pycom07g00240

Prokaryotic RING finger family 4

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
254366 .. 255421
1056 bp
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UTR
Exon/CDS
Intron
pycom07g00240.1

Sequence Viewer

Length: 1056 bp
ATGGAGATGGGGAGTAATATAAGGGAAGAAATCATGATTTTAGATTTAAACCAAGAGCCTTTAGACCAACTGCCTGATTCGGTGATCGGATTAGATAACATACTCGATGAGCTTGAAACTGCCCATGGACGCATTGAAGAACGTATCAGACAACTAGAAGCAGTCACTTCCAGGGCTAGGCAGCGTCAGAGGTGGCGACAAGCTCAAATTTCCCCTCAAATTGTGAATATCACTGCTGGTGTTGTTGCTTCTGATACACAAAACGAACACAGTCAGAATGAGGACGATGCTCCAGCTGCCCGAGAAACAGTGGAATCTGGCAAAACCAACAGAGGTGATAACATGCATTTGATAGCCAAGGCACTGGGGATGGATACAAATGTGAAAAAGGCAGAGCCTCATACTGGGAGCTTTTTTGATTGTAATATATGCTTGGATATGGCAAGAGATCCTATGTTGACATGTTGCGGTCATTTGTTTTGTTGGCCATGCTTCTATCAGTTGTCGTATGTGGATTCAAATGCAAAGGAATGCCCCGTGTGTAAAGGAGAAGTAACTGATTCAAGTCTGATTCCAATTTACGGGAATGGGGATGGTAAATGTTTTCACAAGTCAAACGAGTCTGTTTCAAAGGCCCCTCCTAGGCCCCCTGCACACAGGATTGAGGGTTTGAGGCAGCAGCTTATTAGGCGGGGCCCATCTTCTGCATTGATTGAAGAAAGGATTCAGCAACTTAGCAACATAGTTGGTTCAATGGGGGAGAGAAGACGGTCACGGGATAGTTTCGGTGCACAAGTCATGGCTGAAAGAACTAGTTTCGTGCCCAGCCAGGACCAGACATCACAGGCATCACCTGCCACTGAGACAAGAAACCAACACCAGCATGATTCCCTTCAAGTTTCAAGATTATTACTACAAGGGGCCGCTTCAGTATCTTCCCTTTCGTCAGCGTTGAATACTGCATTGGATTCAGCAGAAAGATTAGTCGAGGACCTCGAGGAATATAGTAATGGTCACCATGTTAGAAGAAACGATCGATCAGTCTTTACATATTGA

Protein Analysis

352

Amino Acids

39.11

Weight (kDa)

5.52

Isoelectric Point (pI)

63.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_5 PF14634 140 - 182 1.8e-08 zinc-RING finger domain
zf-C3HC4_3 PF13920 141 - 187 1.4e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 141 - 181 1.7e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 141 - 181 3.9e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 141 - 179 3.3e-07 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 862
AbsI CCTCGAGG 1 cut(s) 995
Acc36I ACCTGC 1 cut(s) 862
AciI CCGC 3 cut(s) 468, 691, 924
AclWI GGATC 1 cut(s) 443
AcoI YGGCCR 1 cut(s) 485
AcsI RAATTY 1 cut(s) 207
AcuI CTGAAG 1 cut(s) 912
AfiI CCNNNNNNNGG 4 cut(s) 177, 404, 581, 642
AflIII ACRYGT 1 cut(s) 461
AhlI ACTAGT 1 cut(s) 812
AjnI CCWGG 2 cut(s) 170, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 947, 979
AluBI AGCT 5 cut(s) 112, 203, 296, 411, 682
AluI AGCT 5 cut(s) 112, 203, 296, 411, 682
Alw21I GWGCWC 1 cut(s) 793
Alw26I GTCTC 1 cut(s) 857
Alw44I GTGCAC 1 cut(s) 789
AlwI GGATC 1 cut(s) 443
Ama87I CYCGRG 2 cut(s) 300, 995
AoxI GGCC 5 cut(s) 485, 633, 644, 694, 921
ApaI GGGCCC 1 cut(s) 698
ApaLI GTGCAC 1 cut(s) 789
ApeKI GCWGC 4 cut(s) 181, 296, 676, 679
ApoI RAATTY 1 cut(s) 207
Asp700I GAANNNNTTC 1 cut(s) 723
AspA2I CCTAGG 1 cut(s) 641
AspS9I GGNCC 7 cut(s) 634, 645, 694, 695, 832, 921, 991
AsuHPI GGTGA 4 cut(s) 94, 347, 843, 1007
AvaI CYCGRG 2 cut(s) 300, 995
AvaII GGWCC 2 cut(s) 832, 991
AvrII CCTAGG 1 cut(s) 641
BaeGI GKGCMC 3 cut(s) 698, 793, 825
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BalI TGGCCA 1 cut(s) 487
BanII GRGCYC 1 cut(s) 698
BbsI GAAGAC 1 cut(s) 772
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 4 cut(s) 193, 283, 688, 691
BccI CCATC 3 cut(s) 364, 587, 706
BciT130I CCWGG 2 cut(s) 172, 830
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 857
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 4 cut(s) 155, 177, 642, 813
BfuAI ACCTGC 1 cut(s) 862
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 5 cut(s) 182, 297, 677, 680, 924
BlnI CCTAGG 1 cut(s) 641
BlsI GCNGC 5 cut(s) 183, 298, 678, 681, 925
Bme1390I CCNGG 2 cut(s) 172, 830
Bme18I GGWCC 2 cut(s) 832, 991
BmeT110I CYCGRG 2 cut(s) 300, 995
BmgT120I GGNCC 7 cut(s) 634, 645, 694, 695, 832, 921, 991
BmiI GGNNCC 5 cut(s) 636, 647, 695, 696, 922
BmrFI CCNGG 2 cut(s) 172, 830
BmrI ACTGGG 2 cut(s) 374, 414
BmsI GCATC 2 cut(s) 277, 857
BmuI ACTGGG 2 cut(s) 374, 414
BpiI GAAGAC 1 cut(s) 772
BpmI CTGGAG 1 cut(s) 276
Bsa29I ATCGAT 1 cut(s) 1036
BsaJI CCNNGG 4 cut(s) 124, 171, 357, 641
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 404, 581, 642
Bse1I ACTGG 2 cut(s) 369, 409
BseBI CCWGG 2 cut(s) 172, 830
BseCI ATCGAT 1 cut(s) 1036
BseDI CCNNGG 4 cut(s) 124, 171, 357, 641
BseGI GGATG 2 cut(s) 375, 598
BseLI CCNNNNNNNGG 4 cut(s) 177, 404, 581, 642
BseMII CTCAG 1 cut(s) 852
BseNI ACTGG 2 cut(s) 369, 409
BseSI GKGCMC 3 cut(s) 698, 793, 825
BseXI GCAGC 4 cut(s) 193, 283, 688, 691
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 1036
BshFI GGCC 5 cut(s) 487, 635, 646, 696, 923
BshVI ATCGAT 1 cut(s) 1036
BsiEI CGRYCG 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 793
BsiHKCI CYCGRG 2 cut(s) 300, 995
BslI CCNNNNNNNGG 4 cut(s) 177, 404, 581, 642
BsmAI GTCTC 1 cut(s) 857
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 5 cut(s) 487, 635, 646, 696, 923
BsoBI CYCGRG 2 cut(s) 300, 995
Bsp120I GGGCCC 1 cut(s) 694
Bsp1286I GDGCHC 3 cut(s) 698, 793, 825
Bsp143I GATC 4 cut(s) 84, 448, 1033, 1037
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 3 cut(s) 468, 691, 924
BspANI GGCC 5 cut(s) 487, 635, 646, 696, 923
BspCNI CTCAG 1 cut(s) 853
BspDI ATCGAT 1 cut(s) 1036
BspHI TCATGA 1 cut(s) 33
BspLI GGNNCC 5 cut(s) 636, 647, 695, 696, 922
BspMI ACCTGC 1 cut(s) 862
BspPI GGATC 1 cut(s) 443
BsrI ACTGG 2 cut(s) 369, 409
BssECI CCNNGG 4 cut(s) 124, 171, 357, 641
BssMI GATC 4 cut(s) 84, 448, 1033, 1037
BssT1I CCWWGG 3 cut(s) 124, 357, 641
Bst2UI CCWGG 2 cut(s) 172, 830
Bst4CI ACNGT 3 cut(s) 272, 310, 771
BstAPI GCANNNNNTGC 1 cut(s) 854
BstDEI CTNAG 2 cut(s) 734, 861
BstDSI CCRYGG 1 cut(s) 124
BstEII GGTNACC 1 cut(s) 1013
BstF5I GGATG 2 cut(s) 375, 598
BstKTI GATC 4 cut(s) 87, 451, 1036, 1040
BstMAI GTCTC 1 cut(s) 857
BstMBI GATC 4 cut(s) 84, 448, 1033, 1037
BstMCI CGRYCG 1 cut(s) 1036
BstMWI GCNNNNNNNGC 3 cut(s) 296, 688, 854
BstNI CCWGG 2 cut(s) 172, 830
BstNSI RCATGY 2 cut(s) 346, 465
BstPI GGTNACC 1 cut(s) 1013
BstSCI CCNGG 2 cut(s) 170, 828
BstSLI GKGCMC 3 cut(s) 698, 793, 825
BstV1I GCAGC 4 cut(s) 193, 283, 688, 691
BstV2I GAAGAC 1 cut(s) 772
BstX2I RGATCY 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 364
BstYI RGATCY 1 cut(s) 448
Bsu15I ATCGAT 1 cut(s) 1036
BsuI GTATCC 1 cut(s) 367
BsuRI GGCC 5 cut(s) 487, 635, 646, 696, 923
BsuTUI ATCGAT 1 cut(s) 1036
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 2 cut(s) 375, 598
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 4 cut(s) 231, 315, 362, 858
BveI ACCTGC 1 cut(s) 862
CciI TCATGA 1 cut(s) 33
Cfr13I GGNCC 7 cut(s) 634, 645, 694, 695, 832, 921, 991
ClaI ATCGAT 1 cut(s) 1036
CseI GACGC 2 cut(s) 138, 173
CviAII CATG 8 cut(s) 34, 125, 343, 462, 489, 799, 884, 1019
DdeI CTNAG 2 cut(s) 734, 861
DpnI GATC 4 cut(s) 86, 450, 1035, 1039
DpnII GATC 4 cut(s) 84, 448, 1033, 1037
DraI TTTAAA 1 cut(s) 48
EaeI YGGCCR 1 cut(s) 485
Eco130I CCWWGG 3 cut(s) 124, 357, 641
Eco24I GRGCYC 1 cut(s) 698
Eco47I GGWCC 2 cut(s) 832, 991
Eco57I CTGAAG 1 cut(s) 912
Eco88I CYCGRG 2 cut(s) 300, 995
Eco91I GGTNACC 1 cut(s) 1013
EcoO109I RGGNCCY 4 cut(s) 634, 645, 694, 991
EcoO65I GGTNACC 1 cut(s) 1013
EcoRII CCWGG 2 cut(s) 170, 828
EcoT14I CCWWGG 3 cut(s) 124, 357, 641
EcoT22I ATGCAT 1 cut(s) 348
EcoT38I GRGCYC 1 cut(s) 698
ErhI CCWWGG 3 cut(s) 124, 357, 641
FaeI CATG 8 cut(s) 37, 128, 346, 465, 492, 802, 887, 1022
FatI CATG 8 cut(s) 33, 124, 342, 461, 488, 798, 883, 1018
FauI CCCGC 1 cut(s) 684
Fnu4HI GCNGC 5 cut(s) 182, 297, 677, 680, 924
FokI GGATG 2 cut(s) 382, 605
FriOI GRGCYC 1 cut(s) 698
Fsp4HI GCNGC 5 cut(s) 182, 297, 677, 680, 924
FspBI CTAG 4 cut(s) 155, 177, 642, 813
GluI GCNGC 5 cut(s) 182, 297, 677, 680, 924
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 5 cut(s) 487, 635, 646, 696, 923
HgaI GACGC 2 cut(s) 138, 173
Hin1II CATG 8 cut(s) 37, 128, 346, 465, 492, 802, 887, 1022
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 9 cut(s) 77, 314, 515, 560, 571, 620, 724, 887, 968
HphI GGTGA 4 cut(s) 94, 347, 843, 1007
Hpy166II GTNNAC 2 cut(s) 459, 791
Hpy188I TCNGA 6 cut(s) 89, 149, 189, 253, 276, 570
Hpy188III TCNNGA 2 cut(s) 34, 903
Hpy8I GTNNAC 2 cut(s) 459, 791
HpyAV CCTTC 1 cut(s) 902
HpyCH4III ACNGT 3 cut(s) 272, 310, 771
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 6 cut(s) 346, 524, 653, 707, 791, 962
HpyF10VI GCNNNNNNNGC 3 cut(s) 296, 688, 854
HpyF3I CTNAG 2 cut(s) 734, 861
HpySE526I ACGT 1 cut(s) 142
Hsp92II CATG 8 cut(s) 37, 128, 346, 465, 492, 802, 887, 1022
Kzo9I GATC 4 cut(s) 84, 448, 1033, 1037
LmnI GCTCC 2 cut(s) 295, 408
Lsp1109I GCAGC 4 cut(s) 193, 283, 688, 691
LweI GCATC 2 cut(s) 277, 857
MaeI CTAG 4 cut(s) 155, 177, 642, 813
MaeII ACGT 1 cut(s) 142
MaeIII GTNAC 4 cut(s) 163, 553, 771, 1013
MalI GATC 4 cut(s) 86, 450, 1035, 1039
MboI GATC 4 cut(s) 84, 448, 1033, 1037
MboII GAAGA 7 cut(s) 38, 149, 693, 728, 777, 927, 1038
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 698, 793, 825
MlsI TGGCCA 1 cut(s) 487
MluCI AATT 3 cut(s) 207, 219, 576
MluNI TGGCCA 1 cut(s) 487
MlyI GAGTC 1 cut(s) 629
Mox20I TGGCCA 1 cut(s) 487
Mph1103I ATGCAT 1 cut(s) 348
MroXI GAANNNNTTC 1 cut(s) 723
MscI TGGCCA 1 cut(s) 487
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 882
Msp20I TGGCCA 1 cut(s) 487
MspA1I CMGCKG 1 cut(s) 296
MspR9I CCNGG 2 cut(s) 172, 830
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 2 cut(s) 172, 830
MwoI GCNNNNNNNGC 3 cut(s) 296, 688, 854
NcoI CCATGG 1 cut(s) 124
NdeII GATC 4 cut(s) 84, 448, 1033, 1037
NlaIII CATG 8 cut(s) 37, 128, 346, 465, 492, 802, 887, 1022
NlaIV GGNNCC 5 cut(s) 636, 647, 695, 696, 922
NmuCI GTSAC 3 cut(s) 163, 771, 1013
NsiI ATGCAT 1 cut(s) 348
NspI RCATGY 2 cut(s) 346, 465
PaeR7I CTCGAG 1 cut(s) 995
PagI TCATGA 1 cut(s) 33
PaqCI CACCTGC 1 cut(s) 862
PciI ACATGT 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 993
PctI GAATGC 1 cut(s) 536
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 8 cut(s) 77, 314, 515, 560, 571, 724, 887, 968
PkrI GCNGC 5 cut(s) 183, 298, 678, 681, 925
Ple19I CGATCG 1 cut(s) 1036
PleI GAGTC 1 cut(s) 628
PpsI GAGTC 1 cut(s) 628
PpuMI RGGWCCY 1 cut(s) 991
PscI ACATGT 1 cut(s) 461
Psp5II RGGWCCY 1 cut(s) 991
Psp6I CCWGG 2 cut(s) 170, 828
PspEI GGTNACC 1 cut(s) 1013
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 2 cut(s) 170, 828
PspN4I GGNNCC 5 cut(s) 636, 647, 695, 696, 922
PspOMI GGGCCC 1 cut(s) 694
PspPI GGNCC 7 cut(s) 634, 645, 694, 695, 832, 921, 991
PspPPI RGGWCCY 1 cut(s) 991
PspXI VCTCGAGB 1 cut(s) 995
PsuI RGATCY 1 cut(s) 448
PvuI CGATCG 1 cut(s) 1036
PvuII CAGCTG 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 882
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 5 cut(s) 182, 297, 677, 680, 924
Sau3AI GATC 4 cut(s) 84, 448, 1033, 1037
Sau96I GGNCC 7 cut(s) 634, 645, 694, 695, 832, 921, 991
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 172, 830
SduI GDGCHC 3 cut(s) 698, 793, 825
SfaNI GCATC 2 cut(s) 277, 857
Sfr274I CTCGAG 1 cut(s) 995
SinI GGWCC 2 cut(s) 832, 991
SlaI CTCGAG 1 cut(s) 995
SmiMI CAYNNNNRTG 1 cut(s) 882
SmlI CTYRAG 1 cut(s) 995
SmoI CTYRAG 1 cut(s) 995
SpeI ACTAGT 1 cut(s) 812
Sse9I AATT 3 cut(s) 207, 219, 576
SsiI CCGC 3 cut(s) 468, 691, 924
SspMI CTAG 4 cut(s) 155, 177, 642, 813
StyD4I CCNGG 2 cut(s) 170, 828
StyI CCWWGG 3 cut(s) 124, 357, 641
TaaI ACNGT 3 cut(s) 272, 310, 771
TaiI ACGT 1 cut(s) 145
TaqI TCGA 4 cut(s) 105, 987, 996, 1036
TasI AATT 3 cut(s) 207, 219, 576
TauI GCSGC 1 cut(s) 926
TfiI GAWTC 8 cut(s) 77, 314, 515, 560, 571, 724, 887, 968
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 4 cut(s) 238, 315, 369, 865
TseFI GTSAC 3 cut(s) 163, 771, 1013
TseI GCWGC 4 cut(s) 181, 296, 676, 679
Tsp45I GTSAC 3 cut(s) 163, 771, 1013
TspRI CASTG 4 cut(s) 238, 315, 369, 865
VneI GTGCAC 1 cut(s) 789
VpaK11BI GGWCC 2 cut(s) 832, 991
XapI RAATTY 1 cut(s) 207
XceI RCATGY 2 cut(s) 346, 465
XhoI CTCGAG 1 cut(s) 995
XmaJI CCTAGG 1 cut(s) 641
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 4 cut(s) 155, 177, 642, 813
Zsp2I ATGCAT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.