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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G44760 |
| fragaria_vesca | FvH4_7g10380 |
| malus_domestica | MD07G1109900.v1.1 |
| prunus_persica | Prupe.2G133500_v2.0.a1 |
| pyrus_communis | pycom07g09470 |
| rosa_chinensis | RchiOBHm_Chr1g0348081 |
| rosa_laevigata | RLG00000028692 |
| rosa_multiflora | Rmu_sc0000253.1_g000019 Rmu_sc0002523.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00307250 |
| rosa_rugosa | Rorug01G0192200 |
| rosa_samantha | Rh1AG209900 Rh1BG175500 Rh1CG194300 Rh1DG205300 |
| rosa_wichuraiana | Rw1G017510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 180 |
| AciI | CCGC | 3 cut(s) | 218, 287, 330 |
| AclWI | GGATC | 4 cut(s) | 193, 835, 1135, 1452 |
| AcsI | RAATTY | 3 cut(s) | 362, 965, 1181 |
| AfaI | GTAC | 1 cut(s) | 1217 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 217, 515, 611, 862, 1166 |
| AgsI | TTSAA | 9 cut(s) | 129, 419, 536, 590, 760, 904, 911, 1038, 1145 |
| AjnI | CCWGG | 2 cut(s) | 1192, 1321 |
| AluBI | AGCT | 4 cut(s) | 51, 497, 617, 1232 |
| AluI | AGCT | 4 cut(s) | 51, 497, 617, 1232 |
| Alw26I | GTCTC | 3 cut(s) | 401, 934, 1471 |
| AlwI | GGATC | 4 cut(s) | 193, 835, 1135, 1452 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 629, 919 |
| AoxI | GGCC | 1 cut(s) | 805 |
| ApoI | RAATTY | 3 cut(s) | 362, 965, 1181 |
| AspLEI | GCGC | 1 cut(s) | 181 |
| AspS9I | GGNCC | 1 cut(s) | 842 |
| AsuC2I | CCSGG | 1 cut(s) | 804 |
| AsuHPI | GGTGA | 4 cut(s) | 18, 319, 934, 1208 |
| AsuII | TTCGAA | 1 cut(s) | 1185 |
| AvaII | GGWCC | 1 cut(s) | 842 |
| BccI | CCATC | 9 cut(s) | 517, 607, 818, 1120, 1352, 1377, 1408, 1430, 1476 |
| BceAI | ACGGC | 1 cut(s) | 195 |
| BciT130I | CCWGG | 2 cut(s) | 1194, 1323 |
| BclI | TGATCA | 1 cut(s) | 709 |
| BcnI | CCSGG | 1 cut(s) | 804 |
| BcoDI | GTCTC | 3 cut(s) | 401, 934, 1471 |
| BfaI | CTAG | 1 cut(s) | 609 |
| BfmI | CTRYAG | 1 cut(s) | 960 |
| Bme1390I | CCNGG | 3 cut(s) | 804, 1194, 1323 |
| Bme18I | GGWCC | 1 cut(s) | 842 |
| BmgT120I | GGNCC | 1 cut(s) | 842 |
| BmiI | GGNNCC | 2 cut(s) | 429, 528 |
| BmrFI | CCNGG | 3 cut(s) | 804, 1194, 1323 |
| BmsI | GCATC | 2 cut(s) | 9, 787 |
| BpmI | CTGGAG | 2 cut(s) | 537, 1191 |
| Bpu14I | TTCGAA | 1 cut(s) | 1185 |
| BpuMI | CCSGG | 1 cut(s) | 804 |
| BsaAI | YACGTR | 1 cut(s) | 1342 |
| BsaBI | GATNNNNATC | 3 cut(s) | 395, 1440, 1462 |
| BsaJI | CCNNGG | 1 cut(s) | 789 |
| BsaWI | WCCGGW | 1 cut(s) | 1252 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 217, 515, 611, 862, 1166 |
| Bse1I | ACTGG | 4 cut(s) | 443, 520, 845, 1208 |
| Bse8I | GATNNNNATC | 3 cut(s) | 395, 1440, 1462 |
| BseBI | CCWGG | 2 cut(s) | 1194, 1323 |
| BseDI | CCNNGG | 1 cut(s) | 789 |
| BseGI | GGATG | 4 cut(s) | 829, 1351, 1388, 1441 |
| BseJI | GATNNNNATC | 3 cut(s) | 395, 1440, 1462 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 217, 515, 611, 862, 1166 |
| BseMII | CTCAG | 4 cut(s) | 437, 621, 675, 935 |
| BseNI | ACTGG | 4 cut(s) | 443, 520, 845, 1208 |
| BsgI | GTGCAG | 2 cut(s) | 1002, 1207 |
| BshFI | GGCC | 1 cut(s) | 807 |
| BsiSI | CCGG | 3 cut(s) | 215, 804, 1253 |
| BslFI | GGGAC | 1 cut(s) | 400 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 217, 515, 611, 862, 1166 |
| BsmAI | GTCTC | 3 cut(s) | 401, 934, 1471 |
| BsmBI | CGTCTC | 1 cut(s) | 1471 |
| BsmFI | GGGAC | 1 cut(s) | 400 |
| BsnI | GGCC | 1 cut(s) | 807 |
| Bsp119I | TTCGAA | 1 cut(s) | 1185 |
| Bsp143I | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| Bsp19I | CCATGG | 1 cut(s) | 789 |
| BspACI | CCGC | 3 cut(s) | 218, 287, 330 |
| BspANI | GGCC | 1 cut(s) | 807 |
| BspCNI | CTCAG | 4 cut(s) | 436, 622, 676, 936 |
| BspLI | GGNNCC | 2 cut(s) | 429, 528 |
| BspPI | GGATC | 4 cut(s) | 193, 835, 1135, 1452 |
| BspQI | GCTCTTC | 1 cut(s) | 1041 |
| BspT104I | TTCGAA | 1 cut(s) | 1185 |
| BsrI | ACTGG | 4 cut(s) | 443, 520, 845, 1208 |
| BssECI | CCNNGG | 1 cut(s) | 789 |
| BssMI | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| BssT1I | CCWWGG | 1 cut(s) | 789 |
| Bst2UI | CCWGG | 2 cut(s) | 1194, 1323 |
| Bst4CI | ACNGT | 3 cut(s) | 412, 915, 1023 |
| Bst6I | CTCTTC | 5 cut(s) | 329, 774, 1041, 1275, 1469 |
| BstBAI | YACGTR | 1 cut(s) | 1342 |
| BstBI | TTCGAA | 1 cut(s) | 1185 |
| BstC8I | GCNNGC | 1 cut(s) | 1106 |
| BstDEI | CTNAG | 6 cut(s) | 423, 582, 630, 684, 738, 944 |
| BstDSI | CCRYGG | 1 cut(s) | 789 |
| BstF5I | GGATG | 4 cut(s) | 829, 1351, 1388, 1441 |
| BstHHI | GCGC | 1 cut(s) | 181 |
| BstKTI | GATC | 7 cut(s) | 188, 399, 648, 712, 830, 1130, 1460 |
| BstMAI | GTCTC | 3 cut(s) | 401, 934, 1471 |
| BstMBI | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| BstNI | CCWGG | 2 cut(s) | 1194, 1323 |
| BstSCI | CCNGG | 3 cut(s) | 802, 1192, 1321 |
| BstSFI | CTRYAG | 1 cut(s) | 960 |
| BsuRI | GGCC | 1 cut(s) | 807 |
| BtgI | CCRYGG | 1 cut(s) | 789 |
| BtsCI | GGATG | 4 cut(s) | 829, 1351, 1388, 1441 |
| BtsIMutI | CAGTG | 1 cut(s) | 920 |
| Cac8I | GCNNGC | 1 cut(s) | 1106 |
| CaiI | CAGNNNCTG | 2 cut(s) | 629, 919 |
| CfoI | GCGC | 1 cut(s) | 181 |
| Cfr13I | GGNCC | 1 cut(s) | 842 |
| CseI | GACGC | 1 cut(s) | 1073 |
| CsiI | ACCWGGT | 1 cut(s) | 1321 |
| Csp6I | GTAC | 1 cut(s) | 1216 |
| CviAII | CATG | 5 cut(s) | 75, 671, 775, 790, 1131 |
| CviQI | GTAC | 1 cut(s) | 1216 |
| DdeI | CTNAG | 6 cut(s) | 423, 582, 630, 684, 738, 944 |
| DpnI | GATC | 7 cut(s) | 187, 398, 647, 711, 829, 1129, 1459 |
| DpnII | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| DraI | TTTAAA | 1 cut(s) | 663 |
| Eam1104I | CTCTTC | 5 cut(s) | 329, 774, 1041, 1275, 1469 |
| EarI | CTCTTC | 5 cut(s) | 329, 774, 1041, 1275, 1469 |
| EciI | GGCGGA | 1 cut(s) | 302 |
| Eco130I | CCWWGG | 1 cut(s) | 789 |
| Eco47I | GGWCC | 1 cut(s) | 842 |
| EcoRI | GAATTC | 2 cut(s) | 965, 1181 |
| EcoRII | CCWGG | 2 cut(s) | 1192, 1321 |
| EcoT14I | CCWWGG | 1 cut(s) | 789 |
| ErhI | CCWWGG | 1 cut(s) | 789 |
| Esp3I | CGTCTC | 1 cut(s) | 1471 |
| FaeI | CATG | 5 cut(s) | 78, 674, 778, 793, 1134 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 40, 72 |
| FaqI | GGGAC | 1 cut(s) | 400 |
| FatI | CATG | 5 cut(s) | 74, 670, 774, 789, 1130 |
| FauI | CCCGC | 2 cut(s) | 211, 323 |
| FbaI | TGATCA | 1 cut(s) | 709 |
| FokI | GGATG | 4 cut(s) | 836, 1358, 1395, 1448 |
| FspBI | CTAG | 1 cut(s) | 609 |
| FspI | TGCGCA | 1 cut(s) | 180 |
| GlaI | GCGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 2 cut(s) | 537, 1191 |
| HaeIII | GGCC | 1 cut(s) | 807 |
| HapII | CCGG | 3 cut(s) | 215, 804, 1253 |
| HgaI | GACGC | 1 cut(s) | 1073 |
| HhaI | GCGC | 1 cut(s) | 181 |
| Hin1II | CATG | 5 cut(s) | 78, 674, 778, 793, 1134 |
| Hin6I | GCGC | 1 cut(s) | 179 |
| HinP1I | GCGC | 1 cut(s) | 179 |
| HincII | GTYRAC | 2 cut(s) | 160, 274 |
| HindII | GTYRAC | 2 cut(s) | 160, 274 |
| HindIII | AAGCTT | 1 cut(s) | 49 |
| HinfI | GANTC | 9 cut(s) | 4, 401, 556, 626, 746, 785, 875, 1401, 1441 |
| HpaII | CCGG | 3 cut(s) | 215, 804, 1253 |
| HphI | GGTGA | 4 cut(s) | 18, 319, 934, 1208 |
| Hpy166II | GTNNAC | 5 cut(s) | 160, 274, 814, 955, 1216 |
| Hpy188I | TCNGA | 9 cut(s) | 12, 243, 406, 631, 685, 714, 1117, 1393, 1468 |
| Hpy188III | TCNNGA | 3 cut(s) | 189, 425, 837 |
| Hpy8I | GTNNAC | 5 cut(s) | 160, 274, 814, 955, 1216 |
| Hpy99I | CGWCG | 3 cut(s) | 150, 203, 1067 |
| HpyAV | CCTTC | 7 cut(s) | 135, 286, 615, 919, 1044, 1236, 1391 |
| HpyCH4III | ACNGT | 3 cut(s) | 412, 915, 1023 |
| HpyCH4IV | ACGT | 1 cut(s) | 1341 |
| HpyCH4V | TGCA | 9 cut(s) | 22, 135, 800, 983, 1154, 1224, 1297, 1337, 1371 |
| HpyF3I | CTNAG | 6 cut(s) | 423, 582, 630, 684, 738, 944 |
| HpySE526I | ACGT | 1 cut(s) | 1341 |
| Hsp92II | CATG | 5 cut(s) | 78, 674, 778, 793, 1134 |
| HspAI | GCGC | 1 cut(s) | 179 |
| Ksp22I | TGATCA | 1 cut(s) | 709 |
| Kzo9I | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| LguI | GCTCTTC | 1 cut(s) | 1041 |
| LmnI | GCTCC | 4 cut(s) | 267, 427, 494, 614 |
| LweI | GCATC | 2 cut(s) | 9, 787 |
| MabI | ACCWGGT | 1 cut(s) | 1321 |
| MaeI | CTAG | 1 cut(s) | 609 |
| MaeII | ACGT | 1 cut(s) | 1341 |
| MaeIII | GTNAC | 6 cut(s) | 77, 248, 594, 655, 847, 1055 |
| MalI | GATC | 7 cut(s) | 187, 398, 647, 711, 829, 1129, 1459 |
| MboI | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| MfeI | CAATTG | 1 cut(s) | 649 |
| MluCI | AATT | 7 cut(s) | 136, 362, 537, 649, 965, 1039, 1181 |
| MlyI | GAGTC | 3 cut(s) | 565, 635, 755 |
| MmeI | TCCRAC | 2 cut(s) | 903, 1360 |
| MseI | TTAA | 4 cut(s) | 662, 753, 1079, 1446 |
| MslI | CAYNNNNRTG | 1 cut(s) | 73 |
| MspI | CCGG | 3 cut(s) | 215, 804, 1253 |
| MspR9I | CCNGG | 3 cut(s) | 804, 1194, 1323 |
| MunI | CAATTG | 1 cut(s) | 649 |
| MvaI | CCWGG | 2 cut(s) | 1194, 1323 |
| NciI | CCSGG | 1 cut(s) | 804 |
| NcoI | CCATGG | 1 cut(s) | 789 |
| NdeII | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| NlaIII | CATG | 5 cut(s) | 78, 674, 778, 793, 1134 |
| NlaIV | GGNNCC | 2 cut(s) | 429, 528 |
| NmuCI | GTSAC | 2 cut(s) | 77, 1055 |
| NsbI | TGCGCA | 1 cut(s) | 180 |
| NspV | TTCGAA | 1 cut(s) | 1185 |
| PciSI | GCTCTTC | 1 cut(s) | 1041 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 816 |
| PfeI | GAWTC | 6 cut(s) | 4, 401, 785, 875, 1401, 1441 |
| PleI | GAGTC | 3 cut(s) | 564, 634, 754 |
| PpsI | GAGTC | 3 cut(s) | 564, 634, 754 |
| Ppu21I | YACGTR | 1 cut(s) | 1342 |
| Psp6I | CCWGG | 2 cut(s) | 1192, 1321 |
| PspGI | CCWGG | 2 cut(s) | 1192, 1321 |
| PspN4I | GGNNCC | 2 cut(s) | 429, 528 |
| PspPI | GGNCC | 1 cut(s) | 842 |
| PstNI | CAGNNNCTG | 2 cut(s) | 629, 919 |
| RsaI | GTAC | 1 cut(s) | 1217 |
| RsaNI | GTAC | 1 cut(s) | 1216 |
| RseI | CAYNNNNRTG | 1 cut(s) | 73 |
| SapI | GCTCTTC | 1 cut(s) | 1041 |
| SaqAI | TTAA | 4 cut(s) | 662, 753, 1079, 1446 |
| Sau3AI | GATC | 7 cut(s) | 185, 396, 645, 709, 827, 1127, 1457 |
| Sau96I | GGNCC | 1 cut(s) | 842 |
| SchI | GAGTC | 3 cut(s) | 565, 635, 755 |
| ScrFI | CCNGG | 3 cut(s) | 804, 1194, 1323 |
| SexAI | ACCWGGT | 1 cut(s) | 1321 |
| SfaNI | GCATC | 2 cut(s) | 9, 787 |
| SfcI | CTRYAG | 1 cut(s) | 960 |
| SfuI | TTCGAA | 1 cut(s) | 1185 |
| SinI | GGWCC | 1 cut(s) | 842 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 73 |
| Sse9I | AATT | 7 cut(s) | 136, 362, 537, 649, 965, 1039, 1181 |
| SsiI | CCGC | 3 cut(s) | 218, 287, 330 |
| SspMI | CTAG | 1 cut(s) | 609 |
| StyD4I | CCNGG | 3 cut(s) | 802, 1192, 1321 |
| StyI | CCWWGG | 1 cut(s) | 789 |
| TaaI | ACNGT | 3 cut(s) | 412, 915, 1023 |
| TaiI | ACGT | 1 cut(s) | 1344 |
| TaqI | TCGA | 4 cut(s) | 399, 819, 1185, 1456 |
| TasI | AATT | 7 cut(s) | 136, 362, 537, 649, 965, 1039, 1181 |
| TfiI | GAWTC | 6 cut(s) | 4, 401, 785, 875, 1401, 1441 |
| Tru1I | TTAA | 4 cut(s) | 662, 753, 1079, 1446 |
| Tru9I | TTAA | 4 cut(s) | 662, 753, 1079, 1446 |
| TscAI | CASTG | 1 cut(s) | 920 |
| TseFI | GTSAC | 2 cut(s) | 77, 1055 |
| Tsp45I | GTSAC | 2 cut(s) | 77, 1055 |
| TspDTI | ATGAA | 7 cut(s) | 26, 63, 95, 1029, 1059, 1410, 1487 |
| TspGWI | ACGGA | 2 cut(s) | 216, 1182 |
| TspRI | CASTG | 1 cut(s) | 920 |
| VpaK11BI | GGWCC | 1 cut(s) | 842 |
| XapI | RAATTY | 3 cut(s) | 362, 965, 1181 |
| XspI | CTAG | 1 cut(s) | 609 |