Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007795

Physical Location & Seq

Genomic Coordinates Forward (+)

402846 .. 405666

Gene Structure 2821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGGGAATAATATGAGGGAAGAAATCATGATTTTGGATTGGAACCAGGAGCCTCATGATTCAGTGATCAGATTAGAATCCATACTCAATGAGCTTGAAACTGCCAATGGACGCATTGAAGAACGCATCAGACTACTAGAAGCAGTCACCTTCAGGGCTAGGCAGCGTGATAGGTGGCGACAACCTCATGCTTCCCCTCAGATGGTGAATATCACTGCAGGAGTTGGAGCTTCTGATGCACTACATGAAGGCATTCAGAATGGGAACGATGCTCTAGCTACCCGAGAAACAGTGGAATCTGGCAAAACCATTAGAGGTGACAAAATGCATTTGGTAGCCAAGGCACTGGGGATGGAGACGAATGCTAAAAAGGCAGAGTCTCGTTCTGGGAGCTTCTTTGATTGTAAGATATGCTTGGACATGGCAAGAGATCCTATATTGACATGTTGTGGTCATTTGTTTTGTTGGCCATGCTTCTGTCAGTTGCCATATGTGGATTCATATGCAAAGGAATGCCCTGAGTGTAAAGGAGAAGTTACTGATAAAAGTCTAATCCCAATTTATGGGAACGGGGATGGTAACTGTTCTCGCAAGTCAAAGGAGTCTGTTCCGATGGCCCCTCCTAGGCCCCGTGCAAACAGGATTGATGGTTTTAGGCAACAGCTTATTAGTCGAGGACCATCTTCTATTTTGATTGAAGAAAGGATTCAGCAAATTAGCGACATGGTTGGTGCAATGGGGGAGAGAAGACGGTCACAGGATCTTCTCGGTTCACATATCATGGCTGAAAGAACTACTTTCGTGTCCAGATCCCAGGCATCACCTGCCATTGAGACAACAAGTCACCCACAGCATGATTCCCTTCAAGTTTCAAGATTATTACAAGGAGCTGCTTCAGTATCTTCCTTTTCTTCAGCATTGAATACTGCAATGAATTCTGCAGAAAGATTAGTCGAGGACCTCGAGGCATACAGTAGTAGTCACCATGTGAGAAGAAACCACCAACAAGCTCCACATATTGGTAATGGAGATACATCTTCAAGCATCGCTGCAGTTTTACACCCAGATAGCCAGACTTCTGATACTGCTGCTGAAACCAATTCTGATGTGCTCCCTTCTGATTCTTTTTTAAGAACTGATACTGTTGTTGTGGACTTGGAAGACCAGACAACGGATTCAGAAATAAATTCTACACTGCCCTCTTCTTCTTCTCGGAGAAGAACTAATCCAAGAGGTTCTGACGTAAACAATGGACATTCATCTGAACGTAGAAGGAGAAGGTTGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0030163 GO:0031984 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_5

Protein Analysis

430

Amino Acids

47.52

Weight (kDa)

6.29

Isoelectric Point (pI)

65.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44410
fragaria_vesca	FvH4_7g00150 FvH4_7g00150 FvH4_7g00150
malus_domestica	MD02G1318800.v1.1 MD07G1002400.v1.1
prunus_persica	Prupe.2G003800_v2.0.a1 Prupe.2G003800_v2.0.a1 Prupe.2G003800_v2.0.a1
pyrus_communis	pycom02g26710 pycom07g00240
rosa_chinensis	RchiOBHm_Chr1g0313401
rosa_laevigata	RLG00000030800
rosa_multiflora	Rmu_sc0000035.1_g000030 Rmu_sc0000035.1_g000044
rosa_roxburghii	Rroxscaffold_4G00332220
rosa_rugosa	RorugPtG0004700.1
rosa_samantha	Rh1AG003200 Rh1BG000200 Rh1CG001400 Rh1CG007600 Rh1DG002700 Rh1DG003100
rosa_wichuraiana	Rw1G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	832
AbsI	CCTCGAGG	1 cut(s)	962
Acc36I	ACCTGC	1 cut(s)	832
AccB7I	CCANNNNNTGG	2 cut(s)	563, 1019
AclWI	GGATC	3 cut(s)	425, 768, 804
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	2 cut(s)	934, 1186
AcuI	CTGAAG	3 cut(s)	136, 879, 897
AdeI	CACNNNGTG	1 cut(s)	988
AfiI	CCNNNNNNNGG	5 cut(s)	202, 563, 624, 1019, 1171
AflIII	ACRYGT	1 cut(s)	443
AgsI	TTSAA	7 cut(s)	98, 119, 698, 866, 873, 922, 1041
AhdI	GACNNNNNGTC	1 cut(s)	840
AjnI	CCWGG	2 cut(s)	45, 813
AluBI	AGCT	7 cut(s)	94, 230, 278, 393, 664, 890, 1010
AluI	AGCT	7 cut(s)	94, 230, 278, 393, 664, 890, 1010
Alw21I	GWGCWC	1 cut(s)	1113
Alw26I	GTCTC	3 cut(s)	350, 384, 827
AlwI	GGATC	3 cut(s)	425, 768, 804
Ama87I	CYCGRG	2 cut(s)	282, 962
AoxI	GGCC	3 cut(s)	467, 615, 626
ApeKI	GCWGC	4 cut(s)	163, 890, 1049, 1088
ApoI	RAATTY	2 cut(s)	934, 1186
Asp700I	GAANNNNTTC	2 cut(s)	252, 705
AspA2I	CCTAGG	1 cut(s)	623
AspS9I	GGNCC	4 cut(s)	616, 627, 677, 958
AsuHPI	GGTGA	6 cut(s)	139, 217, 329, 813, 836, 974
AvaI	CYCGRG	2 cut(s)	282, 962
AvaII	GGWCC	2 cut(s)	677, 958
AvrII	CCTAGG	1 cut(s)	623
BaeI	ACNNNNGTAYC	2 cut(s)	1131, 1164
BalI	TGGCCA	1 cut(s)	469
BbsI	GAAGAC	2 cut(s)	754, 1167
Bbv12I	GWGCWC	1 cut(s)	1113
BbvI	GCAGC	4 cut(s)	175, 877, 1036, 1075
BccI	CCATC	6 cut(s)	196, 346, 569, 607, 641, 688
BciT130I	CCWGG	2 cut(s)	47, 815
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	3 cut(s)	350, 384, 827
BfaI	CTAG	4 cut(s)	137, 159, 275, 624
BfmI	CTRYAG	3 cut(s)	216, 939, 1050
BfuAI	ACCTGC	1 cut(s)	832
BisI	GCNGC	4 cut(s)	164, 891, 1050, 1089
BlnI	CCTAGG	1 cut(s)	623
BlsI	GCNGC	4 cut(s)	165, 892, 1051, 1090
Bme1390I	CCNGG	2 cut(s)	47, 815
Bme18I	GGWCC	2 cut(s)	677, 958
BmeRI	GACNNNNNGTC	1 cut(s)	840
BmeT110I	CYCGRG	2 cut(s)	282, 962
BmgT120I	GGNCC	4 cut(s)	616, 627, 677, 958
BmiI	GGNNCC	4 cut(s)	44, 51, 618, 629
BmrFI	CCNGG	2 cut(s)	47, 815
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	5 cut(s)	135, 226, 259, 827, 1053
BmuI	ACTGGG	1 cut(s)	356
BpiI	GAAGAC	2 cut(s)	754, 1167
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	3 cut(s)	339, 623, 813
Bsc4I	CCNNNNNNNGG	5 cut(s)	202, 563, 624, 1019, 1171
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	2 cut(s)	741, 936
Bse8I	GATNNNNATC	1 cut(s)	76
BseBI	CCWGG	2 cut(s)	47, 815
BseDI	CCNNGG	3 cut(s)	339, 623, 813
BseGI	GGATG	2 cut(s)	357, 580
BseJI	GATNNNNATC	1 cut(s)	76
BseLI	CCNNNNNNNGG	5 cut(s)	202, 563, 624, 1019, 1171
BseMI	GCAATG	2 cut(s)	741, 936
BseMII	CTCAG	2 cut(s)	212, 510
BseNI	ACTGG	1 cut(s)	351
BseXI	GCAGC	4 cut(s)	175, 877, 1036, 1075
BshFI	GGCC	3 cut(s)	469, 617, 628
BsiHKAI	GWGCWC	1 cut(s)	1113
BsiHKCI	CYCGRG	2 cut(s)	282, 962
BslI	CCNNNNNNNGG	5 cut(s)	202, 563, 624, 1019, 1171
BsmAI	GTCTC	3 cut(s)	350, 384, 827
BsmBI	CGTCTC	1 cut(s)	350
BsmI	GAATGC	3 cut(s)	252, 367, 518
BsnI	GGCC	3 cut(s)	469, 617, 628
BsoBI	CYCGRG	2 cut(s)	282, 962
Bsp1286I	GDGCHC	1 cut(s)	1113
Bsp143I	GATC	4 cut(s)	66, 430, 760, 809
BspANI	GGCC	3 cut(s)	469, 617, 628
BspCNI	CTCAG	2 cut(s)	211, 511
BspHI	TCATGA	2 cut(s)	27, 55
BspLI	GGNNCC	4 cut(s)	44, 51, 618, 629
BspMAI	CTGCAG	3 cut(s)	220, 943, 1054
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	3 cut(s)	425, 768, 804
BsrDI	GCAATG	2 cut(s)	741, 936
BsrI	ACTGG	1 cut(s)	351
BssECI	CCNNGG	3 cut(s)	339, 623, 813
BssMI	GATC	4 cut(s)	66, 430, 760, 809
BssT1I	CCWWGG	2 cut(s)	339, 623
Bst2UI	CCWGG	2 cut(s)	47, 815
Bst4CI	ACNGT	5 cut(s)	292, 584, 753, 974, 1144
Bst6I	CTCTTC	1 cut(s)	1207
BstAPI	GCANNNNNTGC	1 cut(s)	824
BstDEI	CTNAG	2 cut(s)	198, 519
BstF5I	GGATG	2 cut(s)	357, 580
BstKTI	GATC	4 cut(s)	69, 433, 763, 812
BstMAI	GTCTC	3 cut(s)	350, 384, 827
BstMBI	GATC	4 cut(s)	66, 430, 760, 809
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 371, 824
BstNI	CCWGG	2 cut(s)	47, 815
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	45, 813
BstSFI	CTRYAG	3 cut(s)	216, 939, 1050
BstV1I	GCAGC	4 cut(s)	175, 877, 1036, 1075
BstV2I	GAAGAC	2 cut(s)	754, 1167
BstX2I	RGATCY	3 cut(s)	430, 760, 809
BstXI	CCANNNNNNTGG	1 cut(s)	346
BstYI	RGATCY	3 cut(s)	430, 760, 809
BsuRI	GGCC	3 cut(s)	469, 617, 628
BtgZI	GCGATG	1 cut(s)	1030
BtsCI	GGATG	2 cut(s)	357, 580
BtsI	GCAGTG	2 cut(s)	213, 1193
BtsIMutI	CAGTG	5 cut(s)	69, 213, 297, 344, 1193
BveI	ACCTGC	1 cut(s)	832
CciI	TCATGA	2 cut(s)	27, 55
Cfr13I	GGNCC	4 cut(s)	616, 627, 677, 958
CseI	GACGC	1 cut(s)	120
DdeI	CTNAG	2 cut(s)	198, 519
DpnI	GATC	4 cut(s)	68, 432, 762, 811
DpnII	GATC	4 cut(s)	66, 430, 760, 809
DraIII	CACNNNGTG	1 cut(s)	988
DriI	GACNNNNNGTC	1 cut(s)	840
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	1207
Eam1105I	GACNNNNNGTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	1207
Eco130I	CCWWGG	2 cut(s)	339, 623
Eco47I	GGWCC	2 cut(s)	677, 958
Eco57I	CTGAAG	3 cut(s)	136, 879, 897
Eco88I	CYCGRG	2 cut(s)	282, 962
EcoO109I	RGGNCCY	2 cut(s)	627, 958
EcoRI	GAATTC	1 cut(s)	934
EcoRII	CCWGG	2 cut(s)	45, 813
EcoT14I	CCWWGG	2 cut(s)	339, 623
EcoT22I	ATGCAT	1 cut(s)	330
ErhI	CCWWGG	2 cut(s)	339, 623
Esp3I	CGTCTC	1 cut(s)	350
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 781, 813
FauNDI	CATATG	2 cut(s)	490, 502
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	4 cut(s)	164, 891, 1050, 1089
FokI	GGATG	2 cut(s)	364, 587
Fsp4HI	GCNGC	4 cut(s)	164, 891, 1050, 1089
FspBI	CTAG	4 cut(s)	137, 159, 275, 624
GluI	GCNGC	4 cut(s)	164, 891, 1050, 1089
HaeIII	GGCC	3 cut(s)	469, 617, 628
HgaI	GACGC	1 cut(s)	120
HphI	GGTGA	6 cut(s)	139, 217, 329, 813, 836, 974
Hpy166II	GTNNAC	3 cut(s)	773, 1153, 1246
Hpy188III	TCNNGA	4 cut(s)	28, 56, 807, 873
Hpy8I	GTNNAC	3 cut(s)	773, 1153, 1246
HpyAV	CCTTC	6 cut(s)	160, 242, 872, 1125, 1266, 1272
HpyCH4III	ACNGT	5 cut(s)	292, 584, 753, 974, 1144
HpyCH4IV	ACGT	2 cut(s)	1242, 1267
HpyCH4V	TGCA	9 cut(s)	218, 239, 328, 506, 635, 734, 929, 941, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 371, 824
HpyF3I	CTNAG	2 cut(s)	198, 519
HpySE526I	ACGT	2 cut(s)	1242, 1267
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	66, 430, 760, 809
LmnI	GCTCC	6 cut(s)	49, 227, 390, 887, 1015, 1116
Lsp1109I	GCAGC	4 cut(s)	175, 877, 1036, 1075
LweI	GCATC	5 cut(s)	135, 226, 259, 827, 1053
MaeI	CTAG	4 cut(s)	137, 159, 275, 624
MaeII	ACGT	2 cut(s)	1242, 1267
MaeIII	GTNAC	7 cut(s)	145, 317, 535, 578, 753, 842, 980
MalI	GATC	4 cut(s)	68, 432, 762, 811
MboI	GATC	4 cut(s)	66, 430, 760, 809
MflI	RGATCY	3 cut(s)	430, 760, 809
MhlI	GDGCHC	1 cut(s)	1113
MlsI	TGGCCA	1 cut(s)	469
MluCI	AATT	5 cut(s)	558, 714, 934, 1099, 1186
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	2 cut(s)	386, 611
MmeI	TCCRAC	1 cut(s)	205
Mox20I	TGGCCA	1 cut(s)	469
Mph1103I	ATGCAT	1 cut(s)	330
MroXI	GAANNNNTTC	2 cut(s)	252, 705
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	1 cut(s)	1130
Msp20I	TGGCCA	1 cut(s)	469
MspR9I	CCNGG	2 cut(s)	47, 815
Mva1269I	GAATGC	3 cut(s)	252, 367, 518
MvaI	CCWGG	2 cut(s)	47, 815
MwoI	GCNNNNNNNGC	3 cut(s)	236, 371, 824
NdeI	CATATG	2 cut(s)	490, 502
NdeII	GATC	4 cut(s)	66, 430, 760, 809
NlaIV	GGNNCC	4 cut(s)	44, 51, 618, 629
NmuCI	GTSAC	5 cut(s)	145, 317, 753, 842, 980
NsiI	ATGCAT	1 cut(s)	330
NspI	RCATGY	1 cut(s)	447
PaeR7I	CTCGAG	1 cut(s)	962
PagI	TCATGA	2 cut(s)	27, 55
PaqCI	CACCTGC	1 cut(s)	832
PciI	ACATGT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	1 cut(s)	960
PctI	GAATGC	3 cut(s)	252, 367, 518
PdmI	GAANNNNTTC	2 cut(s)	252, 705
PfeI	GAWTC	8 cut(s)	59, 77, 296, 497, 706, 857, 1121, 1175
PflMI	CCANNNNNTGG	2 cut(s)	563, 1019
PkrI	GCNGC	4 cut(s)	165, 892, 1051, 1090
PleI	GAGTC	2 cut(s)	385, 610
PpsI	GAGTC	2 cut(s)	385, 610
PpuMI	RGGWCCY	1 cut(s)	958
PscI	ACATGT	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	2 cut(s)	45, 813
PspGI	CCWGG	2 cut(s)	45, 813
PspN4I	GGNNCC	4 cut(s)	44, 51, 618, 629
PspPI	GGNCC	4 cut(s)	616, 627, 677, 958
PspPPI	RGGWCCY	1 cut(s)	958
PspXI	VCTCGAGB	1 cut(s)	962
PstI	CTGCAG	3 cut(s)	220, 943, 1054
PsuI	RGATCY	3 cut(s)	430, 760, 809
SaqAI	TTAA	1 cut(s)	1130
SatI	GCNGC	4 cut(s)	164, 891, 1050, 1089
Sau3AI	GATC	4 cut(s)	66, 430, 760, 809
Sau96I	GGNCC	4 cut(s)	616, 627, 677, 958
SchI	GAGTC	2 cut(s)	386, 611
ScrFI	CCNGG	2 cut(s)	47, 815
SduI	GDGCHC	1 cut(s)	1113
SfaNI	GCATC	5 cut(s)	135, 226, 259, 827, 1053
SfcI	CTRYAG	3 cut(s)	216, 939, 1050
Sfr274I	CTCGAG	1 cut(s)	962
SinI	GGWCC	2 cut(s)	677, 958
SlaI	CTCGAG	1 cut(s)	962
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	5 cut(s)	558, 714, 934, 1099, 1186
SspMI	CTAG	4 cut(s)	137, 159, 275, 624
StyD4I	CCNGG	2 cut(s)	45, 813
StyI	CCWWGG	2 cut(s)	339, 623
TaaI	ACNGT	5 cut(s)	292, 584, 753, 974, 1144
TaiI	ACGT	2 cut(s)	1245, 1270
TaqI	TCGA	3 cut(s)	673, 954, 963
TasI	AATT	5 cut(s)	558, 714, 934, 1099, 1186
TfiI	GAWTC	8 cut(s)	59, 77, 296, 497, 706, 857, 1121, 1175
Tru1I	TTAA	1 cut(s)	1130
Tru9I	TTAA	1 cut(s)	1130
TscAI	CASTG	5 cut(s)	69, 220, 297, 351, 1200
TseFI	GTSAC	5 cut(s)	145, 317, 753, 842, 980
TseI	GCWGC	4 cut(s)	163, 890, 1049, 1088
Tsp45I	GTSAC	5 cut(s)	145, 317, 753, 842, 980
TspDTI	ATGAA	4 cut(s)	261, 489, 947, 1248
TspGWI	ACGGA	1 cut(s)	1187
TspRI	CASTG	5 cut(s)	69, 220, 297, 351, 1200
Van91I	CCANNNNNTGG	2 cut(s)	563, 1019
VpaK11BI	GGWCC	2 cut(s)	677, 958
XapI	RAATTY	2 cut(s)	934, 1186
XceI	RCATGY	1 cut(s)	447
XhoI	CTCGAG	1 cut(s)	962
XmaJI	CCTAGG	1 cut(s)	623
XmnI	GAANNNNTTC	2 cut(s)	252, 705
XspI	CTAG	4 cut(s)	137, 159, 275, 624
Zsp2I	ATGCAT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.