Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007795

Physical Location & Seq

Genomic Coordinates Forward (+)

764812 .. 767144

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g00150.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAACATCACTCCACCACCTTCTCAACAACACATTCACACTGCGGTTCCTGATGATGCCGCCACAGAAAGAGAGACTGCAAAAACCAACATACGTGAGAGTACTCATTTGATAGCTAAGGCACTCGCAATGGATACAAATCCTAAGAGGGTAGAGCCTCGTATTGGGAACTTCTTCGACTGTCATATATGCTTTGACTTGGCCACAGATCCTATATTGACATGCTGCGGTCATTTGTTTTGTTGGCCTTGCTTCTATGACTTGTCTTATGCCGATTCAAATGCAAAGGAATGTCCTGTCTGCAAAGGCGAAGTTACTGATGCAAGTATTATTCCAGTTTACGGACATGGTGATGGTAACACTTCTCAAAACTCAAAGGAATCTGTTTCCCTGGCCCCTCCTAGGCCCCGTGCAGCCAGGATTGAGGGTGTGAGGCAGCAGCTTATTAGGCGAGGGCCATCTTCTGTAATTGAACACAGGATTCAGCTACTTAGCAACTTAATGGGGGAGAGAAGACAGACACAGGATCTTTTTGGTTCACATATCAATGCAATAGTTGATAGAACTAGTATCTTGCCTAGCCGGTCTACATCACCTGCCACAGAAACATCAAGCACCCAGCACCATGATTCACTTCAAATTTCAAGATTATTGATGCAAAGAGCTGATTCAGTTTCTTCACTTTCATCAGCACTGAATACTGCAATGGATTCTGCAGAAAGATTAGTGGAGGATCTCGAGGCATATAGTAATGATCCCCGCATGAGAAGAAACCGCCAGCATTCTCCAAGTAATGATAATGGAGTTACATCTTCAAATATTGCTACAATTATACAACCAGAAAACCCGACATCTGATACGGCCACCGAAATCAATTCGGATGTGCTTCCAGCTGCTTCCGTTTTAAGGAATTTTCCTGCCAGTGCGGGCTTGGAGGACCAGACAGTGAATTCAGAAATAAATTCAACAGTCCGATCTTCATCTTCCAGGAGAAGAAGGTTCCAGAGAGGCTCTGGTGTGATTATTAGTCAGCATTCATCTGAACCTAGAAGGAGAAGGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006515 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0030163 GO:0031984 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036503 GO:0036513 GO:0042175 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0051788 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_5

Protein Analysis

356

Amino Acids

39.18

Weight (kDa)

7.19

Isoelectric Point (pI)

71.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	124 - 170	3.2e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2	PF13923	124 - 164	7.9e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	124 - 162	1.9e-06	RING-type zinc-finger
zf-RING_5	PF14634	124 - 165	1.5e-06	zinc-RING finger domain
zf-C3HC4	PF00097	124 - 164	7.8e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44410
fragaria_vesca	FvH4_7g00150 FvH4_7g00150 FvH4_7g00150
malus_domestica	MD02G1318800.v1.1 MD07G1002400.v1.1
prunus_persica	Prupe.2G003800_v2.0.a1 Prupe.2G003800_v2.0.a1 Prupe.2G003800_v2.0.a1
pyrus_communis	pycom02g26710 pycom07g00240
rosa_chinensis	RchiOBHm_Chr1g0313401
rosa_laevigata	RLG00000030800
rosa_multiflora	Rmu_sc0000035.1_g000030 Rmu_sc0000035.1_g000044
rosa_roxburghii	Rroxscaffold_4G00332220
rosa_rugosa	RorugPtG0004700.1
rosa_samantha	Rh1AG003200 Rh1BG000200 Rh1CG001400 Rh1CG007600 Rh1DG002700 Rh1DG003100
rosa_wichuraiana	Rw1G000200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	604
Acc36I	ACCTGC	1 cut(s)	604
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	6 cut(s)	44, 60, 228, 760, 775, 926
AclWI	GGATC	4 cut(s)	203, 534, 741, 749
AcoI	YGGCCR	2 cut(s)	201, 861
AcsI	RAATTY	4 cut(s)	639, 910, 949, 961
AfaI	GTAC	1 cut(s)	103
AfiI	CCNNNNNNNGG	4 cut(s)	164, 341, 402, 906
AgsI	TTSAA	6 cut(s)	279, 473, 638, 645, 816, 966
AhlI	ACTAGT	1 cut(s)	566
AjnI	CCWGG	3 cut(s)	390, 416, 986
AluBI	AGCT	5 cut(s)	116, 442, 487, 665, 893
AluI	AGCT	5 cut(s)	116, 442, 487, 665, 893
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	4 cut(s)	203, 534, 741, 749
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	6 cut(s)	201, 245, 393, 404, 455, 861
ApeKI	GCWGC	5 cut(s)	225, 413, 436, 439, 893
ApoI	RAATTY	4 cut(s)	639, 910, 949, 961
Asp700I	GAANNNNTTC	1 cut(s)	173
AspA2I	CCTAGG	1 cut(s)	401
AspS9I	GGNCC	4 cut(s)	394, 405, 455, 937
AsuHPI	GGTGA	2 cut(s)	362, 585
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	937
AvrII	CCTAGG	1 cut(s)	401
BalI	TGGCCA	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	520
BbvI	GCAGC	5 cut(s)	212, 425, 448, 451, 880
BccI	CCATC	2 cut(s)	347, 466
BceAI	ACGGC	1 cut(s)	876
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	3 cut(s)	392, 418, 988
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	68
BcuI	ACTAGT	1 cut(s)	566
BfaI	CTAG	4 cut(s)	402, 567, 579, 1047
BfmI	CTRYAG	1 cut(s)	714
BfuAI	ACCTGC	1 cut(s)	604
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	6 cut(s)	60, 226, 414, 437, 440, 894
BlnI	CCTAGG	1 cut(s)	401
BlsI	GCNGC	6 cut(s)	61, 227, 415, 438, 441, 895
BmcAI	AGTACT	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	392, 418, 988
Bme18I	GGWCC	1 cut(s)	937
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	4 cut(s)	394, 405, 455, 937
BmiI	GGNNCC	4 cut(s)	48, 396, 407, 1001
BmrFI	CCNGG	3 cut(s)	392, 418, 988
BmsI	GCATC	3 cut(s)	46, 310, 645
BpiI	GAAGAC	1 cut(s)	520
Bpu10I	CCTNAGC	1 cut(s)	117
BsaAI	YACGTR	1 cut(s)	95
BsaBI	GATNNNNATC	2 cut(s)	138, 979
BsaJI	CCNNGG	2 cut(s)	390, 401
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 341, 402, 906
Bse118I	RCCGGY	1 cut(s)	582
Bse1I	ACTGG	2 cut(s)	335, 921
Bse3DI	GCAATG	2 cut(s)	135, 711
Bse8I	GATNNNNATC	2 cut(s)	138, 979
BseBI	CCWGG	3 cut(s)	392, 418, 988
BseDI	CCNNGG	2 cut(s)	390, 401
BseGI	GGATG	1 cut(s)	886
BseJI	GATNNNNATC	2 cut(s)	138, 979
BseLI	CCNNNNNNNGG	4 cut(s)	164, 341, 402, 906
BseMI	GCAATG	2 cut(s)	135, 711
BseNI	ACTGG	2 cut(s)	335, 921
BseXI	GCAGC	5 cut(s)	212, 425, 448, 451, 880
BseYI	CCCAGC	1 cut(s)	618
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	6 cut(s)	203, 247, 395, 406, 457, 863
BsiHKCI	CYCGRG	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	583
BslI	CCNNNNNNNGG	4 cut(s)	164, 341, 402, 906
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	2 cut(s)	781, 1033
BsnI	GGCC	6 cut(s)	203, 247, 395, 406, 457, 863
BsoBI	CYCGRG	1 cut(s)	737
Bsp143I	GATC	5 cut(s)	208, 526, 733, 754, 974
BspACI	CCGC	6 cut(s)	44, 60, 228, 760, 775, 926
BspANI	GGCC	6 cut(s)	203, 247, 395, 406, 457, 863
BspLI	GGNNCC	4 cut(s)	48, 396, 407, 1001
BspMAI	CTGCAG	1 cut(s)	718
BspMI	ACCTGC	1 cut(s)	604
BspPI	GGATC	4 cut(s)	203, 534, 741, 749
BsrDI	GCAATG	2 cut(s)	135, 711
BsrFI	RCCGGY	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	335, 921
BssAI	RCCGGY	1 cut(s)	582
BssECI	CCNNGG	2 cut(s)	390, 401
BssMI	GATC	5 cut(s)	208, 526, 733, 754, 974
BssT1I	CCWWGG	1 cut(s)	401
Bst2UI	CCWGG	3 cut(s)	392, 418, 988
Bst4CI	ACNGT	3 cut(s)	182, 946, 970
BstBAI	YACGTR	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	779, 928
BstDEI	CTNAG	3 cut(s)	117, 144, 491
BstF5I	GGATG	1 cut(s)	886
BstKTI	GATC	5 cut(s)	211, 529, 736, 757, 977
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	5 cut(s)	208, 526, 733, 754, 974
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNI	CCWGG	3 cut(s)	392, 418, 988
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	3 cut(s)	390, 416, 986
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	5 cut(s)	212, 425, 448, 451, 880
BstV2I	GAAGAC	1 cut(s)	520
BstX2I	RGATCY	3 cut(s)	208, 526, 733
BstYI	RGATCY	3 cut(s)	208, 526, 733
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	6 cut(s)	203, 247, 395, 406, 457, 863
BtsCI	GGATG	1 cut(s)	886
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	4 cut(s)	39, 692, 928, 951
BveI	ACCTGC	1 cut(s)	604
Cac8I	GCNNGC	2 cut(s)	779, 928
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	4 cut(s)	394, 405, 455, 937
Csp6I	GTAC	1 cut(s)	102
CviAII	CATG	4 cut(s)	222, 347, 626, 763
CviQI	GTAC	1 cut(s)	102
DdeI	CTNAG	3 cut(s)	117, 144, 491
DpnI	GATC	5 cut(s)	210, 528, 735, 756, 976
DpnII	GATC	5 cut(s)	208, 526, 733, 754, 974
EaeI	YGGCCR	2 cut(s)	201, 861
Eco130I	CCWWGG	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	937
Eco88I	CYCGRG	1 cut(s)	737
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRI	GAATTC	1 cut(s)	949
EcoRII	CCWGG	3 cut(s)	390, 416, 986
EcoT14I	CCWWGG	1 cut(s)	401
ErhI	CCWWGG	1 cut(s)	401
FaeI	CATG	4 cut(s)	225, 350, 629, 766
FatI	CATG	4 cut(s)	221, 346, 625, 762
FauI	CCCGC	2 cut(s)	767, 919
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	6 cut(s)	60, 226, 414, 437, 440, 894
FokI	GGATG	1 cut(s)	893
Fsp4HI	GCNGC	6 cut(s)	60, 226, 414, 437, 440, 894
FspBI	CTAG	4 cut(s)	402, 567, 579, 1047
GluI	GCNGC	6 cut(s)	60, 226, 414, 437, 440, 894
GsaI	CCCAGC	1 cut(s)	622
HaeIII	GGCC	6 cut(s)	203, 247, 395, 406, 457, 863
HapII	CCGG	1 cut(s)	583
Hin1II	CATG	4 cut(s)	225, 350, 629, 766
HinfI	GANTC	6 cut(s)	275, 380, 481, 629, 668, 710
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	2 cut(s)	362, 585
Hpy166II	GTNNAC	3 cut(s)	340, 539, 588
Hpy188I	TCNGA	5 cut(s)	856, 880, 955, 974, 1042
Hpy188III	TCNNGA	4 cut(s)	50, 645, 737, 1003
Hpy8I	GTNNAC	3 cut(s)	340, 539, 588
HpyAV	CCTTC	4 cut(s)	30, 990, 1044, 1050
HpyCH4III	ACNGT	3 cut(s)	182, 946, 970
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	9 cut(s)	80, 284, 303, 323, 413, 551, 658, 704, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpyF3I	CTNAG	3 cut(s)	117, 144, 491
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	4 cut(s)	225, 350, 629, 766
Kzo9I	GATC	5 cut(s)	208, 526, 733, 754, 974
Lsp1109I	GCAGC	5 cut(s)	212, 425, 448, 451, 880
LweI	GCATC	3 cut(s)	46, 310, 645
MaeI	CTAG	4 cut(s)	402, 567, 579, 1047
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	3 cut(s)	313, 356, 805
MalI	GATC	5 cut(s)	210, 528, 735, 756, 976
MboI	GATC	5 cut(s)	208, 526, 733, 754, 974
MboII	GAAGA	9 cut(s)	166, 453, 525, 669, 780, 804, 969, 975, 1005
MflI	RGATCY	3 cut(s)	208, 526, 733
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	7 cut(s)	468, 639, 828, 874, 910, 949, 961
MluNI	TGGCCA	1 cut(s)	203
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	2 cut(s)	500, 905
MslI	CAYNNNNRTG	2 cut(s)	351, 546
Msp20I	TGGCCA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	893
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	3 cut(s)	392, 418, 988
Mva1269I	GAATGC	2 cut(s)	781, 1033
MvaI	CCWGG	3 cut(s)	392, 418, 988
MwoI	GCNNNNNNNGC	1 cut(s)	448
NdeII	GATC	5 cut(s)	208, 526, 733, 754, 974
NlaIII	CATG	4 cut(s)	225, 350, 629, 766
NlaIV	GGNNCC	4 cut(s)	48, 396, 407, 1001
NspI	RCATGY	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	737
PaqCI	CACCTGC	1 cut(s)	604
PctI	GAATGC	2 cut(s)	781, 1033
PdmI	GAANNNNTTC	1 cut(s)	173
PfeI	GAWTC	6 cut(s)	275, 380, 481, 629, 668, 710
PfoI	TCCNGGA	1 cut(s)	986
PkrI	GCNGC	6 cut(s)	61, 227, 415, 438, 441, 895
Ppu21I	YACGTR	1 cut(s)	95
Psp6I	CCWGG	3 cut(s)	390, 416, 986
PspFI	CCCAGC	1 cut(s)	618
PspGI	CCWGG	3 cut(s)	390, 416, 986
PspN4I	GGNNCC	4 cut(s)	48, 396, 407, 1001
PspPI	GGNCC	4 cut(s)	394, 405, 455, 937
PstI	CTGCAG	1 cut(s)	718
PsuI	RGATCY	3 cut(s)	208, 526, 733
PvuII	CAGCTG	1 cut(s)	893
RsaI	GTAC	1 cut(s)	103
RsaNI	GTAC	1 cut(s)	102
RseI	CAYNNNNRTG	2 cut(s)	351, 546
SaqAI	TTAA	2 cut(s)	500, 905
SatI	GCNGC	6 cut(s)	60, 226, 414, 437, 440, 894
Sau3AI	GATC	5 cut(s)	208, 526, 733, 754, 974
Sau96I	GGNCC	4 cut(s)	394, 405, 455, 937
ScaI	AGTACT	1 cut(s)	103
ScrFI	CCNGG	3 cut(s)	392, 418, 988
SfaNI	GCATC	3 cut(s)	46, 310, 645
SfcI	CTRYAG	1 cut(s)	714
Sfr274I	CTCGAG	1 cut(s)	737
SinI	GGWCC	1 cut(s)	937
SlaI	CTCGAG	1 cut(s)	737
SmiMI	CAYNNNNRTG	2 cut(s)	351, 546
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
SpeI	ACTAGT	1 cut(s)	566
Sse9I	AATT	7 cut(s)	468, 639, 828, 874, 910, 949, 961
SsiI	CCGC	6 cut(s)	44, 60, 228, 760, 775, 926
SspI	AATATT	1 cut(s)	820
SspMI	CTAG	4 cut(s)	402, 567, 579, 1047
StyD4I	CCNGG	3 cut(s)	390, 416, 986
StyI	CCWWGG	1 cut(s)	401
TaaI	ACNGT	3 cut(s)	182, 946, 970
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	177, 738
TasI	AATT	7 cut(s)	468, 639, 828, 874, 910, 949, 961
TatI	WGTACW	1 cut(s)	101
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	6 cut(s)	275, 380, 481, 629, 668, 710
Tru1I	TTAA	2 cut(s)	500, 905
Tru9I	TTAA	2 cut(s)	500, 905
TscAI	CASTG	4 cut(s)	46, 699, 928, 951
TseI	GCWGC	5 cut(s)	225, 413, 436, 439, 893
TspDTI	ATGAA	4 cut(s)	17, 675, 969, 1026
TspGWI	ACGGA	2 cut(s)	357, 889
TspRI	CASTG	4 cut(s)	46, 699, 928, 951
VpaK11BI	GGWCC	1 cut(s)	937
XapI	RAATTY	4 cut(s)	639, 910, 949, 961
XceI	RCATGY	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	2 cut(s)	928, 1010
XhoI	CTCGAG	1 cut(s)	737
XmaJI	CCTAGG	1 cut(s)	401
XmiI	GTMKAC	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	173
XspI	CTAG	4 cut(s)	402, 567, 579, 1047
ZrmI	AGTACT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.