Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010726

Physical Location & Seq

Genomic Coordinates Forward (+)

63392418 .. 63394965

Gene Structure 2548 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0501700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTTCCAAGAAGGGCGACTACAACCCTCACTCCGGCGACGGCGCTAGCCCTGGAAAGATATTCATCGGAGGCTTGGCAAAGAACACCACCTTAGAGACCTTCATTAAGTACTTTGAGAAGTATGGGGAGATAATTGATTCTGTCATCATGAAGGACCGCCAAACGGGGCTTCCTAGGGGTTTCGGCTTTATAACCTATGCCGATCCTTCTGTTGTTGACCAGGTTATTCAAGAGACTCACGTCATCAATGACAAGCAGGTTGAGATAAAGAGAACCATTCCAAAAGGTGCCGGACAAGCTAATGATTTCAAAACTAAGAAAGTTTTTGTAGGCGGGATTCCAAGAACTGTTACAGAAGATGAATTGAAAGATTTCTTTTCAAAGTATGGTAATGTAGATGAGCATCAGATCATACGCGAGCATGCCACTAACCGCTCTCGAGGGTTTGGATTTGTTGTATTTGAGAGCGAAAAAGTTGTTGATAATTTGCTGGCAAATGGAAATAAAATTGATATGGATGGAACACAGGTTGAGATCAAGAAGGCTGAACCGAAGAAGGCCTCAAACCCCGCTCATGTTCCTGCCTTCAGTAGAGACTCTAGGGCACCCCCATACCATGCTAGTTATGATTTAGTCGGCAACACATATAGTGGTTATGGCCCTGGTGGTTATGGCCTTCCTTCGTATGGCCCTCCTTCCTATAGGTCACATGGAGAATTTGGCAATAGGTTTGATGATTACAATGGTTATTCAGATGCTAATGATGTTGGTGTTGGGTTTGAGGGTCTCAGAGGTGGCCCTTTTCCTGGTTATCACGGAGATTCTTCATTCGGGTATCCTAGTAGATTTTCATCCTATCGTGGAGGGCTTGGTGGAGGATATGGTGGTAGCGGGTTAGGTGCATATGGGCGTGAAGCTAGGGGCTATGGAAGCTATGCTGGGTCAGGCTCGGGTGATGGTTATGATTCAGGCCCTGGTGCTAGTTATGAAGGACCGCGAGGCTTGTACGGTGCTAGTAGGGCAGGATACGGTGGCAGTAGTCGTTACCACCCTTATGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

355

Amino Acids

38.13

Weight (kDa)

7.78

Isoelectric Point (pI)

22.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	21 - 81	1.2e-12	RNA recognition motif
RRM_7	PF16367	107 - 170	3.2e-10	RNA recognition motif
RRM_1	PF00076	109 - 178	4e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44070 AT5G38640
fragaria_vesca	FvH4_6g45430
malus_domestica	MD09G1083100.v1.1 MD17G1073400.v1.1
prunus_persica	Prupe.3G240400_v2.0.a1 Prupe.3G240400_v2.0.a1
pyrus_communis	pycom17g07430
rosa_chinensis	RchiOBHm_Chr2g0163261
rosa_laevigata	RLG00000021386
rosa_multiflora	Rmu_sc0002045.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087430
rosa_rugosa	Rorug02G0501700 Rorug02G0501800 Rorug02G0501900
rosa_samantha	Rh2AG568600 Rh2BG580700 Rh2CG550300 Rh2DG590600
rosa_wichuraiana	Rw2G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	194
Acc36I	ACCTGC	1 cut(s)	250
AccB1I	GGYRCC	2 cut(s)	290, 607
AccBSI	CCGCTC	2 cut(s)	438, 575
AccII	CGCG	2 cut(s)	420, 1000
AciI	CCGC	6 cut(s)	160, 336, 436, 573, 894, 998
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	719
AcuI	CTGAAG	1 cut(s)	574
AfaI	GTAC	2 cut(s)	113, 1010
AfiI	CCNNNNNNNGG	4 cut(s)	35, 166, 689, 809
AgsI	TTSAA	4 cut(s)	233, 313, 370, 384
AjiI	CACGTC	1 cut(s)	244
AjnI	CCWGG	5 cut(s)	52, 222, 664, 808, 976
AjuI	GAANNNNNNNTTGG	2 cut(s)	156, 188
AluBI	AGCT	3 cut(s)	302, 920, 936
AluI	AGCT	3 cut(s)	302, 920, 936
Alw26I	GTCTC	4 cut(s)	92, 230, 591, 794
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	977
Ama87I	CYCGRG	2 cut(s)	441, 952
AoxI	GGCC	6 cut(s)	561, 661, 676, 691, 799, 973
ApoI	RAATTY	1 cut(s)	719
Asp700I	GAANNNNTTC	1 cut(s)	374
AspA2I	CCTAGG	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	47
AspS9I	GGNCC	6 cut(s)	157, 662, 692, 800, 974, 995
AsuHPI	GGTGA	1 cut(s)	968
AsuNHI	GCTAGC	1 cut(s)	47
AvaI	CYCGRG	2 cut(s)	441, 952
AvaII	GGWCC	2 cut(s)	157, 995
AvrII	CCTAGG	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	610
BanI	GGYRCC	2 cut(s)	290, 607
BarI	GAAGNNNNNNTAC	1 cut(s)	37
BccI	CCATC	2 cut(s)	515, 953
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	5 cut(s)	54, 224, 666, 810, 978
BciVI	GTATCC	2 cut(s)	849, 1022
BcoDI	GTCTC	4 cut(s)	92, 230, 591, 794
BfaI	CTAG	8 cut(s)	48, 177, 603, 624, 843, 921, 984, 1017
BfmI	CTRYAG	1 cut(s)	703
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	250
BfuI	GTATCC	2 cut(s)	849, 1022
BlnI	CCTAGG	1 cut(s)	176
BmcAI	AGTACT	1 cut(s)	113
Bme1390I	CCNGG	5 cut(s)	54, 224, 666, 810, 978
Bme18I	GGWCC	2 cut(s)	157, 995
BmeT110I	CYCGRG	2 cut(s)	441, 952
BmgBI	CACGTC	1 cut(s)	244
BmgT120I	GGNCC	6 cut(s)	157, 662, 692, 800, 974, 995
BmiI	GGNNCC	2 cut(s)	292, 609
BmrFI	CCNGG	5 cut(s)	54, 224, 666, 810, 978
BmsI	GCATC	2 cut(s)	415, 748
BmtI	GCTAGC	1 cut(s)	51
BoxI	GACNNNNGTC	1 cut(s)	242
BsaBI	GATNNNNATC	3 cut(s)	65, 405, 853
BsaI	GGTCTC	2 cut(s)	92, 794
BsaJI	CCNNGG	4 cut(s)	52, 176, 664, 976
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	4 cut(s)	35, 166, 689, 809
Bse8I	GATNNNNATC	3 cut(s)	65, 405, 853
BseBI	CCWGG	5 cut(s)	54, 224, 666, 810, 978
BseDI	CCNNGG	4 cut(s)	52, 176, 664, 976
BseGI	GGATG	2 cut(s)	526, 854
BseJI	GATNNNNATC	3 cut(s)	65, 405, 853
BseLI	CCNNNNNNNGG	4 cut(s)	35, 166, 689, 809
BseMII	CTCAG	1 cut(s)	805
BseSI	GKGCMC	1 cut(s)	610
BseYI	CCCAGC	1 cut(s)	941
Bsh1236I	CGCG	2 cut(s)	420, 1000
BshFI	GGCC	6 cut(s)	563, 663, 678, 693, 801, 975
BshNI	GGYRCC	2 cut(s)	290, 607
BsiHKCI	CYCGRG	2 cut(s)	441, 952
BsiSI	CCGG	2 cut(s)	36, 294
BslI	CCNNNNNNNGG	4 cut(s)	35, 166, 689, 809
BsmAI	GTCTC	4 cut(s)	92, 230, 591, 794
BsnI	GGCC	6 cut(s)	563, 663, 678, 693, 801, 975
Bso31I	GGTCTC	2 cut(s)	92, 794
BsoBI	CYCGRG	2 cut(s)	441, 952
Bsp1286I	GDGCHC	1 cut(s)	610
Bsp143I	GATC	3 cut(s)	205, 411, 537
BspACI	CCGC	6 cut(s)	160, 336, 436, 573, 894, 998
BspANI	GGCC	6 cut(s)	563, 663, 678, 693, 801, 975
BspCNI	CTCAG	1 cut(s)	804
BspFNI	CGCG	2 cut(s)	420, 1000
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	292, 609
BspMI	ACCTGC	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	51
BspPI	GGATC	1 cut(s)	200
BspT107I	GGYRCC	2 cut(s)	290, 607
BspTNI	GGTCTC	2 cut(s)	92, 794
BsrBI	CCGCTC	2 cut(s)	438, 575
BssECI	CCNNGG	4 cut(s)	52, 176, 664, 976
BssMI	GATC	3 cut(s)	205, 411, 537
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	5 cut(s)	54, 224, 666, 810, 978
Bst4CI	ACNGT	3 cut(s)	352, 1013, 1034
BstC8I	GCNNGC	4 cut(s)	49, 422, 426, 495
BstDEI	CTNAG	3 cut(s)	94, 318, 791
BstF5I	GGATG	2 cut(s)	526, 854
BstFNI	CGCG	2 cut(s)	420, 1000
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	3 cut(s)	208, 414, 540
BstMAI	GTCTC	4 cut(s)	92, 230, 591, 794
BstMBI	GATC	3 cut(s)	205, 411, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 933, 1022
BstNI	CCWGG	5 cut(s)	54, 224, 666, 810, 978
BstNSI	RCATGY	1 cut(s)	428
BstPAI	GACNNNNGTC	1 cut(s)	242
BstSCI	CCNGG	5 cut(s)	52, 222, 664, 808, 976
BstSFI	CTRYAG	1 cut(s)	703
BstSLI	GKGCMC	1 cut(s)	610
BstUI	CGCG	2 cut(s)	420, 1000
BstXI	CCANNNNNNTGG	1 cut(s)	1058
BsuI	GTATCC	2 cut(s)	849, 1022
BsuRI	GGCC	6 cut(s)	563, 663, 678, 693, 801, 975
BtrI	CACGTC	1 cut(s)	244
BtsCI	GGATG	2 cut(s)	526, 854
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	4 cut(s)	49, 422, 426, 495
CaiI	CAGNNNCTG	1 cut(s)	977
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	47
Cfr13I	GGNCC	6 cut(s)	157, 662, 692, 800, 974, 995
CsiI	ACCWGGT	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	112, 1009
CviAII	CATG	5 cut(s)	151, 425, 578, 620, 713
CviQI	GTAC	2 cut(s)	112, 1009
DdeI	CTNAG	3 cut(s)	94, 318, 791
DpnI	GATC	3 cut(s)	207, 413, 539
DpnII	GATC	3 cut(s)	205, 411, 537
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	563
Eco31I	GGTCTC	2 cut(s)	92, 794
Eco47I	GGWCC	2 cut(s)	157, 995
Eco57I	CTGAAG	1 cut(s)	574
Eco88I	CYCGRG	2 cut(s)	441, 952
EcoO109I	RGGNCCY	1 cut(s)	974
EcoRII	CCWGG	5 cut(s)	52, 222, 664, 808, 976
EcoT14I	CCWWGG	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	5 cut(s)	154, 428, 581, 623, 716
FatI	CATG	5 cut(s)	150, 424, 577, 619, 712
FauI	CCCGC	3 cut(s)	329, 580, 887
FauNDI	CATATG	1 cut(s)	907
FokI	GGATG	2 cut(s)	533, 841
FspBI	CTAG	8 cut(s)	48, 177, 603, 624, 843, 921, 984, 1017
GlaI	GCGC	1 cut(s)	46
GsaI	CCCAGC	1 cut(s)	945
HaeII	RGCGCY	1 cut(s)	48
HaeIII	GGCC	6 cut(s)	563, 663, 678, 693, 801, 975
HapII	CCGG	2 cut(s)	36, 294
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	5 cut(s)	154, 428, 581, 623, 716
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	6 cut(s)	140, 238, 340, 599, 824, 968
HpaII	CCGG	2 cut(s)	36, 294
HphI	GGTGA	1 cut(s)	968
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	71, 411, 757, 794
Hpy188III	TCNNGA	4 cut(s)	151, 233, 441, 541
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	3 cut(s)	352, 1013, 1034
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	905
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 933, 1022
HpyF3I	CTNAG	3 cut(s)	94, 318, 791
HpySE526I	ACGT	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	154, 428, 581, 623, 716
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	3 cut(s)	205, 411, 537
LweI	GCATC	2 cut(s)	415, 748
MabI	ACCWGGT	1 cut(s)	222
MaeI	CTAG	8 cut(s)	48, 177, 603, 624, 843, 921, 984, 1017
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	352, 708, 1046
MalI	GATC	3 cut(s)	207, 413, 539
MbiI	CCGCTC	2 cut(s)	438, 575
MboI	GATC	3 cut(s)	205, 411, 537
MboII	GAAGA	3 cut(s)	371, 568, 819
MhlI	GDGCHC	1 cut(s)	610
MluCI	AATT	5 cut(s)	135, 365, 487, 510, 719
MlyI	GAGTC	2 cut(s)	232, 593
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	1056
MspI	CCGG	2 cut(s)	36, 294
MspR9I	CCNGG	5 cut(s)	54, 224, 666, 810, 978
MvaI	CCWGG	5 cut(s)	54, 224, 666, 810, 978
MvnI	CGCG	2 cut(s)	420, 1000
MwoI	GCNNNNNNNGC	3 cut(s)	299, 933, 1022
NdeI	CATATG	1 cut(s)	907
NdeII	GATC	3 cut(s)	205, 411, 537
NheI	GCTAGC	1 cut(s)	47
NlaIII	CATG	5 cut(s)	154, 428, 581, 623, 716
NlaIV	GGNNCC	2 cut(s)	292, 609
NmuCI	GTSAC	1 cut(s)	708
NspI	RCATGY	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	428
PaeR7I	CTCGAG	1 cut(s)	441
PagI	TCATGA	1 cut(s)	150
PceI	AGGCCT	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	374
PfeI	GAWTC	4 cut(s)	140, 340, 824, 968
PleI	GAGTC	2 cut(s)	232, 593
PpsI	GAGTC	2 cut(s)	232, 593
PshAI	GACNNNNGTC	1 cut(s)	242
PsiI	TTATAA	1 cut(s)	194
Psp6I	CCWGG	5 cut(s)	52, 222, 664, 808, 976
PspFI	CCCAGC	1 cut(s)	941
PspGI	CCWGG	5 cut(s)	52, 222, 664, 808, 976
PspN4I	GGNNCC	2 cut(s)	292, 609
PspPI	GGNCC	6 cut(s)	157, 662, 692, 800, 974, 995
PstNI	CAGNNNCTG	1 cut(s)	977
RsaI	GTAC	2 cut(s)	113, 1010
RsaNI	GTAC	2 cut(s)	112, 1009
RseI	CAYNNNNRTG	1 cut(s)	1056
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	205, 411, 537
Sau96I	GGNCC	6 cut(s)	157, 662, 692, 800, 974, 995
ScaI	AGTACT	1 cut(s)	113
SchI	GAGTC	2 cut(s)	232, 593
ScrFI	CCNGG	5 cut(s)	54, 224, 666, 810, 978
SduI	GDGCHC	1 cut(s)	610
SexAI	ACCWGGT	1 cut(s)	222
SfaNI	GCATC	2 cut(s)	415, 748
SfcI	CTRYAG	1 cut(s)	703
Sfr274I	CTCGAG	1 cut(s)	441
SinI	GGWCC	2 cut(s)	157, 995
SlaI	CTCGAG	1 cut(s)	441
SmiMI	CAYNNNNRTG	1 cut(s)	1056
SmlI	CTYRAG	1 cut(s)	441
SmoI	CTYRAG	1 cut(s)	441
SphI	GCATGC	1 cut(s)	428
Sse9I	AATT	5 cut(s)	135, 365, 487, 510, 719
SseBI	AGGCCT	1 cut(s)	563
SsiI	CCGC	6 cut(s)	160, 336, 436, 573, 894, 998
SspMI	CTAG	8 cut(s)	48, 177, 603, 624, 843, 921, 984, 1017
StuI	AGGCCT	1 cut(s)	563
StyD4I	CCNGG	5 cut(s)	52, 222, 664, 808, 976
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	3 cut(s)	352, 1013, 1034
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	1 cut(s)	442
TasI	AATT	5 cut(s)	135, 365, 487, 510, 719
TatI	WGTACW	1 cut(s)	111
TfiI	GAWTC	4 cut(s)	140, 340, 824, 968
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	708
Tsp45I	GTSAC	1 cut(s)	708
TspDTI	ATGAA	7 cut(s)	55, 94, 167, 378, 819, 843, 1005
TspGWI	ACGGA	1 cut(s)	834
VpaK11BI	GGWCC	2 cut(s)	157, 995
XapI	RAATTY	1 cut(s)	719
XceI	RCATGY	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	441
XmaJI	CCTAGG	1 cut(s)	176
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	8 cut(s)	48, 177, 603, 624, 843, 921, 984, 1017
ZrmI	AGTACT	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.