Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010726

Physical Location & Seq

Genomic Coordinates Reverse (-)

63428597 .. 63431346

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0501900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGTTGTTGGCTAATGCCAACCTCATCTCCTGCAACTTCTCAACCTTCCCATCATCCCTTCCACCCAAAACCCAAAACTCCAAAACTTCACTCCAAACCCAAAACCTCAAGCCCAGGATTTCACACTCCAAAACAGCCTCAAAAGTTTCAACCTTTTTTGGACCCCACAATGGTAAAGCTTCAATCTTTACATTCCACAAGGGCCAGCTTCAAATTTGTCACAGTACCTTGAATAGCCAGAAACCAGAAGACCAAGTTCTGAATGAAGGTGAATCCTTGAAGAGTGAAAATGGTGGTGATGAAAGGAACTGGACAACCTCAATTTTGCTATTTCTGTTGTGGGGGGCACTCATGTTCTATGTGTTCAATCTTTCTCCAGATCAGACCCCGTCAAGGGACATGTATTTCTTAAAGAAACTCTTGAATTTGAAGGGAGATGATGGTTTTAGAATGAATGAAGTGCTTGTGTCTGTCTGGTACATAATGGGTTTGTGGCCTTTGGTGTATAGCATGCTGCTGCTTCCAACAGGGAGAAGCTCAAAAAGCAGCATTCCTGTCTGGCCTTTCTTAATACTTTCATGCTTCGGTGGAGCATATGCCCTTCTTCCATACTTTGTACTTTGGAAACCACCACCACCTACTGTTGATGAAAGTGAGCTCGGAAGATGGCCTCTCAACTTTCTAGAATCTAAATTAACTGCTGGGGGCTGGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007272 GO:0007275 GO:0007399 GO:0007417 GO:0007548 GO:0008150 GO:0008152 GO:0008366 GO:0008406 GO:0008585 GO:0009058 GO:0009059 GO:0009987 GO:0010001 GO:0010467 GO:0014003 GO:0019538 GO:0021782 GO:0022008 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0034645 GO:0042063 GO:0042552 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048608 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051716 GO:0061458 GO:0065007 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

IF-2B

Protein Analysis

238

Amino Acids

26.71

Weight (kDa)

9.1

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010726)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44070 AT5G38640
fragaria_vesca	FvH4_6g45430
malus_domestica	MD09G1083100.v1.1 MD17G1073400.v1.1
prunus_persica	Prupe.3G240400_v2.0.a1 Prupe.3G240400_v2.0.a1
pyrus_communis	pycom17g07430
rosa_chinensis	RchiOBHm_Chr2g0163261
rosa_laevigata	RLG00000021386
rosa_multiflora	Rmu_sc0002045.1_g000009
rosa_roxburghii	Rroxscaffold_2G00087430
rosa_rugosa	Rorug02G0501700 Rorug02G0501800 Rorug02G0501900
rosa_samantha	Rh2AG568600 Rh2BG580700 Rh2CG550300 Rh2DG590600
rosa_wichuraiana	Rw2G047040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	213, 424
AfaI	GTAC	3 cut(s)	226, 479, 618
AfiI	CCNNNNNNNGG	3 cut(s)	170, 393, 394
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	8 cut(s)	150, 183, 212, 232, 280, 367, 424, 430
AjnI	CCWGG	1 cut(s)	113
AluBI	AGCT	4 cut(s)	179, 208, 537, 658
AluI	AGCT	4 cut(s)	179, 208, 537, 658
Alw21I	GWGCWC	1 cut(s)	660
AoxI	GGCC	4 cut(s)	202, 494, 560, 668
ApeKI	GCWGC	3 cut(s)	514, 517, 546
ApoI	RAATTY	2 cut(s)	213, 424
AspS9I	GGNCC	2 cut(s)	161, 202
AsuHPI	GGTGA	2 cut(s)	281, 308
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	660
BbvI	GCAGC	3 cut(s)	501, 504, 558
BccI	CCATC	3 cut(s)	58, 434, 660
BciT130I	CCWGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	683
BisI	GCNGC	3 cut(s)	515, 518, 547
BlsI	GCNGC	3 cut(s)	516, 519, 548
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 202
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	255
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	170, 393, 394
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	1 cut(s)	113
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	170, 393, 394
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	3 cut(s)	501, 504, 558
BseYI	CCCAGC	2 cut(s)	701, 708
BshFI	GGCC	4 cut(s)	204, 496, 562, 670
BsiHKAI	GWGCWC	1 cut(s)	660
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	3 cut(s)	170, 393, 394
BsmFI	GGGAC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	4 cut(s)	204, 496, 562, 670
Bsp1286I	GDGCHC	2 cut(s)	349, 660
Bsp143I	GATC	1 cut(s)	379
BspANI	GGCC	4 cut(s)	204, 496, 562, 670
BspLI	GGNNCC	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	113
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	224, 643
Bst6I	CTCTTC	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	206, 512
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	543
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	2 cut(s)	403, 514
BstSCI	CCNGG	1 cut(s)	113
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	3 cut(s)	501, 504, 558
BstV2I	GAAGAC	1 cut(s)	255
BsuRI	GGCC	4 cut(s)	204, 496, 562, 670
BtsCI	GGATG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	206, 512
Cfr13I	GGNCC	2 cut(s)	161, 202
Csp6I	GTAC	3 cut(s)	225, 478, 617
CviAII	CATG	4 cut(s)	352, 400, 511, 579
CviQI	GTAC	3 cut(s)	225, 478, 617
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	275
EarI	CTCTTC	1 cut(s)	275
Ecl136II	GAGCTC	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	660
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	1 cut(s)	658
EcoICRI	GAGCTC	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	113
EcoT38I	GRGCYC	1 cut(s)	660
FaeI	CATG	4 cut(s)	355, 403, 514, 582
FalI	AAGNNNNNCTT	2 cut(s)	404, 436
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	351, 399, 510, 578
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	3 cut(s)	515, 518, 547
FokI	GGATG	1 cut(s)	40
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	3 cut(s)	515, 518, 547
FspBI	CTAG	1 cut(s)	683
GluI	GCNGC	3 cut(s)	515, 518, 547
GsaI	CCCAGC	2 cut(s)	705, 712
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	204, 496, 562, 670
Hin1II	CATG	4 cut(s)	355, 403, 514, 582
HindIII	AAGCTT	1 cut(s)	177
HinfI	GANTC	2 cut(s)	272, 686
HphI	GGTGA	2 cut(s)	281, 308
Hpy188I	TCNGA	3 cut(s)	261, 384, 662
Hpy188III	TCNNGA	3 cut(s)	377, 421, 683
HpyAV	CCTTC	5 cut(s)	55, 68, 260, 424, 611
HpyCH4III	ACNGT	2 cut(s)	224, 643
HpyCH4V	TGCA	1 cut(s)	33
HpyF10VI	GCNNNNNNNGC	1 cut(s)	543
Hsp92II	CATG	4 cut(s)	355, 403, 514, 582
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	590
Lsp1109I	GCAGC	3 cut(s)	501, 504, 558
MaeI	CTAG	1 cut(s)	683
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	260, 292, 596, 675
MhlI	GDGCHC	2 cut(s)	349, 660
MluCI	AATT	4 cut(s)	213, 321, 424, 692
MmeI	TCCRAC	1 cut(s)	548
MnlI	CCTC	5 cut(s)	32, 116, 148, 328, 681
MseI	TTAA	3 cut(s)	410, 569, 695
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	549
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	543
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	4 cut(s)	355, 403, 514, 582
NlaIV	GGNNCC	1 cut(s)	163
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	403, 514
PaeI	GCATGC	1 cut(s)	514
PciI	ACATGT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	549
PfeI	GAWTC	2 cut(s)	272, 686
PflFI	GACNNNGTC	1 cut(s)	388
PkrI	GCNGC	3 cut(s)	516, 519, 548
PscI	ACATGT	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	660
Psp6I	CCWGG	1 cut(s)	113
PspFI	CCCAGC	2 cut(s)	701, 708
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	161, 202
PsyI	GACNNNGTC	1 cut(s)	388
RsaI	GTAC	3 cut(s)	226, 479, 618
RsaNI	GTAC	3 cut(s)	225, 478, 617
SacI	GAGCTC	1 cut(s)	660
SaqAI	TTAA	3 cut(s)	410, 569, 695
SatI	GCNGC	3 cut(s)	515, 518, 547
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	2 cut(s)	161, 202
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	349, 660
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
SphI	GCATGC	1 cut(s)	514
Sse9I	AATT	4 cut(s)	213, 321, 424, 692
SspMI	CTAG	1 cut(s)	683
SstI	GAGCTC	1 cut(s)	660
StyD4I	CCNGG	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	224, 643
TasI	AATT	4 cut(s)	213, 321, 424, 692
TatI	WGTACW	1 cut(s)	616
TfiI	GAWTC	2 cut(s)	272, 686
Tru1I	TTAA	3 cut(s)	410, 569, 695
Tru9I	TTAA	3 cut(s)	410, 569, 695
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	514, 517, 546
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	6 cut(s)	279, 315, 467, 471, 567, 663
Tth111I	GACNNNGTC	1 cut(s)	388
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	2 cut(s)	213, 424
XbaI	TCTAGA	1 cut(s)	682
XceI	RCATGY	2 cut(s)	403, 514
XspI	CTAG	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.