordinates Forward (+)

63396072 .. 63428453

Gene Structure 32382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0501800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2190 bp

ATGGAGGATTCTGAAGGGAGCGTCTTGAACTCACCGGTTGAAGAAAACTTGGGTGCTAGTGATCACTTGTCGATTCTGAAAGGCTATGGAGCATTTGGGATATTGGGTGCTGTTATTATTGCCCTACTTGTACCTGTGTTGCTGTCAACTGTGTTCCTGGGAAAGAAAAGGAAGCAACGAGGAGTTCCCGTGCAAGTTGGTGGCGAGGAAGGTTATGCAATGCGCAACATTCGTGTTACTGACTTGATTGAAACTCCTCATAAAGAGGCGACAACTGTGCCAGCCTTGTTTGAGCAATCTTGTGAAAAGTACGCACAGAATCAGTTTCTTGGAACCAGGAAGTTGATTGGAAGTGAATTTGTCACAGCTAGCAATGGCAAGAAGTTTGAGAAACTTCACTTAGGAGATTATGAATGGCAAACTTACAGACAAGTCTTTGATCGTGCTTGCAACTTTGCATCTGGCCTTATTAAGTTAGGTCATAATGTGGATACCCGTGCTGCAATTTTTGCTGACACCTGCGCAGAGTGGTTTATAACCTTTCAGGGGTGCTTCCGGCAGAATATTACTGTTGTTACGATCTATTCTTCCCTAGGTGAGGATGCCCTAATCCACTCGCTTAATGAGACTCAAGTATCAACATTGATCTGTGATTCAAAGCAGTTGAAAAAGCTGGCTTCCATAAGCTCAAGGCTAAATAGCATAAAAAATGTAATTTATTTTGAAGACGAGGGAAGTTCAGATGCTAAAGAATTTGAAAGTACTACCAATTGGACAGTCAGATCCATTTCTGAAGTTGAGAAACTTGGACAAGAAAATTCTGTTCATCCACGTTTACCTTCTAAGAATGACATCGCTGTTATCATGTATACGAGCGGCAGTACAGGTCTACCAAAGGGGGTCATGATAACTCACGGCAATATTGTAGCCACTACGGCAGCTGTTACGACACTGATTCCAAGTCTGGGCAGCACTGATGCATACTTAGCATACTTGCCCTTAGCTCATGTTTTTGAATTGGCCGCGGAGTCTGTGATGATGGCTTCAGGTGTTAAAGTTGGTTATGGTTCAGCATTGACTTTAACAGACACTTCAAATAAAATTAAGAAAGGAACCAAGGGAGATGTTTCTATGTTAAAGCCGACTCTCATGACTACAGTTCCTGCTATTATAGATCGTATTCGTGATGCAGTTTTTAAAAAGGTTGAGGAGAGAGGGGGGATAGCGAAGAACCTTTTTGACATTGGATTTAAACGGCGACTGGCTGCTGTTGAAGGAAGCTGGTTTGGTGCTTGGGGTCTGGAAAAATTGTTTTGGGATAATTTTGTCTTTAAAGTTATACGTCTAGGGCTGGGAGGGCGCATTCGCTTTATGATCTGTGGTGGAGCTCCTTTATCTGCTGATTCACAACGATTCATCAATATCTGCATGGGTGCTCCAATCGGGCAAGCATATGGCTTGACAGAAACATTTGCTGGAGCTACGTTTTCTGAGTGGGATGACACAGCAGTGGGCCGTGTTGGCCCACCATTGCCTTGTTGCTACATTAAGCTTGTTTCTTGGAAAGAAGGTGGATACTTGGCATCTGACAAGCCAATGCCTCGTGGGGAGATTGTAATTGGGGGACCCTGTGTAACTGCTGGGTACTTTAAGAATCAAGAAAAGACTGACGAGGTCTACAAGGTTGACGAGAATGGCATGCGCTGGTTTTATACCGGTGACATTGGAATGTTTCATCCTGATGGATGCCTTGAAATTATAGATAGGAAGAAGGATATTGTTAAACTCCAGCATGGAGAGTACATCTCCCTCGGAAAGATTGAGGCAGCATTGATAAGCAGTAATTATGTGGAAAAAATTATGGCATTTGCAGATCCCTACCACAGTTACTGCATAGCTGTAGTTGTCCCTGTGCGTCAAGAACTCGAGAAGTGGGCTCAGGAAGCTGGAATAAATTACAATGATTTTTCAGAGCTGTGTGGAAAAAATGAAGCAGTTAGTGAGGTTCAGCAATCCCTCTACAAGGTGGCGAAAGCAGAAAAATTGGACAAGTATGAAATTCCTAGAAAGATTTATTTGGCACCTGATCCATGGACACCCGAATCCGGATTGGTTACTGCTGCTCTCAAGATCAGGAGGGAACAGATCAAGTCCAAGTTCAAAAGTGAGATCGAGAAGTTGTATGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

729

Amino Acids

80.39

Weight (kDa)

6.64

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	130 - 550	1.2e-86	AMP-binding enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44070 AT5G38640
fragaria_vesca	FvH4_6g45430
malus_domestica	MD09G1083100.v1.1 MD17G1073400.v1.1
prunus_persica	Prupe.3G240400_v2.0.a1 Prupe.3G240400_v2.0.a1
pyrus_communis	pycom17g07430
rosa_chinensis	RchiOBHm_Chr2g0163261
rosa_laevigata	RLG00000021386
rosa_multiflora	Rmu_sc0002045.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087430
rosa_rugosa	Rorug02G0501700 Rorug02G0501800 Rorug02G0501900
rosa_samantha	Rh2AG568600 Rh2BG580700 Rh2CG550300 Rh2DG590600
rosa_wichuraiana	Rw2G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AarI	CACCTGC	1 cut(s)	527
Acc16I	TGCGCA	2 cut(s)	224, 523
Acc36I	ACCTGC	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	2080
AccBSI	CCGCTC	1 cut(s)	876
AccI	GTMKAC	3 cut(s)	869, 889, 1677
AccII	CGCG	1 cut(s)	1025
AccIII	TCCGGA	1 cut(s)	2105
AciI	CCGC	3 cut(s)	876, 1023, 1025
AclWI	GGATC	3 cut(s)	777, 1868, 2081
AcoI	YGGCCR	1 cut(s)	1020
AcsI	RAATTY	4 cut(s)	356, 752, 817, 2058
AcuI	CTGAAG	3 cut(s)	33, 813, 1029
AfaI	GTAC	6 cut(s)	132, 311, 763, 883, 1646, 1802
AfiI	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 2023, 2105
AgeI	ACCGGT	2 cut(s)	34, 1715
AjnI	CCWGG	2 cut(s)	156, 335
AleI	CACNNNNGTG	1 cut(s)	1508
Alw21I	GWGCWC	2 cut(s)	1390, 1438
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	3 cut(s)	777, 1868, 2081
AlwNI	CAGNNNCTG	2 cut(s)	1163, 1890
Ama87I	CYCGRG	1 cut(s)	1925
Aor13HI	TCCGGA	1 cut(s)	2105
AoxI	GGCC	4 cut(s)	463, 1020, 1513, 1522
ApeKI	GCWGC	6 cut(s)	500, 938, 969, 1265, 1826, 2120
ApoI	RAATTY	4 cut(s)	356, 752, 817, 2058
AsiGI	ACCGGT	2 cut(s)	34, 1715
AspA2I	CCTAGG	1 cut(s)	592
AspLEI	GCGC	4 cut(s)	225, 524, 1362, 1704
AspS9I	GGNCC	3 cut(s)	1513, 1523, 1625
AsuHPI	GGTGA	3 cut(s)	24, 608, 1730
AsuNHI	GCTAGC	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	1925
AvaII	GGWCC	1 cut(s)	1625
AvrII	CCTAGG	1 cut(s)	592
BaeI	ACNNNNGTAYC	2 cut(s)	618, 651
BanI	GGYRCC	1 cut(s)	2080
BanII	GRGCYC	2 cut(s)	1390, 1939
BauI	CACGAG	1 cut(s)	1602
BbsI	GAAGAC	1 cut(s)	732
Bbv12I	GWGCWC	2 cut(s)	1390, 1438
BbvI	GCAGC	6 cut(s)	487, 950, 981, 1252, 1838, 2107
BccI	CCATC	2 cut(s)	1033, 1736
BceAI	ACGGC	4 cut(s)	931, 951, 1271, 1500
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	2 cut(s)	158, 337
BciVI	GTATCC	2 cut(s)	484, 1568
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	5 cut(s)	57, 369, 593, 1346, 2064
BfmI	CTRYAG	2 cut(s)	1155, 1899
BfuAI	ACCTGC	1 cut(s)	527
BfuI	GTATCC	2 cut(s)	484, 1568
BglI	GCCNNNNNGGC	2 cut(s)	935, 1521
BisI	GCNGC	8 cut(s)	501, 877, 939, 970, 1023, 1266, 1827, 2121
BlnI	CCTAGG	1 cut(s)	592
BlsI	GCNGC	8 cut(s)	502, 878, 940, 971, 1024, 1267, 1828, 2122
BmcAI	AGTACT	1 cut(s)	763
Bme1390I	CCNGG	2 cut(s)	158, 337
Bme18I	GGWCC	1 cut(s)	1625
BmeT110I	CYCGRG	1 cut(s)	1925
BmgT120I	GGNCC	3 cut(s)	1513, 1523, 1625
BmiI	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 2082
BmrFI	CCNGG	2 cut(s)	158, 337
BmsI	GCATC	7 cut(s)	467, 592, 733, 967, 1177, 1592, 1736
BmtI	GCTAGC	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	732
BplI	GAGNNNNNCTC	2 cut(s)	1790, 1822
BpmI	CTGGAG	2 cut(s)	1497, 1772
Bpu10I	CCTNAGC	2 cut(s)	1000, 1938
BpuEI	CTTGAG	3 cut(s)	615, 673, 2111
BsaJI	CCNNGG	6 cut(s)	157, 592, 1023, 1116, 1810, 2090
BsaWI	WCCGGW	3 cut(s)	34, 1715, 2105
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 2023, 2105
Bse118I	RCCGGY	2 cut(s)	34, 1715
Bse1I	ACTGG	1 cut(s)	1266
Bse3DI	GCAATG	3 cut(s)	225, 379, 1529
BseAI	TCCGGA	1 cut(s)	2105
BseBI	CCWGG	2 cut(s)	158, 337
BseDI	CCNNGG	6 cut(s)	157, 592, 1023, 1116, 1810, 2090
BseGI	GGATG	5 cut(s)	607, 826, 1504, 1735, 1751
BseLI	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 2023, 2105
BseMI	GCAATG	3 cut(s)	225, 379, 1529
BseMII	CTCAG	2 cut(s)	1482, 1952
BseNI	ACTGG	1 cut(s)	1266
BseRI	GAGGAG	3 cut(s)	195, 246, 1223
BseXI	GCAGC	6 cut(s)	487, 950, 981, 1252, 1838, 2107
BseYI	CCCAGC	2 cut(s)	1351, 1640
Bsh1236I	CGCG	1 cut(s)	1025
BshFI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BshNI	GGYRCC	1 cut(s)	2080
BshTI	ACCGGT	2 cut(s)	34, 1715
BsiHKAI	GWGCWC	2 cut(s)	1390, 1438
BsiHKCI	CYCGRG	1 cut(s)	1925
BsiSI	CCGG	4 cut(s)	35, 556, 1716, 2106
BslFI	GGGAC	2 cut(s)	1638, 1892
BslI	CCNNNNNNNGG	5 cut(s)	546, 598, 965, 2023, 2105
BsmAI	GTCTC	1 cut(s)	620
BsmFI	GGGAC	2 cut(s)	1638, 1892
BsmI	GAATGC	1 cut(s)	1362
BsnI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BsoBI	CYCGRG	1 cut(s)	1925
Bsp1286I	GDGCHC	3 cut(s)	1390, 1438, 1939
Bsp13I	TCCGGA	1 cut(s)	2105
Bsp19I	CCATGG	1 cut(s)	2090
BspACI	CCGC	3 cut(s)	876, 1023, 1025
BspANI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BspCNI	CTCAG	2 cut(s)	1483, 1951
BspEI	TCCGGA	1 cut(s)	2105
BspFNI	CGCG	1 cut(s)	1025
BspHI	TCATGA	2 cut(s)	903, 1149
BspLI	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 2082
BspMI	ACCTGC	1 cut(s)	527
BspOI	GCTAGC	1 cut(s)	372
BspPI	GGATC	3 cut(s)	777, 1868, 2081
BspT107I	GGYRCC	1 cut(s)	2080
BsrBI	CCGCTC	1 cut(s)	876
BsrDI	GCAATG	3 cut(s)	225, 379, 1529
BsrFI	RCCGGY	2 cut(s)	34, 1715
BsrI	ACTGG	1 cut(s)	1266
BssAI	RCCGGY	2 cut(s)	34, 1715
BssECI	CCNNGG	6 cut(s)	157, 592, 1023, 1116, 1810, 2090
BssNAI	GTATAC	1 cut(s)	870
BssSI	CACGAG	1 cut(s)	1602
BssT1I	CCWWGG	3 cut(s)	592, 1116, 2090
Bst1107I	GTATAC	1 cut(s)	870
Bst2BI	CACGAG	1 cut(s)	1602
Bst2UI	CCWGG	2 cut(s)	158, 337
Bst4CI	ACNGT	6 cut(s)	151, 277, 571, 778, 1159, 1886
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	6 cut(s)	282, 370, 448, 675, 1449, 1700
BstDEI	CTNAG	6 cut(s)	400, 843, 985, 1000, 1491, 1938
BstDSI	CCRYGG	2 cut(s)	1023, 2090
BstENI	CCTNNNNNAGG	2 cut(s)	596, 2021
BstF5I	GGATG	5 cut(s)	607, 826, 1504, 1735, 1751
BstFNI	CGCG	1 cut(s)	1025
BstHHI	GCGC	4 cut(s)	225, 524, 1362, 1704
BstMAI	GTCTC	1 cut(s)	620
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 935, 986, 1357, 1521, 1943
BstNI	CCWGG	2 cut(s)	158, 337
BstNSI	RCATGY	1 cut(s)	1702
BstSCI	CCNGG	2 cut(s)	156, 335
BstSFI	CTRYAG	2 cut(s)	1155, 1899
BstUI	CGCG	1 cut(s)	1025
BstV1I	GCAGC	6 cut(s)	487, 950, 981, 1252, 1838, 2107
BstV2I	GAAGAC	1 cut(s)	732
BstX2I	RGATCY	2 cut(s)	782, 1873
BstYI	RGATCY	2 cut(s)	782, 1873
BstZ17I	GTATAC	1 cut(s)	870
BsuI	GTATCC	2 cut(s)	484, 1568
BsuRI	GGCC	4 cut(s)	465, 1022, 1515, 1524
BtgI	CCRYGG	2 cut(s)	1023, 2090
BtgZI	GCGATG	1 cut(s)	838
BtsCI	GGATG	5 cut(s)	607, 826, 1504, 1735, 1751
BtsI	GCAGTG	1 cut(s)	1515
BtsIMutI	CAGTG	3 cut(s)	950, 972, 1515
BveI	ACCTGC	1 cut(s)	527
Cac8I	GCNNGC	6 cut(s)	282, 370, 448, 675, 1449, 1700
CaiI	CAGNNNCTG	2 cut(s)	1163, 1890
CciI	TCATGA	2 cut(s)	903, 1149
CfoI	GCGC	4 cut(s)	225, 524, 1362, 1704
Cfr10I	RCCGGY	2 cut(s)	34, 1715
Cfr13I	GGNCC	3 cut(s)	1513, 1523, 1625
Cfr42I	CCGCGG	1 cut(s)	1026
CseI	GACGC	2 cut(s)	10, 1904
Csp6I	GTAC	6 cut(s)	131, 310, 762, 882, 1645, 1801
CspAI	ACCGGT	2 cut(s)	34, 1715
CviAII	CATG	8 cut(s)	865, 904, 1007, 1150, 1429, 1699, 1793, 2091
CviQI	GTAC	6 cut(s)	131, 310, 762, 882, 1645, 1801
DdeI	CTNAG	6 cut(s)	400, 843, 985, 1000, 1491, 1938
DraI	TTTAAA	3 cut(s)	1198, 1252, 1333
EaeI	YGGCCR	1 cut(s)	1020
Ecl136II	GAGCTC	1 cut(s)	1388
Eco130I	CCWWGG	3 cut(s)	592, 1116, 2090
Eco24I	GRGCYC	2 cut(s)	1390, 1939
Eco47I	GGWCC	1 cut(s)	1625
Eco53kI	GAGCTC	1 cut(s)	1388
Eco57I	CTGAAG	3 cut(s)	33, 813, 1029
Eco88I	CYCGRG	1 cut(s)	1925
EcoICRI	GAGCTC	1 cut(s)	1388
EcoNI	CCTNNNNNAGG	2 cut(s)	596, 2021
EcoO109I	RGGNCCY	1 cut(s)	1625
EcoRII	CCWGG	2 cut(s)	156, 335
EcoT14I	CCWWGG	3 cut(s)	592, 1116, 2090
EcoT22I	ATGCAT	1 cut(s)	982
EcoT38I	GRGCYC	2 cut(s)	1390, 1939
ErhI	CCWWGG	3 cut(s)	592, 1116, 2090
FaeI	CATG	8 cut(s)	868, 907, 1010, 1153, 1432, 1702, 1796, 2094
FaqI	GGGAC	2 cut(s)	1638, 1892
FatI	CATG	8 cut(s)	864, 903, 1006, 1149, 1428, 1698, 1792, 2090
FauNDI	CATATG	1 cut(s)	1453
FbaI	TGATCA	1 cut(s)	61
FblI	GTMKAC	3 cut(s)	869, 889, 1677
Fnu4HI	GCNGC	8 cut(s)	501, 877, 939, 970, 1023, 1266, 1827, 2121
FokI	GGATG	5 cut(s)	614, 813, 1511, 1722, 1758
FriOI	GRGCYC	2 cut(s)	1390, 1939
Fsp4HI	GCNGC	8 cut(s)	501, 877, 939, 970, 1023, 1266, 1827, 2121
FspBI	CTAG	5 cut(s)	57, 369, 593, 1346, 2064
FspI	TGCGCA	2 cut(s)	224, 523
GlaI	GCGC	4 cut(s)	224, 523, 1361, 1703
GluI	GCNGC	8 cut(s)	501, 877, 939, 970, 1023, 1266, 1827, 2121
GsaI	CCCAGC	2 cut(s)	1355, 1644
GsuI	CTGGAG	2 cut(s)	1497, 1772
HaeIII	GGCC	4 cut(s)	465, 1022, 1515, 1524
HapII	CCGG	4 cut(s)	35, 556, 1716, 2106
HgaI	GACGC	2 cut(s)	10, 1904
HhaI	GCGC	4 cut(s)	225, 524, 1362, 1704
Hin1II	CATG	8 cut(s)	868, 907, 1010, 1153, 1432, 1702, 1796, 2094
Hin6I	GCGC	4 cut(s)	223, 522, 1360, 1702
HinP1I	GCGC	4 cut(s)	223, 522, 1360, 1702
HincII	GTYRAC	2 cut(s)	147, 1687
HindII	GTYRAC	2 cut(s)	147, 1687
HindIII	AAGCTT	1 cut(s)	1550
HpaII	CCGG	4 cut(s)	35, 556, 1716, 2106
HphI	GGTGA	3 cut(s)	24, 608, 1730
Hpy166II	GTNNAC	6 cut(s)	147, 836, 870, 890, 1678, 1687
Hpy188I	TCNGA	9 cut(s)	13, 78, 742, 782, 793, 1492, 1588, 1814, 1972
Hpy8I	GTNNAC	6 cut(s)	147, 836, 870, 890, 1678, 1687
HpyAV	CCTTC	6 cut(s)	8, 203, 849, 1268, 1562, 1765
HpyCH4III	ACNGT	6 cut(s)	151, 277, 571, 778, 1159, 1886
HpyCH4IV	ACGT	3 cut(s)	832, 1342, 1484
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 935, 986, 1357, 1521, 1943
HpyF3I	CTNAG	6 cut(s)	400, 843, 985, 1000, 1491, 1938
HpySE526I	ACGT	3 cut(s)	832, 1342, 1484
Hsp92II	CATG	8 cut(s)	868, 907, 1010, 1153, 1432, 1702, 1796, 2094
HspAI	GCGC	4 cut(s)	223, 522, 1360, 1702
KflI	GGGWCCC	1 cut(s)	1625
Kpn2I	TCCGGA	1 cut(s)	2105
Ksp22I	TGATCA	1 cut(s)	61
KspI	CCGCGG	1 cut(s)	1026
LmnI	GCTCC	6 cut(s)	18, 89, 1385, 1393, 1441, 1478
Lsp1109I	GCAGC	6 cut(s)	487, 950, 981, 1252, 1838, 2107
LweI	GCATC	7 cut(s)	467, 592, 733, 967, 1177, 1592, 1736
MaeI	CTAG	5 cut(s)	57, 369, 593, 1346, 2064
MaeII	ACGT	3 cut(s)	832, 1342, 1484
MaeIII	GTNAC	8 cut(s)	235, 361, 574, 943, 1633, 1718, 1886, 2113
MbiI	CCGCTC	1 cut(s)	876
MboII	GAAGA	5 cut(s)	53, 579, 737, 1240, 1780
MfeI	CAATTG	1 cut(s)	769
MflI	RGATCY	2 cut(s)	782, 1873
MhlI	GDGCHC	3 cut(s)	1390, 1438, 1939
MlyI	GAGTC	3 cut(s)	622, 1037, 1138
Mph1103I	ATGCAT	1 cut(s)	982
MroI	TCCGGA	1 cut(s)	2105
MslI	CAYNNNNRTG	3 cut(s)	1508, 1727, 1740
MspA1I	CMGCKG	2 cut(s)	941, 1025
MspI	CCGG	4 cut(s)	35, 556, 1716, 2106
MspR9I	CCNGG	2 cut(s)	158, 337
MunI	CAATTG	1 cut(s)	769
Mva1269I	GAATGC	1 cut(s)	1362
MvaI	CCWGG	2 cut(s)	158, 337
MvnI	CGCG	1 cut(s)	1025
MwoI	GCNNNNNNNGC	6 cut(s)	509, 935, 986, 1357, 1521, 1943
NcoI	CCATGG	1 cut(s)	2090
NdeI	CATATG	1 cut(s)	1453
NheI	GCTAGC	1 cut(s)	368
NlaIII	CATG	8 cut(s)	868, 907, 1010, 1153, 1432, 1702, 1796, 2094
NlaIV	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 2082
NmuCI	GTSAC	2 cut(s)	361, 1718
NsbI	TGCGCA	2 cut(s)	224, 523
NsiI	ATGCAT	1 cut(s)	982
NspI	RCATGY	1 cut(s)	1702
OliI	CACNNNNGTG	1 cut(s)	1508
PaeI	GCATGC	1 cut(s)	1702
PaeR7I	CTCGAG	1 cut(s)	1925
PagI	TCATGA	2 cut(s)	903, 1149
PaqCI	CACCTGC	1 cut(s)	527
PctI	GAATGC	1 cut(s)	1362
PfeI	GAWTC	9 cut(s)	8, 73, 319, 653, 955, 1403, 1413, 1654, 2102
PflFI	GACNNNGTC	1 cut(s)	1673
PinAI	ACCGGT	2 cut(s)	34, 1715
PkrI	GCNGC	8 cut(s)	502, 878, 940, 971, 1024, 1267, 1828, 2122
PleI	GAGTC	3 cut(s)	622, 1036, 1138
PpsI	GAGTC	3 cut(s)	622, 1036, 1138
PpuMI	RGGWCCY	1 cut(s)	1625
PsiI	TTATAA	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	1390
Psp5II	RGGWCCY	1 cut(s)	1625
Psp6I	CCWGG	2 cut(s)	156, 335
PspFI	CCCAGC	2 cut(s)	1351, 1640
PspGI	CCWGG	2 cut(s)	156, 335
PspN4I	GGNNCC	5 cut(s)	334, 1114, 1626, 1627, 2082
PspPI	GGNCC	3 cut(s)	1513, 1523, 1625
PspPPI	RGGWCCY	1 cut(s)	1625
PstNI	CAGNNNCTG	2 cut(s)	1163, 1890
PsuI	RGATCY	2 cut(s)	782, 1873
PsyI	GACNNNGTC	1 cut(s)	1673
PvuII	CAGCTG	1 cut(s)	941
RsaI	GTAC	6 cut(s)	132, 311, 763, 883, 1646, 1802
RsaNI	GTAC	6 cut(s)	131, 310, 762, 882, 1645, 1801
RseI	CAYNNNNRTG	3 cut(s)	1508, 1727, 1740
SacI	GAGCTC	1 cut(s)	1390
SacII	CCGCGG	1 cut(s)	1026
SatI	GCNGC	8 cut(s)	501, 877, 939, 970, 1023, 1266, 1827, 2121
Sau96I	GGNCC	3 cut(s)	1513, 1523, 1625
ScaI	AGTACT	1 cut(s)	763
SchI	GAGTC	3 cut(s)	622, 1037, 1138
ScrFI	CCNGG	2 cut(s)	158, 337
SduI	GDGCHC	3 cut(s)	1390, 1438, 1939
SfaNI	GCATC	7 cut(s)	467, 592, 733, 967, 1177, 1592, 1736
SfcI	CTRYAG	2 cut(s)	1155, 1899
SfiI	GGCCNNNNNGGCC	1 cut(s)	1521
Sfr274I	CTCGAG	1 cut(s)	1925
Sfr303I	CCGCGG	1 cut(s)	1026
SgrBI	CCGCGG	1 cut(s)	1026
SinI	GGWCC	1 cut(s)	1625
SlaI	CTCGAG	1 cut(s)	1925
SmiMI	CAYNNNNRTG	3 cut(s)	1508, 1727, 1740
SmlI	CTYRAG	4 cut(s)	630, 688, 1925, 2126
SmoI	CTYRAG	4 cut(s)	630, 688, 1925, 2126
SphI	GCATGC	1 cut(s)	1702
SsiI	CCGC	3 cut(s)	876, 1023, 1025
SspI	AATATT	2 cut(s)	565, 922
SspMI	CTAG	5 cut(s)	57, 369, 593, 1346, 2064
SstI	GAGCTC	1 cut(s)	1390
StyD4I	CCNGG	2 cut(s)	156, 335
StyI	CCWWGG	3 cut(s)	592, 1116, 2090
TaaI	ACNGT	6 cut(s)	151, 277, 571, 778, 1159, 1886
TaiI	ACGT	3 cut(s)	835, 1345, 1487
TaqI	TCGA	3 cut(s)	71, 1926, 2172
TatI	WGTACW	3 cut(s)	761, 881, 1800
TauI	GCSGC	2 cut(s)	879, 1025
TfiI	GAWTC	9 cut(s)	8, 73, 319, 653, 955, 1403, 1413, 1654, 2102
TscAI	CASTG	3 cut(s)	957, 979, 1515
TseFI	GTSAC	2 cut(s)	361, 1718
TseI	GCWGC	6 cut(s)	500, 938, 969, 1265, 1826, 2120
Tsp45I	GTSAC	2 cut(s)	361, 1718
TspDTI	ATGAA	6 cut(s)	426, 815, 1405, 1724, 2004, 2070
TspRI	CASTG	3 cut(s)	957, 979, 1515
Tth111I	GACNNNGTC	1 cut(s)	1673
VpaK11BI	GGWCC	1 cut(s)	1625
XagI	CCTNNNNNAGG	2 cut(s)	596, 2021
XapI	RAATTY	4 cut(s)	356, 752, 817, 2058
XceI	RCATGY	1 cut(s)	1702
XhoI	CTCGAG	1 cut(s)	1925
XmaJI	CCTAGG	1 cut(s)	592
XmiI	GTMKAC	3 cut(s)	869, 889, 1677
XspI	CTAG	5 cut(s)	57, 369, 593, 1346, 2064
ZrmI	AGTACT	1 cut(s)	763
Zsp2I	ATGCAT	1 cut(s)	982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.