Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007795

Physical Location & Seq

Genomic Coordinates Forward (+)

18328322 .. 18330420

Gene Structure 2099 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G44410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTCAACTAGTGTTCAAGGAGAGACAATGGATCTTGATTTGAATCAAGAGCCGTCTTCTGATTCGGAGTCTCCGGGTGGTTTGATGACGGCGCTTTCTCCAATGTTAGAAGAGCTTGAATCTGCTCAAGAGCGGATTCAAGAACGCATAAGACAGCTTGAAGTGATAGTTTCGAGAATCAGGGAACGAGAAATAACAACAACAACAACACCGGCTTTGGTGTCGCCTAACGAACATAGAGATTCAACTGCTGGAGTTATACATGAGCGTTCTCGAGAGAGACTTGTCGAAAATGGCGAAAACAAGACTTATTTGATAGCCAAGGCATTGAACATGGAGAAAACAAGCTCTGTTCCTGGTGGCTTCTTTGACTGCAACATATGTTTAGAGAAAGCTGAAGATCCGATTTTGACTTGTTGTGGTCATTTGTTCTGTTGGGGTTGCTTCTATCAGTTGCCTTTAATTTACTTAAACATAAAGGAATGTCCGGTTTGCGATGGGGAAGTGACTGACGCCGAGGTGATTCCGATATATGGTAATGGAGATGATTGTGATGGTACTAAACCAAAGTTAGAAGATTGTGGTATTAGTCTACCTCCAAGGCCTAATGCTAAAAGAGTGGAAAGTGTTCGTCAAAAGATCATAAACCGAGGGAACCCTTTCTTCCCTGGGCACGAAAACGAAGCAATCGAACATATTAGAAGAACTATTGATTCCATAGGACTACAAGCTTTAGCTCAAGGCGATGAGTTTGGTTTGACAAACATAATAAACAATGGAGGAGACAATGGTGGACAACAACAACAACAACAACATCATCATCATCATCATCCGCCTTTTGGACCTTTGAGGTTATTGCCACCATATGCTACTTTCCCAGGTCTTCTAGTTGATACCTCAGACATACCAGCACCCTTTGATGATGATGCTTTTGATGTTGATAGTTTTGTTGACACAACTAGTTTGAGAAGAAACCGTAGAAGACCTTCACCAGCCGTACGAGCTTCTTATCAGAGAAACCGAAGTAACAATGCTTCTCAAACGATTTCGTTCAGGCTCGGTTCTTCAGCTTCATCAGCACCTAGAGAGTTTGCTGTTCCAAGCTCCTCCATTATGACGAGAAGCCAAACTGTAAACCCTACTGAAGTGGTTACTTCGAGTACTTCAGCTTCATCGTCTAGGAGAAGAACAGAAGATGTAAACAATGGACCTCGGACCAGGTCTAGAAGGAGGCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0030163 GO:0031984 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_5

Protein Analysis

413

Amino Acids

45.84

Weight (kDa)

5.73

Isoelectric Point (pI)

69.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_5	PF14634	124 - 166	1.2e-07	zinc-RING finger domain
zf-C3HC4_3	PF13920	125 - 171	2.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	125 - 149	2.8e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44410
fragaria_vesca	FvH4_7g00150 FvH4_7g00150 FvH4_7g00150
malus_domestica	MD02G1318800.v1.1 MD07G1002400.v1.1
prunus_persica	Prupe.2G003800_v2.0.a1 Prupe.2G003800_v2.0.a1 Prupe.2G003800_v2.0.a1
pyrus_communis	pycom02g26710 pycom07g00240
rosa_chinensis	RchiOBHm_Chr1g0313401
rosa_laevigata	RLG00000030800
rosa_multiflora	Rmu_sc0000035.1_g000030 Rmu_sc0000035.1_g000044
rosa_roxburghii	Rroxscaffold_4G00332220
rosa_rugosa	RorugPtG0004700.1
rosa_samantha	Rh1AG003200 Rh1BG000200 Rh1CG001400 Rh1CG007600 Rh1DG002700 Rh1DG003100
rosa_wichuraiana	Rw1G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	592
AciI	CCGC	2 cut(s)	133, 833
AclWI	GGATC	2 cut(s)	39, 395
AcuI	CTGAAG	4 cut(s)	417, 1050, 1149, 1164
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	3 cut(s)	559, 999, 1162
AfiI	CCNNNNNNNGG	2 cut(s)	533, 839
AgsI	TTSAA	7 cut(s)	17, 43, 119, 140, 161, 246, 331
AhlI	ACTAGT	2 cut(s)	8, 959
AjnI	CCWGG	4 cut(s)	355, 667, 877, 1217
Alw26I	GTCTC	4 cut(s)	17, 75, 274, 777
AlwI	GGATC	2 cut(s)	39, 395
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	602
Asp700I	GAANNNNTTC	3 cut(s)	627, 659, 985
AspLEI	GCGC	1 cut(s)	94
AspS9I	GGNCC	3 cut(s)	842, 1208, 1215
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	532, 981
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	3 cut(s)	842, 1208, 1215
BaeGI	GKGCMC	1 cut(s)	675
BarI	GAAGNNNNNNTAC	6 cut(s)	970, 1002, 1018, 1050, 1153, 1185
BbsI	GAAGAC	3 cut(s)	48, 875, 988
BbvCI	CCTCAGC	1 cut(s)	1235
BccI	CCATC	2 cut(s)	491, 548
BceAI	ACGGC	3 cut(s)	37, 105, 980
BciT130I	CCWGG	4 cut(s)	357, 669, 879, 1219
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	4 cut(s)	17, 75, 274, 777
BcuI	ACTAGT	2 cut(s)	8, 959
BfaI	CTAG	6 cut(s)	9, 887, 960, 1083, 1179, 1224
BfoI	RGCGCY	1 cut(s)	95
BmcAI	AGTACT	1 cut(s)	1162
Bme1390I	CCNGG	5 cut(s)	75, 357, 669, 879, 1219
Bme18I	GGWCC	3 cut(s)	842, 1208, 1215
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	842, 1208, 1215
BmiI	GGNNCC	1 cut(s)	656
BmrFI	CCNGG	5 cut(s)	75, 357, 669, 879, 1219
BmsI	GCATC	1 cut(s)	916
BpiI	GAAGAC	3 cut(s)	48, 875, 988
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	1235
BpuEI	CTTGAG	2 cut(s)	111, 723
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	42
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	8 cut(s)	321, 516, 599, 649, 667, 668, 877, 1211
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 839
Bse118I	RCCGGY	1 cut(s)	211
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	4 cut(s)	357, 669, 879, 1219
BseDI	CCNNGG	8 cut(s)	321, 516, 599, 649, 667, 668, 877, 1211
BseGI	GGATG	1 cut(s)	829
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	2 cut(s)	533, 839
BseMII	CTCAG	2 cut(s)	912, 1226
BseRI	GAGGAG	2 cut(s)	795, 1096
BseSI	GKGCMC	1 cut(s)	675
BshFI	GGCC	1 cut(s)	604
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	74, 212, 488
BsiWI	CGTACG	1 cut(s)	997
BslI	CCNNNNNNNGG	2 cut(s)	533, 839
BsmAI	GTCTC	4 cut(s)	17, 75, 274, 777
BsnI	GGCC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	31, 400, 639
BspACI	CCGC	2 cut(s)	133, 833
BspANI	GGCC	1 cut(s)	604
BspCNI	CTCAG	2 cut(s)	911, 1227
BspLI	GGNNCC	1 cut(s)	656
BspPI	GGATC	2 cut(s)	39, 395
BspQI	GCTCTTC	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	133
BsrFI	RCCGGY	1 cut(s)	211
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	8 cut(s)	321, 516, 599, 649, 667, 668, 877, 1211
BssMI	GATC	3 cut(s)	31, 400, 639
BssNI	GRCGYC	1 cut(s)	513
BssT1I	CCWWGG	2 cut(s)	321, 599
Bst2UI	CCWGG	4 cut(s)	357, 669, 879, 1219
Bst4CI	ACNGT	2 cut(s)	977, 1132
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	513
BstDEI	CTNAG	2 cut(s)	898, 1235
BstF5I	GGATG	1 cut(s)	829
BstH2I	RGCGCY	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	94
BstKTI	GATC	3 cut(s)	34, 403, 642
BstMAI	GTCTC	4 cut(s)	17, 75, 274, 777
BstMBI	GATC	3 cut(s)	31, 400, 639
BstMWI	GCNNNNNNNGC	2 cut(s)	1001, 1076
BstNI	CCWGG	4 cut(s)	357, 669, 879, 1219
BstSCI	CCNGG	5 cut(s)	73, 355, 667, 877, 1217
BstSLI	GKGCMC	1 cut(s)	675
BstV2I	GAAGAC	3 cut(s)	48, 875, 988
BstX2I	RGATCY	2 cut(s)	31, 400
BstYI	RGATCY	2 cut(s)	31, 400
BsuRI	GGCC	1 cut(s)	604
BtgZI	GCGATG	2 cut(s)	510, 759
BtsCI	GGATG	1 cut(s)	829
CfoI	GCGC	1 cut(s)	94
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	842, 1208, 1215
CseI	GACGC	1 cut(s)	521
CsiI	ACCWGGT	1 cut(s)	1217
Csp6I	GTAC	3 cut(s)	558, 998, 1161
CviAII	CATG	2 cut(s)	263, 334
CviQI	GTAC	3 cut(s)	558, 998, 1161
DdeI	CTNAG	2 cut(s)	898, 1235
DpnI	GATC	3 cut(s)	33, 402, 641
DpnII	GATC	3 cut(s)	31, 400, 639
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	822
Eco130I	CCWWGG	2 cut(s)	321, 599
Eco147I	AGGCCT	1 cut(s)	604
Eco47I	GGWCC	3 cut(s)	842, 1208, 1215
Eco57I	CTGAAG	4 cut(s)	417, 1050, 1149, 1164
Eco88I	CYCGRG	1 cut(s)	273
EcoRII	CCWGG	4 cut(s)	355, 667, 877, 1217
EcoT14I	CCWWGG	2 cut(s)	321, 599
ErhI	CCWWGG	2 cut(s)	321, 599
FaeI	CATG	2 cut(s)	266, 337
FatI	CATG	2 cut(s)	262, 333
FauNDI	CATATG	2 cut(s)	380, 865
FblI	GTMKAC	1 cut(s)	592
FokI	GGATG	1 cut(s)	816
FspBI	CTAG	6 cut(s)	9, 887, 960, 1083, 1179, 1224
GlaI	GCGC	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	95
HaeIII	GGCC	1 cut(s)	604
HapII	CCGG	3 cut(s)	74, 212, 488
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	266, 337
Hin6I	GCGC	1 cut(s)	92
HinP1I	GCGC	1 cut(s)	92
HincII	GTYRAC	2 cut(s)	6, 952
HindII	GTYRAC	2 cut(s)	6, 952
HindIII	AAGCTT	1 cut(s)	729
HinfI	GANTC	9 cut(s)	43, 62, 68, 119, 136, 177, 242, 523, 713
HpaII	CCGG	3 cut(s)	74, 212, 488
HphI	GGTGA	2 cut(s)	532, 981
Hpy166II	GTNNAC	6 cut(s)	6, 593, 794, 952, 1135, 1201
Hpy188I	TCNGA	7 cut(s)	61, 67, 405, 528, 901, 1014, 1215
Hpy188III	TCNNGA	8 cut(s)	35, 47, 128, 140, 174, 273, 275, 1224
Hpy8I	GTNNAC	6 cut(s)	6, 593, 794, 952, 1135, 1201
HpyAV	CCTTC	2 cut(s)	996, 1221
HpyCH4III	ACNGT	2 cut(s)	977, 1132
HpyCH4V	TGCA	1 cut(s)	375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1001, 1076
HpyF3I	CTNAG	2 cut(s)	898, 1235
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	266, 337
HspAI	GCGC	1 cut(s)	92
Kzo9I	GATC	3 cut(s)	31, 400, 639
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	1109
LweI	GCATC	1 cut(s)	916
MabI	ACCWGGT	1 cut(s)	1217
MaeI	CTAG	6 cut(s)	9, 887, 960, 1083, 1179, 1224
MaeIII	GTNAC	3 cut(s)	505, 1025, 1150
MalI	GATC	3 cut(s)	33, 402, 641
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	3 cut(s)	31, 400, 639
MflI	RGATCY	2 cut(s)	31, 400
MhlI	GDGCHC	1 cut(s)	675
MluCI	AATT	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	77
MroXI	GAANNNNTTC	3 cut(s)	627, 659, 985
MseI	TTAA	2 cut(s)	461, 470
MspI	CCGG	3 cut(s)	74, 212, 488
MspR9I	CCNGG	5 cut(s)	75, 357, 669, 879, 1219
MvaI	CCWGG	4 cut(s)	357, 669, 879, 1219
MwoI	GCNNNNNNNGC	2 cut(s)	1001, 1076
NciI	CCSGG	1 cut(s)	75
NdeI	CATATG	2 cut(s)	380, 865
NdeII	GATC	3 cut(s)	31, 400, 639
NlaIII	CATG	2 cut(s)	266, 337
NlaIV	GGNNCC	1 cut(s)	656
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	273
PasI	CCCWGGG	1 cut(s)	668
PceI	AGGCCT	1 cut(s)	604
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	294, 687
PdmI	GAANNNNTTC	3 cut(s)	627, 659, 985
PfeI	GAWTC	8 cut(s)	43, 62, 119, 136, 177, 242, 523, 713
Pfl23II	CGTACG	1 cut(s)	997
PflFI	GACNNNGTC	1 cut(s)	1219
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	4 cut(s)	355, 667, 877, 1217
PspGI	CCWGG	4 cut(s)	355, 667, 877, 1217
PspLI	CGTACG	1 cut(s)	997
PspN4I	GGNNCC	1 cut(s)	656
PspPI	GGNCC	3 cut(s)	842, 1208, 1215
PsuI	RGATCY	2 cut(s)	31, 400
PsyI	GACNNNGTC	1 cut(s)	1219
RsaI	GTAC	3 cut(s)	559, 999, 1162
RsaNI	GTAC	3 cut(s)	558, 998, 1161
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	461, 470
Sau3AI	GATC	3 cut(s)	31, 400, 639
Sau96I	GGNCC	3 cut(s)	842, 1208, 1215
ScaI	AGTACT	1 cut(s)	1162
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	5 cut(s)	75, 357, 669, 879, 1219
SduI	GDGCHC	1 cut(s)	675
SexAI	ACCWGGT	1 cut(s)	1217
SfaNI	GCATC	1 cut(s)	916
Sfr274I	CTCGAG	1 cut(s)	273
SinI	GGWCC	3 cut(s)	842, 1208, 1215
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	3 cut(s)	126, 273, 738
SmoI	CTYRAG	3 cut(s)	126, 273, 738
SpeI	ACTAGT	2 cut(s)	8, 959
Sse9I	AATT	1 cut(s)	462
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	2 cut(s)	133, 833
SspMI	CTAG	6 cut(s)	9, 887, 960, 1083, 1179, 1224
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	5 cut(s)	73, 355, 667, 877, 1217
StyI	CCWWGG	2 cut(s)	321, 599
TaaI	ACNGT	2 cut(s)	977, 1132
TaqI	TCGA	5 cut(s)	173, 274, 288, 690, 1157
TasI	AATT	1 cut(s)	462
TatI	WGTACW	1 cut(s)	1160
TfiI	GAWTC	8 cut(s)	43, 62, 119, 136, 177, 242, 523, 713
Tru1I	TTAA	2 cut(s)	461, 470
Tru9I	TTAA	2 cut(s)	461, 470
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	2 cut(s)	1062, 1161
Tth111I	GACNNNGTC	1 cut(s)	1219
VpaK11BI	GGWCC	3 cut(s)	842, 1208, 1215
XbaI	TCTAGA	1 cut(s)	1223
XhoI	CTCGAG	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	592
XmnI	GAANNNNTTC	3 cut(s)	627, 659, 985
XspI	CTAG	6 cut(s)	9, 887, 960, 1083, 1179, 1224
ZrmI	AGTACT	1 cut(s)	1162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.